Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003952.1

Orthogroup ID

OG0020311

Physical Location & Seq

Genomic Coordinates Reverse (-)

10160 .. 11657

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgggcgaggtggttcttccagcagtgcaacactgcatcagttcgatggctgttttccagcaaactatgaacgattttcataacaatttcatggaggagattcgtcgggaatactgctcaaattttccaactactgcaacccctacatacagtggtccatggtatgctccagccgatcctacacttccaagcccttggaggggtttaattgatggctcatcgggttcattgtactactggaatcctgaaactcaccagacccagtatgagaggccatgtcaacaagctcctcaatatccaccgaccttcacttcctcagattactccgttcactcaaaccctcaaccatacgcctccgataaccaccacggtgcagcaaagcagtccaaagctgacaagctcatgttcttctactttgacgtggtagaatcacttccaacagagccactggattccagtgattggaaatcactgcatagctgttatgatgcacaaatttcagtttttgagtccaatctacagacaaagttgggggctgccaaagtattcatggttggatctggtgcactcggaagtgagttgttaaaaaatgttcccctgatgggagtttcaggtggcaaccaggggaagctaacaaccactgatgatgatgtaattgagaagagtaacctcaataggcagttcctcttctgtgattggaagactaggcaggcaaaatatacaattaccgcttctgctgctgcaccaataaatccctgtctcaacattgtagctttgcagaatggagttggccctgaaagtgagactctgtttgatgacacttactcgctttatgttgaccaaaggtgcttatatttccagaagacagttcttgagtcaggtactcttcgtgcaaaatgcaacactcaagtggttattcctcacgtaatagaaaatgatggtaactcgagagatcttccagagaagcaagcacccatgtgtactgtgcactcatttccatacaacattgacaactatttgacatgggctcgatctgagtttgcgggtttgctggagaaaactccacctaaaatgcatgcacttttatccaagccaagtgaaaatactgctgcagtgagcaatgctggggatgcacaggccaggtataccttggagcctgttctggagtacctggccagagaaagatgcgaaacattccaagattgtatttcctgggcaagtgaaaaatgttacccgactgaagtctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033554 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

416

Amino Acids

46.45

Weight (kDa)

5.05

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	62 - 92	1.5e-07	WW domain
ThiF	PF00899	162 - 332	2.1e-27	ThiF family
UBA_E1_SCCH	PF10585	333 - 409	1.1e-12	Ubiquitin-activating enzyme, SCCH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020311)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33711 FvH4_5g30251
rosa_multiflora	Rmu_sc0003952.1_g000004 Rmu_sc0009850.1_g000014 Rmu_sc0016852.1_g000011
rosa_roxburghii	Rroxscaffold_2G00106470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	1145
AciI	CCGC	2 cut(s)	729, 1043
AclWI	GGATC	2 cut(s)	170, 565
AcoI	YGGCCR	1 cut(s)	1173
AcsI	RAATTY	2 cut(s)	121, 495
AfaI	GTAC	4 cut(s)	233, 883, 982, 1169
AfiI	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	4 cut(s)	621, 1139, 1170, 1211
AleI	CACNNNNGTG	3 cut(s)	369, 908, 976
AluBI	AGCT	6 cut(s)	287, 392, 400, 480, 631, 773
AluI	AGCT	6 cut(s)	287, 392, 400, 480, 631, 773
Alw21I	GWGCWC	2 cut(s)	568, 990
Alw26I	GTCTC	2 cut(s)	764, 797
Alw44I	GTGCAC	2 cut(s)	564, 986
AlwI	GGATC	2 cut(s)	170, 565
Ama87I	CYCGRG	1 cut(s)	946
AoxI	GGCC	4 cut(s)	272, 790, 1137, 1173
ApaLI	GTGCAC	2 cut(s)	564, 986
ApeKI	GCWGC	5 cut(s)	374, 536, 737, 740, 1109
ApoI	RAATTY	2 cut(s)	121, 495
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	155, 791
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	946
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	568, 990
BalI	TGGCCA	1 cut(s)	1175
BanII	GRGCYC	1 cut(s)	1030
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
BbsI	GAAGAC	2 cut(s)	707, 869
Bbv12I	GWGCWC	2 cut(s)	568, 990
BbvI	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
BccI	CCATC	4 cut(s)	40, 206, 595, 932
BciT130I	CCWGG	4 cut(s)	623, 1141, 1172, 1213
BcoDI	GTCTC	2 cut(s)	764, 797
BfaI	CTAG	1 cut(s)	705
BfmI	CTRYAG	2 cut(s)	518, 1110
BglII	AGATCT	1 cut(s)	952
BisI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
BlsI	GCNGC	5 cut(s)	376, 538, 739, 742, 1111
Bme1390I	CCNGG	4 cut(s)	623, 1141, 1172, 1213
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	155, 791
BmiI	GGNNCC	1 cut(s)	1155
BmrFI	CCNGG	4 cut(s)	623, 1141, 1172, 1213
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	4 cut(s)	45, 478, 1120, 1175
BmuI	ACTGGG	1 cut(s)	256
BoxI	GACNNNNGTC	1 cut(s)	1241
BpiI	GAAGAC	2 cut(s)	707, 869
BpmI	CTGGAG	3 cut(s)	153, 1073, 1184
BpuEI	CTTGAG	2 cut(s)	891, 893
BsaAI	YACGTR	1 cut(s)	925
BsaJI	CCNNGG	6 cut(s)	158, 194, 367, 622, 1149, 1212
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
Bse1I	ACTGG	4 cut(s)	242, 262, 453, 456
Bse3DI	GCAATG	1 cut(s)	1126
BseBI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
BseDI	CCNNGG	6 cut(s)	158, 194, 367, 622, 1149, 1212
BseGI	GGATG	1 cut(s)	1135
BseLI	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
BseMI	GCAATG	1 cut(s)	1126
BseMII	CTCAG	2 cut(s)	330, 1026
BseNI	ACTGG	4 cut(s)	242, 262, 453, 456
BseRI	GAGGAG	2 cut(s)	110, 279
BseSI	GKGCMC	2 cut(s)	568, 990
BseXI	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
BseYI	CCCAGC	1 cut(s)	1124
BsgI	GTGCAG	2 cut(s)	393, 726
BshFI	GGCC	4 cut(s)	274, 792, 1139, 1175
BsiHKAI	GWGCWC	2 cut(s)	568, 990
BsiHKCI	CYCGRG	1 cut(s)	946
BslI	CCNNNNNNNGG	4 cut(s)	199, 200, 462, 602
BsmAI	GTCTC	2 cut(s)	764, 797
BsnI	GGCC	4 cut(s)	274, 792, 1139, 1175
BsoBI	CYCGRG	1 cut(s)	946
Bsp1286I	GDGCHC	3 cut(s)	568, 990, 1030
Bsp143I	GATC	4 cut(s)	175, 557, 952, 1031
Bsp19I	CCATGG	1 cut(s)	158
BspACI	CCGC	2 cut(s)	729, 1043
BspANI	GGCC	4 cut(s)	274, 792, 1139, 1175
BspCNI	CTCAG	2 cut(s)	329, 1027
BspHI	TCATGA	1 cut(s)	1247
BspLI	GGNNCC	1 cut(s)	1155
BspMAI	CTGCAG	1 cut(s)	1114
BspPI	GGATC	2 cut(s)	170, 565
BsrDI	GCAATG	1 cut(s)	1126
BsrI	ACTGG	4 cut(s)	242, 262, 453, 456
BssECI	CCNNGG	6 cut(s)	158, 194, 367, 622, 1149, 1212
BssMI	GATC	4 cut(s)	175, 557, 952, 1031
BssNAI	GTATAC	1 cut(s)	1146
BssT1I	CCWWGG	3 cut(s)	158, 194, 1149
Bst1107I	GTATAC	1 cut(s)	1146
Bst2UI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
Bst4CI	ACNGT	4 cut(s)	152, 371, 868, 985
Bst6I	CTCTTC	3 cut(s)	656, 692, 891
BstBAI	YACGTR	1 cut(s)	925
BstC8I	GCNNGC	3 cut(s)	711, 969, 1077
BstDEI	CTNAG	2 cut(s)	316, 1035
BstDSI	CCRYGG	2 cut(s)	158, 367
BstF5I	GGATG	1 cut(s)	1135
BstKTI	GATC	4 cut(s)	178, 560, 955, 1034
BstMAI	GTCTC	2 cut(s)	764, 797
BstMBI	GATC	4 cut(s)	175, 557, 952, 1031
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 1130
BstNI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
BstNSI	RCATGY	1 cut(s)	1079
BstPAI	GACNNNNGTC	1 cut(s)	1241
BstSCI	CCNGG	4 cut(s)	621, 1139, 1170, 1211
BstSFI	CTRYAG	2 cut(s)	518, 1110
BstSLI	GKGCMC	2 cut(s)	568, 990
BstV1I	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
BstV2I	GAAGAC	2 cut(s)	707, 869
BstX2I	RGATCY	2 cut(s)	557, 952
BstXI	CCANNNNNNTGG	1 cut(s)	195
BstYI	RGATCY	2 cut(s)	557, 952
BstZ17I	GTATAC	1 cut(s)	1146
BsuRI	GGCC	4 cut(s)	274, 792, 1139, 1175
BtgI	CCRYGG	2 cut(s)	158, 367
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	1135
BtsI	GCAGTG	4 cut(s)	30, 31, 470, 1119
BtsIMutI	CAGTG	8 cut(s)	30, 31, 157, 446, 463, 470, 639, 1119
Cac8I	GCNNGC	3 cut(s)	711, 969, 1077
CciI	TCATGA	1 cut(s)	1247
Cfr13I	GGNCC	2 cut(s)	155, 791
Csp6I	GTAC	4 cut(s)	232, 882, 981, 1168
CviAII	CATG	9 cut(s)	91, 159, 276, 403, 550, 976, 1023, 1076, 1248
CviQI	GTAC	4 cut(s)	232, 882, 981, 1168
DdeI	CTNAG	2 cut(s)	316, 1035
DpnI	GATC	4 cut(s)	177, 559, 954, 1033
DpnII	GATC	4 cut(s)	175, 557, 952, 1031
EaeI	YGGCCR	1 cut(s)	1173
Eam1104I	CTCTTC	3 cut(s)	656, 692, 891
EarI	CTCTTC	3 cut(s)	656, 692, 891
Eco130I	CCWWGG	3 cut(s)	158, 194, 1149
Eco24I	GRGCYC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	946
EcoRII	CCWGG	4 cut(s)	621, 1139, 1170, 1211
EcoT14I	CCWWGG	3 cut(s)	158, 194, 1149
EcoT22I	ATGCAT	1 cut(s)	1077
EcoT38I	GRGCYC	1 cut(s)	1030
ErhI	CCWWGG	3 cut(s)	158, 194, 1149
FaeI	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
FatI	CATG	9 cut(s)	90, 158, 275, 402, 549, 975, 1022, 1075, 1247
FauI	CCCGC	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
FokI	GGATG	1 cut(s)	1142
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
FspBI	CTAG	1 cut(s)	705
GluI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
GsaI	CCCAGC	1 cut(s)	1128
GsuI	CTGGAG	3 cut(s)	153, 1073, 1184
HaeIII	GGCC	4 cut(s)	274, 792, 1139, 1175
Hin1II	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
HincII	GTYRAC	2 cut(s)	281, 838
HindII	GTYRAC	2 cut(s)	281, 838
HinfI	GANTC	7 cut(s)	100, 241, 428, 452, 509, 805, 875
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	7 cut(s)	281, 331, 566, 838, 981, 988, 1146
Hpy188I	TCNGA	4 cut(s)	319, 358, 572, 1036
Hpy188III	TCNNGA	8 cut(s)	107, 245, 859, 872, 948, 959, 1163, 1248
Hpy8I	GTNNAC	7 cut(s)	281, 331, 566, 838, 981, 988, 1146
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	4 cut(s)	152, 371, 868, 985
HpyCH4IV	ACGT	2 cut(s)	420, 924
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 1130
HpyF3I	CTNAG	2 cut(s)	316, 1035
HpySE526I	ACGT	2 cut(s)	420, 924
Hsp92II	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
Kzo9I	GATC	4 cut(s)	175, 557, 952, 1031
LmnI	GCTCC	3 cut(s)	172, 292, 1153
Lsp1109I	GCAGC	5 cut(s)	386, 523, 724, 727, 1096
LweI	GCATC	4 cut(s)	45, 478, 1120, 1175
MaeI	CTAG	1 cut(s)	705
MaeII	ACGT	2 cut(s)	420, 924
MaeIII	GTNAC	3 cut(s)	665, 941, 1229
MalI	GATC	4 cut(s)	177, 559, 954, 1033
MboI	GATC	4 cut(s)	175, 557, 952, 1031
MboII	GAAGA	8 cut(s)	8, 400, 673, 679, 712, 874, 878, 947
MflI	RGATCY	2 cut(s)	557, 952
MhlI	GDGCHC	3 cut(s)	568, 990, 1030
MlsI	TGGCCA	1 cut(s)	1175
MluCI	AATT	6 cut(s)	85, 121, 207, 495, 654, 723
MluNI	TGGCCA	1 cut(s)	1175
MlyI	GAGTC	3 cut(s)	518, 799, 884
MmeI	TCCRAC	3 cut(s)	152, 461, 535
Mox20I	TGGCCA	1 cut(s)	1175
Mph1103I	ATGCAT	1 cut(s)	1077
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	1175
MseI	TTAA	2 cut(s)	206, 584
MslI	CAYNNNNRTG	3 cut(s)	369, 908, 976
Msp20I	TGGCCA	1 cut(s)	1175
MspR9I	CCNGG	4 cut(s)	623, 1141, 1172, 1213
MvaI	CCWGG	4 cut(s)	623, 1141, 1172, 1213
MwoI	GCNNNNNNNGC	2 cut(s)	737, 1130
NcoI	CCATGG	1 cut(s)	158
NdeII	GATC	4 cut(s)	175, 557, 952, 1031
NlaIII	CATG	9 cut(s)	94, 162, 279, 406, 553, 979, 1026, 1079, 1251
NlaIV	GGNNCC	1 cut(s)	1155
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	1 cut(s)	1079
OliI	CACNNNNGTG	3 cut(s)	369, 908, 976
PaeI	GCATGC	1 cut(s)	1079
PaeR7I	CTCGAG	1 cut(s)	946
PagI	TCATGA	1 cut(s)	1247
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	100, 241, 428, 452
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	376, 538, 739, 742, 1111
PleI	GAGTC	3 cut(s)	517, 799, 883
PpsI	GAGTC	3 cut(s)	517, 799, 883
Ppu21I	YACGTR	1 cut(s)	925
PshAI	GACNNNNGTC	1 cut(s)	1241
Psp6I	CCWGG	4 cut(s)	621, 1139, 1170, 1211
PspFI	CCCAGC	1 cut(s)	1124
PspGI	CCWGG	4 cut(s)	621, 1139, 1170, 1211
PspN4I	GGNNCC	1 cut(s)	1155
PspPI	GGNCC	2 cut(s)	155, 791
PstI	CTGCAG	1 cut(s)	1114
PsuI	RGATCY	2 cut(s)	557, 952
RsaI	GTAC	4 cut(s)	233, 883, 982, 1169
RsaNI	GTAC	4 cut(s)	232, 882, 981, 1168
RseI	CAYNNNNRTG	3 cut(s)	369, 908, 976
SaqAI	TTAA	2 cut(s)	206, 584
SatI	GCNGC	5 cut(s)	375, 537, 738, 741, 1110
Sau3AI	GATC	4 cut(s)	175, 557, 952, 1031
Sau96I	GGNCC	2 cut(s)	155, 791
SchI	GAGTC	3 cut(s)	518, 799, 884
ScrFI	CCNGG	4 cut(s)	623, 1141, 1172, 1213
SduI	GDGCHC	3 cut(s)	568, 990, 1030
SfaNI	GCATC	4 cut(s)	45, 478, 1120, 1175
SfcI	CTRYAG	2 cut(s)	518, 1110
Sfr274I	CTCGAG	1 cut(s)	946
SinI	GGWCC	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	946
SmiMI	CAYNNNNRTG	3 cut(s)	369, 908, 976
SmlI	CTYRAG	3 cut(s)	872, 906, 946
SmoI	CTYRAG	3 cut(s)	872, 906, 946
SphI	GCATGC	1 cut(s)	1079
Sse9I	AATT	6 cut(s)	85, 121, 207, 495, 654, 723
SsiI	CCGC	2 cut(s)	729, 1043
SspMI	CTAG	1 cut(s)	705
StyD4I	CCNGG	4 cut(s)	621, 1139, 1170, 1211
StyI	CCWWGG	3 cut(s)	158, 194, 1149
TaaI	ACNGT	4 cut(s)	152, 371, 868, 985
TaiI	ACGT	2 cut(s)	423, 927
TaqI	TCGA	3 cut(s)	44, 947, 1030
TasI	AATT	6 cut(s)	85, 121, 207, 495, 654, 723
TatI	WGTACW	2 cut(s)	231, 980
TfiI	GAWTC	4 cut(s)	100, 241, 428, 452
Tru1I	TTAA	2 cut(s)	206, 584
Tru9I	TTAA	2 cut(s)	206, 584
TscAI	CASTG	8 cut(s)	30, 38, 157, 453, 463, 477, 646, 1119
TseI	GCWGC	5 cut(s)	374, 536, 737, 740, 1109
TspDTI	ATGAA	5 cut(s)	68, 79, 83, 216, 538
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	8 cut(s)	30, 38, 157, 453, 463, 477, 646, 1119
Van91I	CCANNNNNTGG	1 cut(s)	462
VneI	GTGCAC	2 cut(s)	564, 986
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	2 cut(s)	121, 495
XceI	RCATGY	1 cut(s)	1079
XcmI	CCANNNNNNNNNTGG	2 cut(s)	547, 1147
XhoI	CTCGAG	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	1145
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	705
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.