protease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g01090 |
| rosa_chinensis | RchiOBHm_Chr4g0387651 |
| rosa_laevigata | RLG00000010103 |
| rosa_multiflora | Rmu_sc0003953.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00334320 |
| rosa_rugosa | Rorug03G0312200 |
| rosa_samantha | Rh4AG017500 Rh4BG012300 Rh4CG018700 Rh4DG013300 |
| rosa_wichuraiana | Rw4G001130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 248 |
| Acc36I | ACCTGC | 1 cut(s) | 280 |
| AccI | GTMKAC | 1 cut(s) | 1552 |
| AccII | CGCG | 2 cut(s) | 1263, 1299 |
| AciI | CCGC | 2 cut(s) | 263, 1206 |
| AclWI | GGATC | 1 cut(s) | 1554 |
| AcoI | YGGCCR | 1 cut(s) | 1207 |
| AcsI | RAATTY | 3 cut(s) | 125, 1078, 1539 |
| AcuI | CTGAAG | 2 cut(s) | 810, 1503 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1418, 1431 |
| AflIII | ACRYGT | 1 cut(s) | 457 |
| AgsI | TTSAA | 2 cut(s) | 161, 1286 |
| AhlI | ACTAGT | 3 cut(s) | 608, 671, 722 |
| AjiI | CACGTC | 1 cut(s) | 592 |
| AjnI | CCWGG | 2 cut(s) | 60, 896 |
| AluBI | AGCT | 7 cut(s) | 79, 357, 405, 436, 473, 483, 1154 |
| AluI | AGCT | 7 cut(s) | 79, 357, 405, 436, 473, 483, 1154 |
| Alw21I | GWGCWC | 3 cut(s) | 1297, 1411, 1571 |
| Alw26I | GTCTC | 1 cut(s) | 582 |
| Alw44I | GTGCAC | 1 cut(s) | 1293 |
| AlwI | GGATC | 1 cut(s) | 1554 |
| Ama87I | CYCGRG | 2 cut(s) | 958, 1466 |
| AoxI | GGCC | 5 cut(s) | 27, 94, 1207, 1420, 1433 |
| ApaLI | GTGCAC | 1 cut(s) | 1293 |
| ApeKI | GCWGC | 3 cut(s) | 223, 1159, 1487 |
| ApoI | RAATTY | 3 cut(s) | 125, 1078, 1539 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 437 |
| AspLEI | GCGC | 1 cut(s) | 1263 |
| AspS9I | GGNCC | 3 cut(s) | 95, 1421, 1434 |
| AsuC2I | CCSGG | 1 cut(s) | 1432 |
| AsuHPI | GGTGA | 2 cut(s) | 76, 319 |
| AvaI | CYCGRG | 2 cut(s) | 958, 1466 |
| BaeGI | GKGCMC | 1 cut(s) | 1297 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 486, 519 |
| BauI | CACGAG | 1 cut(s) | 993 |
| Bbv12I | GWGCWC | 3 cut(s) | 1297, 1411, 1571 |
| BbvI | GCAGC | 3 cut(s) | 235, 1171, 1474 |
| BccI | CCATC | 5 cut(s) | 677, 698, 724, 1099, 1286 |
| BciT130I | CCWGG | 2 cut(s) | 62, 898 |
| BciVI | GTATCC | 1 cut(s) | 1519 |
| BcnI | CCSGG | 1 cut(s) | 1432 |
| BcoDI | GTCTC | 1 cut(s) | 582 |
| BcuI | ACTAGT | 3 cut(s) | 608, 671, 722 |
| BfaI | CTAG | 9 cut(s) | 320, 609, 672, 723, 750, 927, 1116, 1587, 1598 |
| BfmI | CTRYAG | 2 cut(s) | 221, 370 |
| BfuAI | ACCTGC | 1 cut(s) | 280 |
| BfuI | GTATCC | 1 cut(s) | 1519 |
| BisI | GCNGC | 4 cut(s) | 224, 1160, 1207, 1488 |
| BlpI | GCTNAGC | 1 cut(s) | 1155 |
| BlsI | GCNGC | 4 cut(s) | 225, 1161, 1208, 1489 |
| Bme1390I | CCNGG | 3 cut(s) | 62, 898, 1432 |
| BmeT110I | CYCGRG | 2 cut(s) | 958, 1466 |
| BmgBI | CACGTC | 1 cut(s) | 592 |
| BmgT120I | GGNCC | 3 cut(s) | 95, 1421, 1434 |
| BmiI | GGNNCC | 2 cut(s) | 1423, 1436 |
| BmrFI | CCNGG | 3 cut(s) | 62, 898, 1432 |
| BmsI | GCATC | 7 cut(s) | 313, 523, 724, 855, 979, 1049, 1183 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 467, 499, 1596, 1628 |
| BpmI | CTGGAG | 3 cut(s) | 373, 919, 1577 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1155 |
| BpuMI | CCSGG | 1 cut(s) | 1432 |
| Bsa29I | ATCGAT | 1 cut(s) | 702 |
| BsaAI | YACGTR | 1 cut(s) | 1102 |
| BsaJI | CCNNGG | 5 cut(s) | 18, 896, 1347, 1392, 1430 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1550, 1580 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1418, 1431 |
| Bse118I | RCCGGY | 1 cut(s) | 1209 |
| Bse1I | ACTGG | 5 cut(s) | 356, 496, 832, 1021, 1560 |
| BseBI | CCWGG | 2 cut(s) | 62, 898 |
| BseCI | ATCGAT | 1 cut(s) | 702 |
| BseDI | CCNNGG | 5 cut(s) | 18, 896, 1347, 1392, 1430 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1418, 1431 |
| BseMII | CTCAG | 1 cut(s) | 465 |
| BseNI | ACTGG | 5 cut(s) | 356, 496, 832, 1021, 1560 |
| BseRI | GAGGAG | 3 cut(s) | 35, 38, 1604 |
| BseSI | GKGCMC | 1 cut(s) | 1297 |
| BseX3I | CGGCCG | 1 cut(s) | 1207 |
| BseXI | GCAGC | 3 cut(s) | 235, 1171, 1474 |
| BseYI | CCCAGC | 1 cut(s) | 1425 |
| Bsh1236I | CGCG | 2 cut(s) | 1263, 1299 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1210 |
| BshFI | GGCC | 5 cut(s) | 29, 96, 1209, 1422, 1435 |
| BshVI | ATCGAT | 1 cut(s) | 702 |
| BsiEI | CGRYCG | 1 cut(s) | 1210 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1297, 1411, 1571 |
| BsiHKCI | CYCGRG | 2 cut(s) | 958, 1466 |
| BsiSI | CCGG | 3 cut(s) | 1169, 1210, 1432 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1418, 1431 |
| BsmAI | GTCTC | 1 cut(s) | 582 |
| BsmBI | CGTCTC | 1 cut(s) | 582 |
| BsnI | GGCC | 5 cut(s) | 29, 96, 1209, 1422, 1435 |
| BsoBI | CYCGRG | 2 cut(s) | 958, 1466 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1297, 1411, 1571 |
| Bsp1407I | TGTACA | 1 cut(s) | 806 |
| Bsp143I | GATC | 3 cut(s) | 699, 1546, 1609 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1155 |
| BspACI | CCGC | 2 cut(s) | 263, 1206 |
| BspANI | GGCC | 5 cut(s) | 29, 96, 1209, 1422, 1435 |
| BspCNI | CTCAG | 1 cut(s) | 466 |
| BspDI | ATCGAT | 1 cut(s) | 702 |
| BspFNI | CGCG | 2 cut(s) | 1263, 1299 |
| BspHI | TCATGA | 1 cut(s) | 1027 |
| BspLI | GGNNCC | 2 cut(s) | 1423, 1436 |
| BspMAI | CTGCAG | 1 cut(s) | 225 |
| BspMI | ACCTGC | 1 cut(s) | 280 |
| BspPI | GGATC | 1 cut(s) | 1554 |
| BsrFI | RCCGGY | 1 cut(s) | 1209 |
| BsrGI | TGTACA | 1 cut(s) | 806 |
| BsrI | ACTGG | 5 cut(s) | 356, 496, 832, 1021, 1560 |
| BssAI | RCCGGY | 1 cut(s) | 1209 |
| BssECI | CCNNGG | 5 cut(s) | 18, 896, 1347, 1392, 1430 |
| BssMI | GATC | 3 cut(s) | 699, 1546, 1609 |
| BssNAI | GTATAC | 1 cut(s) | 1553 |
| BssSI | CACGAG | 1 cut(s) | 993 |
| BssT1I | CCWWGG | 2 cut(s) | 1347, 1392 |
| Bst1107I | GTATAC | 1 cut(s) | 1553 |
| Bst2BI | CACGAG | 1 cut(s) | 993 |
| Bst2UI | CCWGG | 2 cut(s) | 62, 898 |
| Bst4CI | ACNGT | 4 cut(s) | 307, 1091, 1406, 1507 |
| Bst6I | CTCTTC | 2 cut(s) | 879, 1047 |
| BstAUI | TGTACA | 1 cut(s) | 806 |
| BstBAI | YACGTR | 1 cut(s) | 1102 |
| BstC8I | GCNNGC | 6 cut(s) | 204, 287, 328, 359, 1064, 1297 |
| BstDEI | CTNAG | 3 cut(s) | 429, 474, 1155 |
| BstEII | GGTNACC | 1 cut(s) | 1016 |
| BstFNI | CGCG | 2 cut(s) | 1263, 1299 |
| BstHHI | GCGC | 1 cut(s) | 1263 |
| BstKTI | GATC | 3 cut(s) | 702, 1549, 1612 |
| BstMAI | GTCTC | 1 cut(s) | 582 |
| BstMBI | GATC | 3 cut(s) | 699, 1546, 1609 |
| BstMCI | CGRYCG | 1 cut(s) | 1210 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 354, 470, 1165, 1267 |
| BstNI | CCWGG | 2 cut(s) | 62, 898 |
| BstNSI | RCATGY | 2 cut(s) | 461, 1066 |
| BstPI | GGTNACC | 1 cut(s) | 1016 |
| BstSCI | CCNGG | 3 cut(s) | 60, 896, 1430 |
| BstSFI | CTRYAG | 2 cut(s) | 221, 370 |
| BstSLI | GKGCMC | 1 cut(s) | 1297 |
| BstUI | CGCG | 2 cut(s) | 1263, 1299 |
| BstV1I | GCAGC | 3 cut(s) | 235, 1171, 1474 |
| BstZ17I | GTATAC | 1 cut(s) | 1553 |
| BstZI | CGGCCG | 1 cut(s) | 1207 |
| Bsu15I | ATCGAT | 1 cut(s) | 702 |
| BsuI | GTATCC | 1 cut(s) | 1519 |
| BsuRI | GGCC | 5 cut(s) | 29, 96, 1209, 1422, 1435 |
| BsuTUI | ATCGAT | 1 cut(s) | 702 |
| BtrI | CACGTC | 1 cut(s) | 592 |
| BtsIMutI | CAGTG | 4 cut(s) | 349, 489, 1231, 1411 |
| BveI | ACCTGC | 1 cut(s) | 280 |
| Cac8I | GCNNGC | 6 cut(s) | 204, 287, 328, 359, 1064, 1297 |
| CciI | TCATGA | 1 cut(s) | 1027 |
| CfoI | GCGC | 1 cut(s) | 1263 |
| Cfr10I | RCCGGY | 1 cut(s) | 1209 |
| Cfr13I | GGNCC | 3 cut(s) | 95, 1421, 1434 |
| ClaI | ATCGAT | 1 cut(s) | 702 |
| CviAII | CATG | 8 cut(s) | 167, 248, 458, 697, 797, 1028, 1063, 1632 |
| DdeI | CTNAG | 3 cut(s) | 429, 474, 1155 |
| DpnI | GATC | 3 cut(s) | 701, 1548, 1611 |
| DpnII | GATC | 3 cut(s) | 699, 1546, 1609 |
| DraI | TTTAAA | 1 cut(s) | 1048 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 248 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 248 |
| EaeI | YGGCCR | 1 cut(s) | 1207 |
| EagI | CGGCCG | 1 cut(s) | 1207 |
| Eam1104I | CTCTTC | 2 cut(s) | 879, 1047 |
| EarI | CTCTTC | 2 cut(s) | 879, 1047 |
| EclXI | CGGCCG | 1 cut(s) | 1207 |
| Eco130I | CCWWGG | 2 cut(s) | 1347, 1392 |
| Eco52I | CGGCCG | 1 cut(s) | 1207 |
| Eco57I | CTGAAG | 2 cut(s) | 810, 1503 |
| Eco88I | CYCGRG | 2 cut(s) | 958, 1466 |
| Eco91I | GGTNACC | 1 cut(s) | 1016 |
| EcoO109I | RGGNCCY | 1 cut(s) | 95 |
| EcoO65I | GGTNACC | 1 cut(s) | 1016 |
| EcoRI | GAATTC | 1 cut(s) | 125 |
| EcoRII | CCWGG | 2 cut(s) | 60, 896 |
| EcoT14I | CCWWGG | 2 cut(s) | 1347, 1392 |
| EcoT22I | ATGCAT | 1 cut(s) | 1064 |
| ErhI | CCWWGG | 2 cut(s) | 1347, 1392 |
| Esp3I | CGTCTC | 1 cut(s) | 582 |
| FaeI | CATG | 8 cut(s) | 170, 251, 461, 700, 800, 1031, 1066, 1635 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 26, 58 |
| FatI | CATG | 8 cut(s) | 166, 247, 457, 696, 796, 1027, 1062, 1631 |
| FblI | GTMKAC | 1 cut(s) | 1552 |
| Fnu4HI | GCNGC | 4 cut(s) | 224, 1160, 1207, 1488 |
| Fsp4HI | GCNGC | 4 cut(s) | 224, 1160, 1207, 1488 |
| FspBI | CTAG | 9 cut(s) | 320, 609, 672, 723, 750, 927, 1116, 1587, 1598 |
| GlaI | GCGC | 1 cut(s) | 1262 |
| GluI | GCNGC | 4 cut(s) | 224, 1160, 1207, 1488 |
| GsaI | CCCAGC | 1 cut(s) | 1429 |
| GsuI | CTGGAG | 3 cut(s) | 373, 919, 1577 |
| HaeIII | GGCC | 5 cut(s) | 29, 96, 1209, 1422, 1435 |
| HapII | CCGG | 3 cut(s) | 1169, 1210, 1432 |
| HhaI | GCGC | 1 cut(s) | 1263 |
| Hin1II | CATG | 8 cut(s) | 170, 251, 461, 700, 800, 1031, 1066, 1635 |
| Hin6I | GCGC | 1 cut(s) | 1261 |
| HinP1I | GCGC | 1 cut(s) | 1261 |
| HindIII | AAGCTT | 1 cut(s) | 434 |
| HpaII | CCGG | 3 cut(s) | 1169, 1210, 1432 |
| HphI | GGTGA | 2 cut(s) | 76, 319 |
| Hpy166II | GTNNAC | 7 cut(s) | 303, 367, 394, 595, 1295, 1370, 1553 |
| Hpy188I | TCNGA | 6 cut(s) | 179, 443, 852, 1378, 1453, 1522 |
| Hpy188III | TCNNGA | 5 cut(s) | 451, 1028, 1305, 1316, 1598 |
| Hpy8I | GTNNAC | 7 cut(s) | 303, 367, 394, 595, 1295, 1370, 1553 |
| Hpy99I | CGWCG | 2 cut(s) | 341, 873 |
| HpyAV | CCTTC | 4 cut(s) | 31, 167, 200, 1595 |
| HpyCH4III | ACNGT | 4 cut(s) | 307, 1091, 1406, 1507 |
| HpyCH4IV | ACGT | 4 cut(s) | 591, 913, 1101, 1291 |
| HpyCH4V | TGCA | 7 cut(s) | 46, 223, 536, 737, 838, 1062, 1295 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 354, 470, 1165, 1267 |
| HpyF3I | CTNAG | 3 cut(s) | 429, 474, 1155 |
| HpySE526I | ACGT | 4 cut(s) | 591, 913, 1101, 1291 |
| Hsp92II | CATG | 8 cut(s) | 170, 251, 461, 700, 800, 1031, 1066, 1635 |
| HspAI | GCGC | 1 cut(s) | 1261 |
| Kzo9I | GATC | 3 cut(s) | 699, 1546, 1609 |
| LmnI | GCTCC | 5 cut(s) | 354, 488, 1171, 1414, 1495 |
| Lsp1109I | GCAGC | 3 cut(s) | 235, 1171, 1474 |
| LweI | GCATC | 7 cut(s) | 313, 523, 724, 855, 979, 1049, 1183 |
| MaeI | CTAG | 9 cut(s) | 320, 609, 672, 723, 750, 927, 1116, 1587, 1598 |
| MaeII | ACGT | 4 cut(s) | 591, 913, 1101, 1291 |
| MaeIII | GTNAC | 2 cut(s) | 64, 1016 |
| MalI | GATC | 3 cut(s) | 701, 1548, 1611 |
| MboI | GATC | 3 cut(s) | 699, 1546, 1609 |
| MboII | GAAGA | 9 cut(s) | 738, 865, 893, 896, 1046, 1064, 1087, 1535, 1547 |
| MfeI | CAATTG | 1 cut(s) | 498 |
| MhlI | GDGCHC | 3 cut(s) | 1297, 1411, 1571 |
| MluCI | AATT | 9 cut(s) | 125, 498, 781, 874, 1078, 1110, 1415, 1539, 1591 |
| MlyI | GAGTC | 8 cut(s) | 179, 236, 275, 590, 1238, 1310, 1352, 1397 |
| MmeI | TCCRAC | 2 cut(s) | 294, 1431 |
| Mph1103I | ATGCAT | 1 cut(s) | 1064 |
| MroXI | GAANNNNTTC | 1 cut(s) | 437 |
| MseI | TTAA | 2 cut(s) | 90, 1047 |
| MslI | CAYNNNNRTG | 2 cut(s) | 912, 1377 |
| MspA1I | CMGCKG | 1 cut(s) | 473 |
| MspI | CCGG | 3 cut(s) | 1169, 1210, 1432 |
| MspR9I | CCNGG | 3 cut(s) | 62, 898, 1432 |
| MunI | CAATTG | 1 cut(s) | 498 |
| MvaI | CCWGG | 2 cut(s) | 62, 898 |
| MvnI | CGCG | 2 cut(s) | 1263, 1299 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 354, 470, 1165, 1267 |
| NciI | CCSGG | 1 cut(s) | 1432 |
| NdeII | GATC | 3 cut(s) | 699, 1546, 1609 |
| NlaIII | CATG | 8 cut(s) | 170, 251, 461, 700, 800, 1031, 1066, 1635 |
| NlaIV | GGNNCC | 2 cut(s) | 1423, 1436 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| NsiI | ATGCAT | 1 cut(s) | 1064 |
| NspI | RCATGY | 2 cut(s) | 461, 1066 |
| PaeI | GCATGC | 1 cut(s) | 1066 |
| PaeR7I | CTCGAG | 2 cut(s) | 958, 1466 |
| PagI | TCATGA | 1 cut(s) | 1027 |
| PciI | ACATGT | 1 cut(s) | 457 |
| PdmI | GAANNNNTTC | 1 cut(s) | 437 |
| PfeI | GAWTC | 5 cut(s) | 518, 557, 632, 659, 1250 |
| PkrI | GCNGC | 4 cut(s) | 225, 1161, 1208, 1489 |
| PleI | GAGTC | 8 cut(s) | 178, 236, 274, 590, 1237, 1309, 1351, 1396 |
| PpsI | GAGTC | 8 cut(s) | 178, 236, 274, 590, 1237, 1309, 1351, 1396 |
| Ppu21I | YACGTR | 1 cut(s) | 1102 |
| PscI | ACATGT | 1 cut(s) | 457 |
| Psp6I | CCWGG | 2 cut(s) | 60, 896 |
| PspEI | GGTNACC | 1 cut(s) | 1016 |
| PspFI | CCCAGC | 1 cut(s) | 1425 |
| PspGI | CCWGG | 2 cut(s) | 60, 896 |
| PspN4I | GGNNCC | 2 cut(s) | 1423, 1436 |
| PspPI | GGNCC | 3 cut(s) | 95, 1421, 1434 |
| PspXI | VCTCGAGB | 2 cut(s) | 958, 1466 |
| PstI | CTGCAG | 1 cut(s) | 225 |
| PvuII | CAGCTG | 1 cut(s) | 473 |
| RseI | CAYNNNNRTG | 2 cut(s) | 912, 1377 |
| SaqAI | TTAA | 2 cut(s) | 90, 1047 |
| SatI | GCNGC | 4 cut(s) | 224, 1160, 1207, 1488 |
| Sau3AI | GATC | 3 cut(s) | 699, 1546, 1609 |
| Sau96I | GGNCC | 3 cut(s) | 95, 1421, 1434 |
| SchI | GAGTC | 8 cut(s) | 179, 236, 275, 590, 1238, 1310, 1352, 1397 |
| ScrFI | CCNGG | 3 cut(s) | 62, 898, 1432 |
| SduI | GDGCHC | 3 cut(s) | 1297, 1411, 1571 |
| SfaNI | GCATC | 7 cut(s) | 313, 523, 724, 855, 979, 1049, 1183 |
| SfcI | CTRYAG | 2 cut(s) | 221, 370 |
| Sfr274I | CTCGAG | 2 cut(s) | 958, 1466 |
| SlaI | CTCGAG | 2 cut(s) | 958, 1466 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 912, 1377 |
| SmlI | CTYRAG | 2 cut(s) | 958, 1466 |
| SmoI | CTYRAG | 2 cut(s) | 958, 1466 |
| SpeI | ACTAGT | 3 cut(s) | 608, 671, 722 |
| SphI | GCATGC | 1 cut(s) | 1066 |
| Sse9I | AATT | 9 cut(s) | 125, 498, 781, 874, 1078, 1110, 1415, 1539, 1591 |
| SsiI | CCGC | 2 cut(s) | 263, 1206 |
| SspI | AATATT | 2 cut(s) | 544, 583 |
| SspMI | CTAG | 9 cut(s) | 320, 609, 672, 723, 750, 927, 1116, 1587, 1598 |
| StyD4I | CCNGG | 3 cut(s) | 60, 896, 1430 |
| StyI | CCWWGG | 2 cut(s) | 1347, 1392 |
| TaaI | ACNGT | 4 cut(s) | 307, 1091, 1406, 1507 |
| TaiI | ACGT | 4 cut(s) | 594, 916, 1104, 1294 |
| TaqI | TCGA | 6 cut(s) | 123, 681, 702, 959, 1177, 1467 |
| TaqII | GACCGA | 1 cut(s) | 32 |
| TasI | AATT | 9 cut(s) | 125, 498, 781, 874, 1078, 1110, 1415, 1539, 1591 |
| TatI | WGTACW | 4 cut(s) | 366, 611, 785, 806 |
| TauI | GCSGC | 1 cut(s) | 1209 |
| TfiI | GAWTC | 5 cut(s) | 518, 557, 632, 659, 1250 |
| Tru1I | TTAA | 2 cut(s) | 90, 1047 |
| Tru9I | TTAA | 2 cut(s) | 90, 1047 |
| TscAI | CASTG | 4 cut(s) | 356, 496, 1231, 1411 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| TseI | GCWGC | 3 cut(s) | 223, 1159, 1487 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| TspDTI | ATGAA | 7 cut(s) | 71, 785, 840, 968, 1226, 1395, 1473 |
| TspGWI | ACGGA | 2 cut(s) | 354, 886 |
| TspRI | CASTG | 4 cut(s) | 356, 496, 1231, 1411 |
| VneI | GTGCAC | 1 cut(s) | 1293 |
| XapI | RAATTY | 3 cut(s) | 125, 1078, 1539 |
| XbaI | TCTAGA | 1 cut(s) | 1597 |
| XceI | RCATGY | 2 cut(s) | 461, 1066 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 673, 1539 |
| XhoI | CTCGAG | 2 cut(s) | 958, 1466 |
| XmiI | GTMKAC | 1 cut(s) | 1552 |
| XmnI | GAANNNNTTC | 1 cut(s) | 437 |
| XspI | CTAG | 9 cut(s) | 320, 609, 672, 723, 750, 927, 1116, 1587, 1598 |
| Zsp2I | ATGCAT | 1 cut(s) | 1064 |