Rmu_sc0003765.1_g000049

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003765.1
OG0018601
Physical Location & Seq
Forward (+)
171859 .. 174128
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
atgtggcagttgattgtccatggaccgaacgacgaagaagaatcgacggtgagaaggtccgactgctccggggagtttcagcgaattccggcgactccggccaccgattggcttgcatgtggtatgaaacctcatcttctcgtcatgaatttgctgagtcaagctgaagaagaattcggataccatcatccaatgggtggcatcacaattccttgcagtcaagacaccttccttgatgtcacttcccgcctaactgtccgtgagaggcgccggaggcaaactaaagaagtcaccatcccgcaagccgctgacgactgcttactcctccatgacatcgccgccttcagctcctcctcgaagagggagaacttgcgacttcagcccctccgtcgtagccattggcaccatgtactatcagaattggatctatggctccgcttgtgggtttcagtagctgggtcgaacaaggaggttgaagatggagaagaggacggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

165

Amino Acids

18.87

Weight (kDa)

5.44

Isoelectric Point (pI)

73.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 46 - 83 2.3e-06 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0389381 RchiOBHm_Chr5g0042821
rosa_laevigata RLG00000003038
rosa_multiflora Rmu_sc0003765.1_g000049
rosa_roxburghii Rroxscaffold_2G00138470 Rroxscaffold_4G00304200
rosa_rugosa Rorug03G0014100 Rorug05G0266500.1
rosa_samantha Rh7AG254600 Rh7DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 267, 402
AccB7I CCANNNNNTGG 2 cut(s) 108, 197
AciI CCGC 5 cut(s) 247, 299, 306, 339, 436
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 3 cut(s) 84, 148, 173
AcuI CTGAAG 3 cut(s) 186, 328, 362
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 4 cut(s) 108, 197, 360, 442
AgsI TTSAA 1 cut(s) 476
AluBI AGCT 3 cut(s) 164, 348, 455
AluI AGCT 3 cut(s) 164, 348, 455
AlwI GGATC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 3 cut(s) 84, 148, 173
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 23, 57
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 61, 283
AvaII GGWCC 2 cut(s) 23, 57
BanI GGYRCC 2 cut(s) 267, 402
BccI CCATC 3 cut(s) 192, 302, 473
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 496
BfoI RGCGCY 1 cut(s) 271
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 2 cut(s) 306, 339
BlsI GCNGC 2 cut(s) 307, 340
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 23, 57
BmgT120I GGNCC 2 cut(s) 23, 57
BmiI GGNNCC 3 cut(s) 269, 404, 434
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 19, 69
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 197, 360, 442
BseDI CCNNGG 2 cut(s) 19, 69
BseGI GGATG 2 cut(s) 187, 294
BseLI CCNNNNNNNGG 4 cut(s) 108, 197, 360, 442
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 3 cut(s) 314, 340, 343
BseYI CCCAGC 1 cut(s) 455
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 2 cut(s) 267, 402
BsiSI CCGG 4 cut(s) 69, 89, 98, 271
BslI CCNNNNNNNGG 4 cut(s) 108, 197, 360, 442
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 424
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 5 cut(s) 247, 299, 306, 339, 436
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 269, 404, 434
BspPI GGATC 1 cut(s) 432
BspT107I GGYRCC 2 cut(s) 267, 402
BssECI CCNNGG 2 cut(s) 19, 69
BssMI GATC 1 cut(s) 424
BssNI GRCGYC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 2 cut(s) 49, 256
Bst6I CTCTTC 2 cut(s) 353, 480
BstACI GRCGYC 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 114, 303
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 19
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 2 cut(s) 187, 294
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 3 cut(s) 98, 274, 379
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 319
BtsCI GGATG 2 cut(s) 187, 294
Cac8I GCNNGC 2 cut(s) 114, 303
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 144
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 23, 57
Csp6I GTAC 1 cut(s) 410
CviAII CATG 5 cut(s) 20, 117, 145, 329, 407
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 1 cut(s) 155
DinI GGCGCC 1 cut(s) 269
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 353, 480
EarI CTCTTC 2 cut(s) 353, 480
Eco130I CCWWGG 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 23, 57
Eco57I CTGAAG 3 cut(s) 186, 328, 362
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoRI GAATTC 2 cut(s) 84, 173
EcoT14I CCWWGG 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 269
EheI GGCGCC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 5 cut(s) 23, 120, 148, 332, 410
FaiI YATR 7 cut(s) 21, 118, 125, 146, 330, 408, 430
FatI CATG 5 cut(s) 19, 116, 144, 328, 406
FauI CCCGC 2 cut(s) 254, 306
Fnu4HI GCNGC 2 cut(s) 306, 339
FokI GGATG 2 cut(s) 174, 281
Fsp4HI GCNGC 2 cut(s) 306, 339
FspBI CTAG 1 cut(s) 496
GlaI GCGC 1 cut(s) 269
GluI GCNGC 2 cut(s) 306, 339
GsaI CCCAGC 1 cut(s) 459
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 1 cut(s) 101
HapII CCGG 4 cut(s) 69, 89, 98, 271
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 5 cut(s) 23, 120, 148, 332, 410
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 3 cut(s) 41, 94, 157
HpaII CCGG 4 cut(s) 69, 89, 98, 271
HphI GGTGA 2 cut(s) 61, 283
Hpy188I TCNGA 3 cut(s) 61, 179, 418
Hpy188III TCNNGA 2 cut(s) 145, 221
Hpy99I CGWCG 3 cut(s) 35, 49, 393
HpyAV CCTTC 3 cut(s) 48, 238, 352
HpyCH4III ACNGT 2 cut(s) 49, 256
HpyCH4V TGCA 2 cut(s) 116, 216
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 274, 379
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 5 cut(s) 23, 120, 148, 332, 410
HspAI GCGC 1 cut(s) 268
KasI GGCGCC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 3 cut(s) 71, 353, 438
LpnPI CCDG 5 cut(s) 82, 102, 111, 284, 441
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 496
MaeIII GTNAC 2 cut(s) 238, 289
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 8 cut(s) 47, 50, 128, 179, 182, 370, 488, 497
MflI RGATCY 1 cut(s) 424
MluCI AATT 5 cut(s) 84, 148, 173, 207, 419
Mly113I GGCGCC 1 cut(s) 268
MlyI GAGTC 2 cut(s) 88, 166
MmeI TCCRAC 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 4 cut(s) 69, 89, 98, 271
MspR9I CCNGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 98, 274, 379
NarI GGCGCC 1 cut(s) 268
NciI CCSGG 1 cut(s) 70
NcoI CCATGG 1 cut(s) 19
NdeII GATC 1 cut(s) 424
NlaIII CATG 5 cut(s) 23, 120, 148, 332, 410
NlaIV GGNNCC 3 cut(s) 269, 404, 434
NmuCI GTSAC 2 cut(s) 238, 289
NspI RCATGY 1 cut(s) 120
PagI TCATGA 1 cut(s) 144
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 2 cut(s) 108, 197
PkrI GCNGC 2 cut(s) 307, 340
PleI GAGTC 2 cut(s) 88, 165
PluTI GGCGCC 1 cut(s) 271
PpsI GAGTC 2 cut(s) 88, 165
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 3 cut(s) 269, 404, 434
PspPI GGNCC 2 cut(s) 23, 57
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SatI GCNGC 2 cut(s) 306, 339
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 2 cut(s) 23, 57
SchI GAGTC 2 cut(s) 88, 166
ScrFI CCNGG 1 cut(s) 70
SetI ASST 7 cut(s) 59, 133, 166, 230, 350, 457, 474
SfaNI GCATC 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 269
SinI GGWCC 2 cut(s) 23, 57
Sse9I AATT 5 cut(s) 84, 148, 173, 207, 419
SsiI CCGC 5 cut(s) 247, 299, 306, 339, 436
SspDI GGCGCC 1 cut(s) 267
SspMI CTAG 1 cut(s) 496
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 49, 256
TaqI TCGA 3 cut(s) 44, 356, 461
TaqII GACCGA 1 cut(s) 40
TasI AATT 5 cut(s) 84, 148, 173, 207, 419
TatI WGTACW 1 cut(s) 409
TauI GCSGC 2 cut(s) 308, 341
TfiI GAWTC 1 cut(s) 41
TseFI GTSAC 2 cut(s) 238, 289
Tsp45I GTSAC 2 cut(s) 238, 289
TspDTI ATGAA 2 cut(s) 140, 161
TspGWI ACGGA 2 cut(s) 248, 377
Van91I CCANNNNNTGG 2 cut(s) 108, 197
VpaK11BI GGWCC 2 cut(s) 23, 57
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 3 cut(s) 84, 148, 173
XceI RCATGY 1 cut(s) 120
XspI CTAG 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.