Rmu_sc0003641.1_g000036

Glucomannan 4-beta-mannosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003641.1
OG0005592
Physical Location & Seq
Reverse (-)
139020 .. 144196
5177 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1218 bp
atggctgagagtaccaaagttctgataccagagacattccagggtgggagtagctttgacattgcaggccaaattgggctgatttgggagctaatcaaagcgccattgatagttcctctgctcagagttggagtctatgtctcactagccatggctctcatgctctttgtggagagggtctacatgggtattgtcattgttttggtcaaaatgttctggaaaaagccagagaagcgctacaactatgagcccattcaggaggatttgggattgggtagttccaatttcccaatggtgcttgttcaaatccccatgttcaatgaaagagaggtctacaagatctccattggagctgcatgtgggctgtcgtggccgtccgatcgtcttgtgatccaagtcctggatgattcaactgaccctacaatcaagaaaatggtggaggcagagtgtcagaggtgggcgagaaaaggcataaacatagtgtaccaaatcagagaaactagaggaggatacaaagcaggtgcattgaaagaaggtttgaaacgaagctacgtgaaacactgtgagtacgtggctataatggacgccgatttccgacccgagccagactatctcaggcgagccatccctttcttggttcagaaccccgaaattgctttggttcaagcacgttggagattcggaactgctggtgtgttgagaattgctactattaatgaggcaggtgggtggaaagatcgttcaacagtggaggatatggatcttgctgtccgagctggtctcagaggctggaaatttttgtaccttggtgaccttcagaaagttacattgtggaagaaattctatgtcatctacagtttcttctttgttaggaagatcattgtccacatggtgactttcttcttttactgtgttgtgcttcccctgaccattttggttcctgaagttcgtgttccaatttggggagcagtttatattccttccatcattgccatccttaactcagttggaactccaaggtcagttcaccttttgttttactggatccttttcgagaatgtgatgtccttgcaccggaccaaggcaactttaatcggcctattcggagccgggagagccaatgaatgggttgtcaccgagaaactgggagatgctgccaagaacaaaccagcccccaaattcttcaggaaaccaaagttcaagtttggcaacaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_tranf_2_3 Glyco_trans_2_3 Glycos_transf_2

Protein Analysis

405

Amino Acids

46.25

Weight (kDa)

9.65

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 102 - 239 5.1e-11 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 509, 713
Acc36I ACCTGC 2 cut(s) 509, 713
AccB7I CCANNNNNTGG 2 cut(s) 400, 1125
AccI GTMKAC 2 cut(s) 180, 333
AclWI GGATC 4 cut(s) 385, 768, 1039, 1052
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 3 cut(s) 794, 839, 1178
AcuI CTGAAG 3 cut(s) 800, 963, 1168
AcyI GRCGYC 1 cut(s) 585
AdeI CACNNNGTG 1 cut(s) 892
AfaI GTAC 4 cut(s) 13, 485, 569, 803
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 6 cut(s) 400, 634, 962, 1074, 1081, 1125
AgsI TTSAA 8 cut(s) 305, 319, 411, 529, 541, 665, 744, 1201
AjnI CCWGG 2 cut(s) 39, 399
AloI GAACNNNNNNTCC 2 cut(s) 724, 756
AluBI AGCT 5 cut(s) 54, 91, 353, 549, 776
AluI AGCT 5 cut(s) 54, 91, 353, 549, 776
Alw26I GTCTC 3 cut(s) 26, 145, 785
AlwI GGATC 4 cut(s) 385, 768, 1039, 1052
AlwNI CAGNNNCTG 1 cut(s) 789
Ama87I CYCGRG 1 cut(s) 599
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 3 cut(s) 67, 371, 1096
ApeKI GCWGC 2 cut(s) 353, 1154
ApoI RAATTY 3 cut(s) 794, 839, 1178
AseI ATTAAT 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 839
AspLEI GCGC 2 cut(s) 103, 237
AspS9I GGNCC 1 cut(s) 1077
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 4 cut(s) 821, 904, 1019, 1126
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 1 cut(s) 1077
BamHI GGATCC 1 cut(s) 1044
BanII GRGCYC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 340, 1141
BccI CCATC 3 cut(s) 632, 992, 1001
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 2 cut(s) 41, 401
BciVI GTATCC 1 cut(s) 503
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 3 cut(s) 26, 145, 785
BfaI CTAG 2 cut(s) 146, 501
BfmI CTRYAG 1 cut(s) 853
BfoI RGCGCY 2 cut(s) 104, 238
BfuAI ACCTGC 2 cut(s) 509, 713
BfuI GTATCC 1 cut(s) 503
BglII AGATCT 1 cut(s) 339
BisI GCNGC 2 cut(s) 354, 1155
BlsI GCNGC 2 cut(s) 355, 1156
Bme1390I CCNGG 3 cut(s) 41, 401, 1111
Bme18I GGWCC 1 cut(s) 1077
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 1077
BmiI GGNNCC 3 cut(s) 939, 1046, 1108
BmrFI CCNGG 3 cut(s) 41, 401, 1111
BmrI ACTGGG 1 cut(s) 1154
BmsI GCATC 1 cut(s) 1141
BmuI ACTGGG 1 cut(s) 1154
BplI GAGNNNNNCTC 2 cut(s) 765, 797
BpuMI CCSGG 1 cut(s) 1111
BsaAI YACGTR 2 cut(s) 553, 571
BsaBI GATNNNNATC 1 cut(s) 759
BsaHI GRCGYC 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 5 cut(s) 40, 150, 805, 1016, 1080
BsaWI WCCGGW 1 cut(s) 1074
BsaXI ACNNNNNCTCC 6 cut(s) 123, 153, 326, 356, 431, 461
Bsc4I CCNNNNNNNGG 6 cut(s) 400, 634, 962, 1074, 1081, 1125
Bse1I ACTGG 2 cut(s) 1046, 1149
Bse3DI GCAATG 2 cut(s) 60, 987
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 2 cut(s) 41, 401
BseDI CCNNGG 5 cut(s) 40, 150, 805, 1016, 1080
BseGI GGATG 3 cut(s) 409, 624, 993
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 6 cut(s) 400, 634, 962, 1074, 1081, 1125
BseMI GCAATG 2 cut(s) 60, 987
BseMII CTCAG 4 cut(s) 136, 628, 796, 1017
BseNI ACTGG 2 cut(s) 1046, 1149
BseRI GAGGAG 1 cut(s) 519
BseXI GCAGC 2 cut(s) 340, 1141
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 3 cut(s) 69, 373, 1098
BsiEI CGRYCG 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 2 cut(s) 1075, 1110
BslI CCNNNNNNNGG 6 cut(s) 400, 634, 962, 1074, 1081, 1125
BsmAI GTCTC 3 cut(s) 26, 145, 785
BsnI GGCC 3 cut(s) 69, 373, 1098
Bso31I GGTCTC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
Bsp19I CCATGG 1 cut(s) 150
BspANI GGCC 3 cut(s) 69, 373, 1098
BspCNI CTCAG 4 cut(s) 135, 627, 795, 1016
BspLI GGNNCC 3 cut(s) 939, 1046, 1108
BspMI ACCTGC 2 cut(s) 509, 713
BspPI GGATC 4 cut(s) 385, 768, 1039, 1052
BspTNI GGTCTC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 60, 987
BsrI ACTGG 2 cut(s) 1046, 1149
BssECI CCNNGG 5 cut(s) 40, 150, 805, 1016, 1080
BssMI GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
BssNI GRCGYC 1 cut(s) 585
BssT1I CCWWGG 4 cut(s) 150, 805, 1016, 1080
Bst2UI CCWGG 2 cut(s) 41, 401
Bst4CI ACNGT 4 cut(s) 563, 748, 857, 911
BstACI GRCGYC 1 cut(s) 585
BstBAI YACGTR 2 cut(s) 553, 571
BstC8I GCNNGC 2 cut(s) 67, 621
BstDEI CTNAG 5 cut(s) 6, 122, 614, 782, 1003
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 809
BstF5I GGATG 3 cut(s) 409, 624, 993
BstH2I RGCGCY 2 cut(s) 104, 238
BstHHI GCGC 2 cut(s) 103, 237
BstKTI GATC 7 cut(s) 342, 382, 393, 739, 763, 879, 1047
BstMAI GTCTC 3 cut(s) 26, 145, 785
BstMBI GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 4 cut(s) 232, 370, 773, 1115
BstNI CCWGG 2 cut(s) 41, 401
BstNSI RCATGY 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 809
BstSCI CCNGG 3 cut(s) 39, 399, 1109
BstSFI CTRYAG 1 cut(s) 853
BstV1I GCAGC 2 cut(s) 340, 1141
BstX2I RGATCY 3 cut(s) 339, 760, 1044
BstYI RGATCY 3 cut(s) 339, 760, 1044
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 3 cut(s) 69, 373, 1098
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 3 cut(s) 409, 624, 993
BtsIMutI CAGTG 2 cut(s) 559, 753
BveI ACCTGC 2 cut(s) 509, 713
Cac8I GCNNGC 2 cut(s) 67, 621
CaiI CAGNNNCTG 1 cut(s) 789
CfoI GCGC 2 cut(s) 103, 237
Cfr13I GGNCC 1 cut(s) 1077
CseI GACGC 1 cut(s) 593
Csp6I GTAC 4 cut(s) 12, 484, 568, 802
CviAII CATG 6 cut(s) 151, 160, 184, 313, 357, 889
CviQI GTAC 4 cut(s) 12, 484, 568, 802
DdeI CTNAG 5 cut(s) 6, 122, 614, 782, 1003
DpnI GATC 7 cut(s) 341, 381, 392, 738, 762, 878, 1046
DpnII GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
DraIII CACNNNGTG 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 371
Eco130I CCWWGG 4 cut(s) 150, 805, 1016, 1080
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 1077
Eco47III AGCGCT 1 cut(s) 236
Eco57I CTGAAG 3 cut(s) 800, 963, 1168
Eco88I CYCGRG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 809
EcoO65I GGTNACC 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 39, 399
EcoT14I CCWWGG 4 cut(s) 150, 805, 1016, 1080
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 4 cut(s) 150, 805, 1016, 1080
FaeI CATG 6 cut(s) 154, 163, 187, 316, 360, 892
FatI CATG 6 cut(s) 150, 159, 183, 312, 356, 888
FblI GTMKAC 2 cut(s) 180, 333
Fnu4HI GCNGC 2 cut(s) 354, 1155
FokI GGATG 3 cut(s) 416, 611, 980
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 354, 1155
FspBI CTAG 2 cut(s) 146, 501
GlaI GCGC 2 cut(s) 102, 236
GluI GCNGC 2 cut(s) 354, 1155
HaeII RGCGCY 2 cut(s) 104, 238
HaeIII GGCC 3 cut(s) 69, 373, 1098
HapII CCGG 2 cut(s) 1075, 1110
HgaI GACGC 1 cut(s) 593
HhaI GCGC 2 cut(s) 103, 237
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 6 cut(s) 154, 163, 187, 316, 360, 892
Hin6I GCGC 2 cut(s) 101, 235
HinP1I GCGC 2 cut(s) 101, 235
HinfI GANTC 3 cut(s) 132, 407, 678
HpaII CCGG 2 cut(s) 1075, 1110
HphI GGTGA 4 cut(s) 821, 904, 1019, 1126
Hpy166II GTNNAC 5 cut(s) 181, 334, 484, 886, 1027
Hpy188III TCNNGA 6 cut(s) 217, 257, 427, 941, 1054, 1186
Hpy8I GTNNAC 5 cut(s) 181, 334, 484, 886, 1027
HpyAV CCTTC 3 cut(s) 527, 824, 990
HpyCH4III ACNGT 4 cut(s) 563, 748, 857, 911
HpyCH4IV ACGT 3 cut(s) 552, 570, 670
HpyCH4V TGCA 4 cut(s) 65, 356, 524, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 370, 773, 1115
HpyF3I CTNAG 5 cut(s) 6, 122, 614, 782, 1003
HpySE526I ACGT 3 cut(s) 552, 570, 670
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 6 cut(s) 154, 163, 187, 316, 360, 892
HspAI GCGC 2 cut(s) 101, 235
Kzo9I GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
LmnI GCTCC 4 cut(s) 88, 350, 965, 1106
Lsp1109I GCAGC 2 cut(s) 340, 1141
LweI GCATC 1 cut(s) 1141
MaeI CTAG 2 cut(s) 146, 501
MaeII ACGT 3 cut(s) 552, 570, 670
MaeIII GTNAC 4 cut(s) 809, 823, 892, 1132
MalI GATC 7 cut(s) 341, 381, 392, 738, 762, 878, 1046
MboI GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
MboII GAAGA 5 cut(s) 847, 853, 886, 892, 1174
MflI RGATCY 3 cut(s) 339, 760, 1044
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 8 cut(s) 72, 283, 651, 702, 794, 839, 957, 1178
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 4 cut(s) 109, 619, 653, 988
MroXI GAANNNNTTC 1 cut(s) 839
MseI TTAA 3 cut(s) 714, 999, 1091
MspI CCGG 2 cut(s) 1075, 1110
MspR9I CCNGG 3 cut(s) 41, 401, 1111
MvaI CCWGG 2 cut(s) 41, 401
MwoI GCNNNNNNNGC 4 cut(s) 232, 370, 773, 1115
NciI CCSGG 1 cut(s) 1111
NcoI CCATGG 1 cut(s) 150
NdeII GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
NlaIII CATG 6 cut(s) 154, 163, 187, 316, 360, 892
NlaIV GGNNCC 3 cut(s) 939, 1046, 1108
NmuCI GTSAC 3 cut(s) 809, 892, 1132
NspI RCATGY 1 cut(s) 360
PaqCI CACCTGC 2 cut(s) 509, 713
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 2 cut(s) 407, 678
PflMI CCANNNNNTGG 2 cut(s) 400, 1125
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 2 cut(s) 355, 1156
Ple19I CGATCG 1 cut(s) 382
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Ppu21I YACGTR 2 cut(s) 553, 571
PshBI ATTAAT 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 39, 399
PspEI GGTNACC 1 cut(s) 809
PspGI CCWGG 2 cut(s) 39, 399
PspN4I GGNNCC 3 cut(s) 939, 1046, 1108
PspPI GGNCC 1 cut(s) 1077
PstNI CAGNNNCTG 1 cut(s) 789
PsuI RGATCY 3 cut(s) 339, 760, 1044
PvuI CGATCG 1 cut(s) 382
RsaI GTAC 4 cut(s) 13, 485, 569, 803
RsaNI GTAC 4 cut(s) 12, 484, 568, 802
SaqAI TTAA 3 cut(s) 714, 999, 1091
SatI GCNGC 2 cut(s) 354, 1155
Sau3AI GATC 7 cut(s) 339, 379, 390, 736, 760, 876, 1044
Sau96I GGNCC 1 cut(s) 1077
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 3 cut(s) 41, 401, 1111
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 1 cut(s) 1141
SfcI CTRYAG 1 cut(s) 853
SinI GGWCC 1 cut(s) 1077
Sse9I AATT 8 cut(s) 72, 283, 651, 702, 794, 839, 957, 1178
SspMI CTAG 2 cut(s) 146, 501
StyD4I CCNGG 3 cut(s) 39, 399, 1109
StyI CCWWGG 4 cut(s) 150, 805, 1016, 1080
TaaI ACNGT 4 cut(s) 563, 748, 857, 911
TaiI ACGT 3 cut(s) 555, 573, 673
TaqI TCGA 1 cut(s) 1053
TasI AATT 8 cut(s) 72, 283, 651, 702, 794, 839, 957, 1178
TfiI GAWTC 2 cut(s) 407, 678
Tru1I TTAA 3 cut(s) 714, 999, 1091
Tru9I TTAA 3 cut(s) 714, 999, 1091
TscAI CASTG 2 cut(s) 566, 753
TseFI GTSAC 3 cut(s) 809, 892, 1132
TseI GCWGC 2 cut(s) 353, 1154
Tsp45I GTSAC 3 cut(s) 809, 892, 1132
TspDTI ATGAA 2 cut(s) 336, 1137
TspRI CASTG 2 cut(s) 566, 753
Van91I CCANNNNNTGG 2 cut(s) 400, 1125
VpaK11BI GGWCC 1 cut(s) 1077
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 3 cut(s) 794, 839, 1178
XceI RCATGY 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 2 cut(s) 289, 631
XmiI GTMKAC 2 cut(s) 180, 333
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 2 cut(s) 146, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.