Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003742.1

Orthogroup ID

OG0011643

Physical Location & Seq

Genomic Coordinates Forward (+)

42506 .. 49085

Gene Structure 6580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003742.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2808 bp

atgttgatgcactattggaacggctgcccgctagagcggtggtcgacaggcttgccgcaggaggatatgacggcagctgaggcaaaggagcaacatgagactcctcttctgttggcttgggtttgggcctgggtctctgagcatgggctcaatcttgggctgatggggcagaggagtcttcctgctatgcaagacttgatttggacttggacttacaggtttaggctcgggtacaagagctgctgcagcagcgaaagatactttaagcatcaatacttgaagcatcagtactctcattattttcacgctggaacttcccatcgttcgaaagtttttggtgcaattcccactaggcaggctcaagaggttacagaagacctgaaatcttccagaagagaagcatccacacttgcagcaatgaaatcacaagctggccctaatccccaggaggactacaaactaaaggacacgaaaccccagcttggggaacgatggccacatggaggagttcgcggtggaggagggtggataagcagcgaaagagctacaagcacttacgaccttgttgagcagatgttctatctctatgttagagttgttaaagccaaaaatcttccaacaaatcctttaacaggaagctgtgatccttatgtagaagtgaagctcggaaattacaagggaaaaacacaccactttgagaagagaacaaaccctgaatggaagcaggtgtttgcattctcaaaagagaagattcagtcttccatacttgaagtatatgtcagagaaaaagacatggtagcaagagatgactatatagggaaagtggtgtttgacatgcatgaagtgccaactagagttccaccggatagccctttggctcctcagtggtatagattagaacaccggacaagcgatagtaaggttagaggagaggtgatgcttgcagtttggatgggaacacaggctgatgaagctttcccagaagcttggcactcggatgctgcttcagttcatggagaaggagttttcagcattcggtccaaagtttacgtttcaccaaaactttggtatctcagagtcaatgtaattgaagctcaagatgtggagccgcatgacaaaagccaaacaccacaagcttttgtgaaggttcatgttggaaatcagacactcaagacaaagttatgtccaactaaaacccccaatccaatgtggaatgaagacttgatcttcgtagcagcagagcctttcgaagaactgcttgtacttacggttgaaaacaaagtaagctctgcaaaagatgaacaagtggggaaaataagccttccactgaccatgttcgaaaggcgcttggatcacaggccagtccattctcgctggttcacccttgaaagatttggttttggtgcattggagggagacaagaggcatgagcacaagttctcaaccagagtccatctaagagtatgccttgagggtgcttaccatgttctagatgaatcaaccttgtacataagtgatgtgaggcctactgctaggcagctatggaagcagccaattgggattcttgaagtggggatcttaagtgctcaagggcttcttccaatgaagaccaaggatggtaaatcaacaactgatgcttactgtgtagccaagtatgggcagaaatgggtgaggaccagaacaatcatcgaaagcttcagtccgaaatggaatgagcaatacacatgggaggtctatgacccttgcaccgtgatcacactaggagttttcgacaactgccacctgggtggaaatgagaaaccaacttctggcagtggagctaaaaatgactcaagaattggcaaggtaagaatccggttatcaactcttgaaatggataggatttacaccaactcctatccacttcttgttcttcacccatctggattgaaaaagatgggggaactacaactagcagtaaggtttacctgtctctcattagcaaatataatctacctctacggccatcccttgcttcccaaaatgcattacctgcatccattcactgtaaaccagttagatagtctgagatatcaggcaatgaacattgtaggtgccagacttggcagagctgagccaccactaagaaaagaggtggtggagtacatgcttgatgtagattcccacatgtggagcatgagaagaagcaaagccaactttttcagaattgtttcgctcttctctggcctaatctccatgagcaggtggcttggcgaagttcgtcactggaaaaacccaatcactacagttctagttcatgttctgtttgtcctcctgatctgctacccagaattgatcctccctacgatcttcctttacatgtttctcatcggaatatggaatttccgtttccgcccgagagttccacctagtatggatactaaactttcatgggcagaagctgttcacccagatgaaatggatgaagagtttgacaccttccctacatcgaaggcccaagacgtggtgcgaatgaggtatgatagactacgaagtgttgcaggaagaattcaaacggtggttggagacattgcaactcagggggagagattccaggcagtgctcggttggagagacccaagagcaagcagcttgttcgtatttttgtgccttattatcgctgtagtgctctatgtgacacccttcaagatgattgctctgatttccggcatagtttggctacgccaccctagattccgaagcaagctaccttcagtgcccagcaatttcttcagaagactgccatctcgtgctgatagcatgctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009314 GO:0009416 GO:0009506 GO:0009510 GO:0009511 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0022414 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0035556 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045184 GO:0046872 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055044 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

935

Amino Acids

107.65

Weight (kDa)

9.21

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06850
fragaria_vesca	FvH4_6g22780 FvH4_6g22780
malus_domestica	MD12G1062100.v1.1 MD14G1056400.v1.1
prunus_persica	Prupe.7G072800_v2.0.a1
pyrus_communis	pycom12g05490 pycom14g04620
rosa_chinensis	RchiOBHm_Chr3g0480381
rosa_laevigata	RLG00000023487
rosa_multiflora	Rmu_sc0002205.1_g000002 Rmu_sc0003742.1_g000015
rosa_roxburghii	Rroxscaffold_6G00401430
rosa_rugosa	Rorug03G0183500
rosa_samantha	Rh3AG235000 Rh3BG267500 Rh3CG264800 Rh3DG260700
rosa_wichuraiana	Rw3G021090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	715, 2232
Acc36I	ACCTGC	3 cut(s)	715, 2040, 2232
AccB1I	GGYRCC	1 cut(s)	2093
AccB7I	CCANNNNNTGG	2 cut(s)	1808, 2503
AccBSI	CCGCTC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	513
AciI	CCGC	6 cut(s)	29, 37, 56, 513, 1109, 2392
AclWI	GGATC	4 cut(s)	638, 1359, 1583, 2329
AcoI	YGGCCR	2 cut(s)	494, 2002
AcsI	RAATTY	2 cut(s)	2380, 2547
AcuI	CTGAAG	4 cut(s)	990, 1681, 2736, 2755
AfaI	GTAC	5 cut(s)	233, 290, 1263, 1508, 2144
AflII	CTTAAG	1 cut(s)	1579
AflIII	ACRYGT	2 cut(s)	2166, 2358
AjiI	CACGTC	1 cut(s)	2503
AjnI	CCWGG	4 cut(s)	128, 444, 1782, 2592
AleI	CACNNNNGTG	1 cut(s)	1785
Alw21I	GWGCWC	4 cut(s)	1434, 1588, 2604, 2670
Alw26I	GTCTC	6 cut(s)	92, 139, 1410, 1976, 2559, 2607
AlwI	GGATC	4 cut(s)	638, 1359, 1583, 2329
AlwNI	CAGNNNCTG	1 cut(s)	2441
Ama87I	CYCGRG	2 cut(s)	227, 2395
AoxI	GGCC	8 cut(s)	126, 433, 494, 1358, 1523, 2002, 2224, 2493
ApoI	RAATTY	2 cut(s)	2380, 2547
ArsI	GACNNNNNNTTYG	2 cut(s)	1211, 1243
Asp700I	GAANNNNTTC	2 cut(s)	2209, 2442
AspLEI	GCGC	1 cut(s)	1347
AspS9I	GGNCC	5 cut(s)	126, 434, 1038, 1674, 2494
AsuHPI	GGTGA	6 cut(s)	946, 1047, 1372, 1681, 1907, 2438
AsuII	TTCGAA	3 cut(s)	326, 1248, 1338
AvaI	CYCGRG	2 cut(s)	227, 2395
AvaII	GGWCC	2 cut(s)	1038, 1674
BaeGI	GKGCMC	1 cut(s)	2760
BaeI	ACNNNNGTAYC	2 cut(s)	1052, 1085
BalI	TGGCCA	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	2093
BanII	GRGCYC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BauI	CACGAG	1 cut(s)	2787
BbsI	GAAGAC	6 cut(s)	170, 381, 750, 1224, 1613, 2782
Bbv12I	GWGCWC	4 cut(s)	1434, 1588, 2604, 2670
BbvCI	CCTCAGC	1 cut(s)	78
BceAI	ACGGC	3 cut(s)	37, 87, 2017
BcgI	CGANNNNNNTGC	4 cut(s)	34, 68, 2617, 2651
BciT130I	CCWGG	4 cut(s)	130, 446, 1784, 2594
BciVI	GTATCC	1 cut(s)	2410
BclI	TGATCA	1 cut(s)	1752
BcoDI	GTCTC	6 cut(s)	92, 139, 1410, 1976, 2559, 2607
BfmI	CTRYAG	3 cut(s)	244, 2283, 2661
BfoI	RGCGCY	1 cut(s)	1348
BfrI	CTTAAG	1 cut(s)	1579
BfuAI	ACCTGC	3 cut(s)	715, 2040, 2232
BfuI	GTATCC	1 cut(s)	2410
BlpI	GCTNAGC	1 cut(s)	2112
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	4 cut(s)	130, 446, 1784, 2594
Bme18I	GGWCC	2 cut(s)	1038, 1674
BmeT110I	CYCGRG	2 cut(s)	227, 2395
BmgBI	CACGTC	1 cut(s)	2503
BmgT120I	GGNCC	5 cut(s)	126, 434, 1038, 1674, 2494
BmiI	GGNNCC	3 cut(s)	879, 1107, 2095
BmrFI	CCNGG	4 cut(s)	130, 446, 1784, 2594
BmsI	GCATC	7 cut(s)	277, 292, 410, 927, 988, 1624, 2044
BpiI	GAAGAC	6 cut(s)	170, 381, 750, 1224, 1613, 2782
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	2112
Bpu14I	TTCGAA	3 cut(s)	326, 1248, 1338
BpuEI	CTTGAG	6 cut(s)	345, 1080, 1154, 1490, 1572, 1816
BsaI	GGTCTC	2 cut(s)	139, 2607
BsaJI	CCNNGG	4 cut(s)	129, 444, 1611, 1783
BsaWI	WCCGGW	3 cut(s)	862, 903, 1854
BsaXI	ACNNNNNCTCC	4 cut(s)	1008, 1038, 1877, 1907
Bse1I	ACTGG	3 cut(s)	1361, 2053, 2270
Bse3DI	GCAATG	3 cut(s)	423, 2085, 2568
BseBI	CCWGG	4 cut(s)	130, 446, 1784, 2594
BseDI	CCNNGG	4 cut(s)	129, 444, 1611, 1783
BseGI	GGATG	7 cut(s)	401, 957, 1003, 1621, 2005, 2035, 2467
BseMI	GCAATG	3 cut(s)	423, 2085, 2568
BseMII	CTCAG	7 cut(s)	69, 129, 896, 1087, 2057, 2103, 2591
BseNI	ACTGG	3 cut(s)	1361, 2053, 2270
BseRI	GAGGAG	6 cut(s)	93, 187, 519, 534, 870, 942
BseSI	GKGCMC	1 cut(s)	2760
BseYI	CCCAGC	2 cut(s)	477, 2759
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	8 cut(s)	128, 435, 496, 1360, 1525, 2004, 2226, 2495
BshNI	GGYRCC	1 cut(s)	2093
BsiHKAI	GWGCWC	4 cut(s)	1434, 1588, 2604, 2670
BsiHKCI	CYCGRG	2 cut(s)	227, 2395
BsiSI	CCGG	4 cut(s)	863, 904, 1855, 2706
BsmAI	GTCTC	6 cut(s)	92, 139, 1410, 1976, 2559, 2607
BsmI	GAATGC	2 cut(s)	734, 1032
BsnI	GGCC	8 cut(s)	128, 435, 496, 1360, 1525, 2004, 2226, 2495
Bso31I	GGTCTC	2 cut(s)	139, 2607
BsoBI	CYCGRG	2 cut(s)	227, 2395
Bsp119I	TTCGAA	3 cut(s)	326, 1248, 1338
Bsp1286I	GDGCHC	6 cut(s)	150, 1434, 1588, 2604, 2670, 2760
Bsp1407I	TGTACA	1 cut(s)	1506
Bsp143I	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
Bsp1720I	GCTNAGC	1 cut(s)	2112
BspACI	CCGC	6 cut(s)	29, 37, 56, 513, 1109, 2392
BspANI	GGCC	8 cut(s)	128, 435, 496, 1360, 1525, 2004, 2226, 2495
BspCNI	CTCAG	7 cut(s)	70, 130, 895, 1086, 2058, 2104, 2590
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	879, 1107, 2095
BspMAI	CTGCAG	1 cut(s)	248
BspMI	ACCTGC	3 cut(s)	715, 2040, 2232
BspPI	GGATC	4 cut(s)	638, 1359, 1583, 2329
BspQI	GCTCTTC	1 cut(s)	2222
BspT104I	TTCGAA	3 cut(s)	326, 1248, 1338
BspT107I	GGYRCC	1 cut(s)	2093
BspTI	CTTAAG	1 cut(s)	1579
BspTNI	GGTCTC	2 cut(s)	139, 2607
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	3 cut(s)	423, 2085, 2568
BsrGI	TGTACA	1 cut(s)	1506
BsrI	ACTGG	3 cut(s)	1361, 2053, 2270
BssECI	CCNNGG	4 cut(s)	129, 444, 1611, 1783
BssMI	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
BssSI	CACGAG	1 cut(s)	2787
BssT1I	CCWWGG	1 cut(s)	1611
Bst2BI	CACGAG	1 cut(s)	2787
Bst2UI	CCWGG	4 cut(s)	130, 446, 1784, 2594
Bst4CI	ACNGT	6 cut(s)	1270, 1643, 1750, 2047, 2287, 2557
Bst6I	CTCTTC	5 cut(s)	111, 388, 695, 2222, 2460
BstAFI	CTTAAG	1 cut(s)	1579
BstAPI	GCANNNNNTGC	2 cut(s)	844, 2032
BstAUI	TGTACA	1 cut(s)	1506
BstBI	TTCGAA	3 cut(s)	326, 1248, 1338
BstC8I	GCNNGC	8 cut(s)	29, 53, 357, 433, 942, 2626, 2744, 2801
BstDEI	CTNAG	9 cut(s)	78, 138, 882, 1073, 1457, 2066, 2112, 2123, 2577
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	7 cut(s)	401, 957, 1003, 1621, 2005, 2035, 2467
BstFNI	CGCG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	1348
BstHHI	GCGC	1 cut(s)	1347
BstKTI	GATC	8 cut(s)	646, 1227, 1354, 1578, 1755, 2319, 2337, 2349
BstMAI	GTCTC	6 cut(s)	92, 139, 1410, 1976, 2559, 2607
BstMBI	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 166, 246, 249, 844, 971, 1546, 2032
BstNI	CCWGG	4 cut(s)	130, 446, 1784, 2594
BstNSI	RCATGY	5 cut(s)	838, 2149, 2170, 2362, 2803
BstSCI	CCNGG	4 cut(s)	128, 444, 1782, 2592
BstSFI	CTRYAG	3 cut(s)	244, 2283, 2661
BstSLI	GKGCMC	1 cut(s)	2760
BstUI	CGCG	1 cut(s)	513
BstV2I	GAAGAC	6 cut(s)	170, 381, 750, 1224, 1613, 2782
BstX2I	RGATCY	1 cut(s)	1575
BstXI	CCANNNNNNTGG	3 cut(s)	987, 1065, 1787
BstYI	RGATCY	1 cut(s)	1575
BsuI	GTATCC	1 cut(s)	2410
BsuRI	GGCC	8 cut(s)	128, 435, 496, 1360, 1525, 2004, 2226, 2495
BtrI	CACGTC	1 cut(s)	2503
BtsCI	GGATG	7 cut(s)	401, 957, 1003, 1621, 2005, 2035, 2467
BtsI	GCAGTG	2 cut(s)	1819, 2604
BtsIMutI	CAGTG	7 cut(s)	890, 1325, 1819, 2043, 2263, 2604, 2760
BveI	ACCTGC	3 cut(s)	715, 2040, 2232
Cac8I	GCNNGC	8 cut(s)	29, 53, 357, 433, 942, 2626, 2744, 2801
CaiI	CAGNNNCTG	1 cut(s)	2441
CfoI	GCGC	1 cut(s)	1347
Cfr13I	GGNCC	5 cut(s)	126, 434, 1038, 1674, 2494
Csp6I	GTAC	5 cut(s)	232, 289, 1262, 1507, 2143
CviQI	GTAC	5 cut(s)	232, 289, 1262, 1507, 2143
DdeI	CTNAG	9 cut(s)	78, 138, 882, 1073, 1457, 2066, 2112, 2123, 2577
DpnI	GATC	8 cut(s)	645, 1226, 1353, 1577, 1754, 2318, 2336, 2348
DpnII	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
EaeI	YGGCCR	2 cut(s)	494, 2002
Eam1104I	CTCTTC	5 cut(s)	111, 388, 695, 2222, 2460
EarI	CTCTTC	5 cut(s)	111, 388, 695, 2222, 2460
EciI	GGCGGA	1 cut(s)	2381
Eco130I	CCWWGG	1 cut(s)	1611
Eco147I	AGGCCT	1 cut(s)	1525
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	2 cut(s)	139, 2607
Eco32I	GATATC	1 cut(s)	2072
Eco47I	GGWCC	2 cut(s)	1038, 1674
Eco57I	CTGAAG	4 cut(s)	990, 1681, 2736, 2755
Eco88I	CYCGRG	2 cut(s)	227, 2395
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	2547
EcoRII	CCWGG	4 cut(s)	128, 444, 1782, 2592
EcoRV	GATATC	1 cut(s)	2072
EcoT14I	CCWWGG	1 cut(s)	1611
EcoT22I	ATGCAT	2 cut(s)	840, 2028
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	1611
FalI	AAGNNNNNCTT	4 cut(s)	1242, 1274, 1581, 1613
FauI	CCCGC	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	1752
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	7 cut(s)	388, 964, 1010, 1628, 1992, 2022, 2474
FriOI	GRGCYC	1 cut(s)	150
GlaI	GCGC	1 cut(s)	1346
GsaI	CCCAGC	2 cut(s)	481, 2763
HaeII	RGCGCY	1 cut(s)	1348
HaeIII	GGCC	8 cut(s)	128, 435, 496, 1360, 1525, 2004, 2226, 2495
HapII	CCGG	4 cut(s)	863, 904, 1855, 2706
HhaI	GCGC	1 cut(s)	1347
Hin6I	GCGC	1 cut(s)	1345
HinP1I	GCGC	1 cut(s)	1345
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	4 cut(s)	972, 984, 1134, 1693
HpaII	CCGG	4 cut(s)	863, 904, 1855, 2706
HphI	GGTGA	6 cut(s)	946, 1047, 1372, 1681, 1907, 2438
Hpy166II	GTNNAC	6 cut(s)	45, 1048, 1380, 1965, 2050, 2446
Hpy8I	GTNNAC	6 cut(s)	45, 1048, 1380, 1965, 2050, 2446
HpyAV	CCTTC	7 cut(s)	1013, 1138, 1331, 2485, 2488, 2692, 2760
HpyCH4III	ACNGT	6 cut(s)	1270, 1643, 1750, 2047, 2287, 2557
HpyCH4IV	ACGT	2 cut(s)	1050, 2502
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 166, 246, 249, 844, 971, 1546, 2032
HpyF3I	CTNAG	9 cut(s)	78, 138, 882, 1073, 1457, 2066, 2112, 2123, 2577
HpySE526I	ACGT	2 cut(s)	1050, 2502
HspAI	GCGC	1 cut(s)	1345
Ksp22I	TGATCA	1 cut(s)	1752
Kzo9I	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
LguI	GCTCTTC	1 cut(s)	2222
LmnI	GCTCC	5 cut(s)	88, 883, 1105, 1817, 2172
LweI	GCATC	7 cut(s)	277, 292, 410, 927, 988, 1624, 2044
MaeII	ACGT	2 cut(s)	1050, 2502
MaeIII	GTNAC	3 cut(s)	367, 2261, 2674
MalI	GATC	8 cut(s)	645, 1226, 1353, 1577, 1754, 2318, 2336, 2348
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
MfeI	CAATTG	1 cut(s)	1554
MflI	RGATCY	1 cut(s)	1575
MhlI	GDGCHC	6 cut(s)	150, 1434, 1588, 2604, 2670, 2760
MlsI	TGGCCA	1 cut(s)	496
MluNI	TGGCCA	1 cut(s)	496
MlyI	GAGTC	5 cut(s)	94, 184, 1086, 1458, 1823
MmeI	TCCRAC	5 cut(s)	641, 1135, 1211, 2542, 2588
Mox20I	TGGCCA	1 cut(s)	496
Mph1103I	ATGCAT	2 cut(s)	840, 2028
MroXI	GAANNNNTTC	2 cut(s)	2209, 2442
MscI	TGGCCA	1 cut(s)	496
MseI	TTAA	4 cut(s)	264, 600, 629, 1580
MslI	CAYNNNNRTG	3 cut(s)	996, 1785, 2451
Msp20I	TGGCCA	1 cut(s)	496
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	1579
MspI	CCGG	4 cut(s)	863, 904, 1855, 2706
MspR9I	CCNGG	4 cut(s)	130, 446, 1784, 2594
MunI	CAATTG	1 cut(s)	1554
Mva1269I	GAATGC	2 cut(s)	734, 1032
MvaI	CCWGG	4 cut(s)	130, 446, 1784, 2594
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	8 cut(s)	80, 166, 246, 249, 844, 971, 1546, 2032
NdeII	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
NlaIV	GGNNCC	3 cut(s)	879, 1107, 2095
NmuCI	GTSAC	2 cut(s)	2261, 2674
NsiI	ATGCAT	2 cut(s)	840, 2028
NspI	RCATGY	5 cut(s)	838, 2149, 2170, 2362, 2803
NspV	TTCGAA	3 cut(s)	326, 1248, 1338
OliI	CACNNNNGTG	1 cut(s)	1785
PaeI	GCATGC	1 cut(s)	2803
PaqCI	CACCTGC	2 cut(s)	715, 2232
PceI	AGGCCT	1 cut(s)	1525
PciI	ACATGT	2 cut(s)	2166, 2358
PciSI	GCTCTTC	1 cut(s)	2222
PctI	GAATGC	2 cut(s)	734, 1032
PdmI	GAANNNNTTC	2 cut(s)	2209, 2442
PfeI	GAWTC	7 cut(s)	751, 1496, 1561, 1851, 2159, 2589, 2733
PflMI	CCANNNNNTGG	2 cut(s)	1808, 2503
PleI	GAGTC	5 cut(s)	94, 183, 1085, 1457, 1823
PpsI	GAGTC	5 cut(s)	94, 183, 1085, 1457, 1823
PscI	ACATGT	2 cut(s)	2166, 2358
Psp6I	CCWGG	4 cut(s)	128, 444, 1782, 2592
PspFI	CCCAGC	2 cut(s)	477, 2759
PspGI	CCWGG	4 cut(s)	128, 444, 1782, 2592
PspN4I	GGNNCC	3 cut(s)	879, 1107, 2095
PspPI	GGNCC	5 cut(s)	126, 434, 1038, 1674, 2494
PsrI	GAACNNNNNNTAC	2 cut(s)	1245, 1277
PstI	CTGCAG	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	2441
PsuI	RGATCY	1 cut(s)	1575
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	5 cut(s)	233, 290, 1263, 1508, 2144
RsaNI	GTAC	5 cut(s)	232, 289, 1262, 1507, 2143
RseI	CAYNNNNRTG	3 cut(s)	996, 1785, 2451
SalI	GTCGAC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	2222
SaqAI	TTAA	4 cut(s)	264, 600, 629, 1580
Sau3AI	GATC	8 cut(s)	643, 1224, 1351, 1575, 1752, 2316, 2334, 2346
Sau96I	GGNCC	5 cut(s)	126, 434, 1038, 1674, 2494
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	5 cut(s)	94, 184, 1086, 1458, 1823
ScrFI	CCNGG	4 cut(s)	130, 446, 1784, 2594
SduI	GDGCHC	6 cut(s)	150, 1434, 1588, 2604, 2670, 2760
SfaNI	GCATC	7 cut(s)	277, 292, 410, 927, 988, 1624, 2044
SfcI	CTRYAG	3 cut(s)	244, 2283, 2661
SfuI	TTCGAA	3 cut(s)	326, 1248, 1338
SinI	GGWCC	2 cut(s)	1038, 1674
SmiMI	CAYNNNNRTG	3 cut(s)	996, 1785, 2451
SmlI	CTYRAG	7 cut(s)	360, 1095, 1169, 1469, 1579, 1587, 1831
SmoI	CTYRAG	7 cut(s)	360, 1095, 1169, 1469, 1579, 1587, 1831
SphI	GCATGC	1 cut(s)	2803
SseBI	AGGCCT	1 cut(s)	1525
SsiI	CCGC	6 cut(s)	29, 37, 56, 513, 1109, 2392
StuI	AGGCCT	1 cut(s)	1525
StyD4I	CCNGG	4 cut(s)	128, 444, 1782, 2592
StyI	CCWWGG	1 cut(s)	1611
TaaI	ACNGT	6 cut(s)	1270, 1643, 1750, 2047, 2287, 2557
TaiI	ACGT	2 cut(s)	1053, 2505
TaqI	TCGA	7 cut(s)	44, 326, 1248, 1338, 1689, 1770, 2489
TaqII	GACCGA	1 cut(s)	1026
TatI	WGTACW	4 cut(s)	288, 1261, 1506, 2142
TauI	GCSGC	2 cut(s)	58, 1111
TfiI	GAWTC	7 cut(s)	751, 1496, 1561, 1851, 2159, 2589, 2733
Tru1I	TTAA	4 cut(s)	264, 600, 629, 1580
Tru9I	TTAA	4 cut(s)	264, 600, 629, 1580
TscAI	CASTG	7 cut(s)	890, 1332, 1819, 2050, 2270, 2604, 2760
TseFI	GTSAC	2 cut(s)	2261, 2674
Tsp45I	GTSAC	2 cut(s)	2261, 2674
TspGWI	ACGGA	1 cut(s)	2375
TspRI	CASTG	7 cut(s)	890, 1332, 1819, 2050, 2270, 2604, 2760
Van91I	CCANNNNNTGG	2 cut(s)	1808, 2503
Vha464I	CTTAAG	1 cut(s)	1579
VpaK11BI	GGWCC	2 cut(s)	1038, 1674
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	2 cut(s)	2380, 2547
XbaI	TCTAGA	1 cut(s)	1489
XceI	RCATGY	5 cut(s)	838, 2149, 2170, 2362, 2803
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	2209, 2442
ZrmI	AGTACT	1 cut(s)	290
Zsp2I	ATGCAT	2 cut(s)	840, 2028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.