Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018019

Physical Location & Seq

Genomic Coordinates Forward (+)

1635790 .. 1641269

Gene Structure 5480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2292 bp

ATGACAATTTTAAATCGGCACCGAATGTTAAAACAAAGTTCTCGATACTGTGATGTGACCAACGAGCTCTTAAGGTATATAGGCTCTGATCTTGGTGAAATGAAGATACTAAAGGCTGATGTTGGTGCACTTGACAATTTTGAAGTGCTCGAATTCCTAAAATCCAAAGGGGCTTCAAAGAATGATCTATCACGGGTGGCAAGAGTTACACAATCGGAGTATAAGGTTTTCGATTATTTGGTTGATACTCCTGCTGGTACTCACACAAGAGAGAGTGTTGAAAAGTTCAAGGAGAAGTGTAGACAATATGACCTTGGGAATGATAAGATCCTCAATATTATTAACACTAGGCCAGCTTCAGTGGTTGAAATATATGCGTGTGCTCTTCTCCTTACTAACATGATAATTGGTGAAGTCTATGGCTATCTAAAGGCAATCTGTTGCCAAGGACCTGGTGCAGGGAACCTTATCGTGGAGGATAATGCTGATGAGCTAGTAGAGCTGGTTGCAGAGGTCTTGACTCCTCCAACTGCACCATCCCCTACACCTGAAGCAGGTATGTATATCTTTATGACTGAGGAGGAGGCCAACAAGAAGGTCTTGCAGTACGAGAATGTCCTGGTGACAAACAGAGAGCTTCATATTCTTAAAGGCCCTCGCTTTCTAAACGACATCATCATCGAATTCTACTTCCTCCATATTTCTAATGCCCTCCTTCAATCCCATGAGTCGTTCCGAGATGACATCCTTCTGGTTTCGCCTGCCCTCTCATTCTTTCTGCAGCAGGATTTTGGGGATGACTCCCATGTCAAAGACTTTGCGGAGTCCAACAAAGTAGATAGCAAGCAGGTTGTAATGTTTACGGTGAATAACAACCTAGATGCCGGCAGGAACGACGGAGGAAGCCACTGGAGCTTGCTGGTGTACTACAGAAAATCAAATACATTCGTACACTATGACAGCTTGGGATGTAATGGTTCTTTTGCTAAGAAGCTTTTCCGAGCAGTCAAGAAACATGTGGCAACACCAGCTGAGAGTAGCTCCACCACTGGTACAGTTGTTCGTGGAGATGTGGATTCTACCAATACTGATGCAATCAATATTGGAGATGTGGATTCTAACAACACTACGACAACTAATATTGGAGAAGTGGACTCTAACAATACTAGTACAATCAATGGAGATAGAGATTCTACCGATACTACTATGGTCGCAGATTCTACCAATACTAGTGTGGTCGATGGAGATTGTACCATGATCGATGGAGATACTACTAATACTAGTATGATGGATGCAGATTTTTCTTCTAGTAGTAGTAGAGTTGGTGGACATTATACTAATTGTACTGGAGTTCATGGACATTGTACAAGGTTTGATAATGATGAAAACCAGTTGCAAAGATATAATCAGAAGAAACAAAGGATGCGACGGAATTGGGAAGAAGAGGATATGTCCTGGAGGTATCATCAACGTGGTTTTCCCCGTAGTTGGTTGTGGAATGAGGATTATATGAACTCGAGGTCTGGTTATACTCGTTGGGATAGGGATGCTCGTGGGTTTCTTTTGCCAAGAGGTTACCAGTATCATGAGGAAGATGATGATTTTAAAGAAGAGGGATGCATGCCGAAGCAGAAGAATTTTTATGACTGTGGTTTGTACGTGATGGAAATTGCTAGGGTGGTCTGTGAATGGTACTACCTTGATGACGAAGCTAAGCAGCAACAGCCGGAGCATCGAGATTTTTTCTGTAAGTTGGGGGGTGGCGGCCGGTTTCCCAACATCAGTGAGTCTGTTCATACTTCTTTGGAATCCACAATGCGCGATATGCTCTTGTCCATCATTCAACAACGTGCACGCGAGTCTGGAATACATCTTGATTTATTTTCTTCTGATGATGATGAGTCCAAGGATGACGATGTTCTTGGTTTACATTCTGATGAAAATGAGTCCAAGGATGATGACAGTGCTCCCCAATTCGGCTCCCAGCCCAAGTATGATGATGAAGAAACACCGGTGGATAGTGTTGTTCGTGGTTTGTTTTATGGTAATAAAGCCAATGAAAAGAACCACCAATTCGGCCCCCAGCCCCGGCCCCAACAATATAAGTCGGAGGATGAAACACTCGATGATTGTGGTGGTGTTGCTGCTCCCCCTCCACAATCTGTATCCTCAACTTCAGAAGATGAGCCAGAAGAAATTTGGGAACCTATACTAGAGGACAGGTGCTCATTGTTGAGTAAATCTAGCAATTATCTAGAAGGAGATGATCTCCTTGCTAAAAAACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005886 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009360 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030424 GO:0030425 GO:0030880 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0036477 GO:0042575 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097447 GO:0097458 GO:0097659 GO:0097747 GO:0120025 GO:0120038 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

763

Amino Acids

86.26

Weight (kDa)

4.75

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb4	PF03874	44 - 127	9.3e-07	RNA polymerase Rpb4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018019)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01090
rosa_chinensis	RchiOBHm_Chr4g0387651
rosa_laevigata	RLG00000010103
rosa_multiflora	Rmu_sc0003953.1_g000007
rosa_roxburghii	Rroxscaffold_5G00334320
rosa_rugosa	Rorug03G0312200
rosa_samantha	Rh4AG017500 Rh4BG012300 Rh4CG018700 Rh4DG013300
rosa_wichuraiana	Rw4G001130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	806
Acc36I	ACCTGC	2 cut(s)	545, 838
AccB1I	GGYRCC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	2 cut(s)	1821, 1857
AciI	CCGC	2 cut(s)	821, 1764
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	1765
AcsI	RAATTY	4 cut(s)	152, 683, 1636, 2196
AcuI	CTGAAG	3 cut(s)	342, 570, 2160
AfiI	CCNNNNNNNGG	6 cut(s)	458, 472, 554, 1488, 1976, 2088
AflII	CTTAAG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	1015
AgeI	ACCGGT	1 cut(s)	2011
AgsI	TTSAA	7 cut(s)	143, 177, 281, 289, 368, 719, 1844
AhlI	ACTAGT	3 cut(s)	1166, 1229, 1280
AjnI	CCWGG	3 cut(s)	451, 618, 1454
Alw21I	GWGCWC	7 cut(s)	69, 130, 150, 385, 1855, 1969, 2228
Alw44I	GTGCAC	2 cut(s)	126, 1851
AlwI	GGATC	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	1516
AoxI	GGCC	6 cut(s)	350, 585, 652, 1765, 2077, 2090
ApaLI	GTGCAC	2 cut(s)	126, 1851
ApeKI	GCWGC	3 cut(s)	781, 1717, 2144
ApoI	RAATTY	4 cut(s)	152, 683, 1636, 2196
AsiGI	ACCGGT	1 cut(s)	2011
Asp700I	GAANNNNTTC	1 cut(s)	995
AspLEI	GCGC	1 cut(s)	1821
AspS9I	GGNCC	4 cut(s)	449, 653, 2078, 2091
AsuC2I	CCSGG	1 cut(s)	2089
AsuHPI	GGTGA	4 cut(s)	107, 422, 634, 877
AvaI	CYCGRG	1 cut(s)	1516
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	2 cut(s)	130, 1855
BaeI	ACNNNNGTAYC	2 cut(s)	1044, 1077
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	1551
Bbv12I	GWGCWC	7 cut(s)	69, 130, 150, 385, 1855, 1969, 2228
BbvI	GCAGC	3 cut(s)	793, 1729, 2131
BccI	CCATC	6 cut(s)	544, 1235, 1256, 1282, 1657, 1844
BciT130I	CCWGG	3 cut(s)	453, 620, 1456
BciVI	GTATCC	1 cut(s)	2176
BcnI	CCSGG	1 cut(s)	2089
BcuI	ACTAGT	3 cut(s)	1166, 1229, 1280
BfmI	CTRYAG	2 cut(s)	779, 928
BfrI	CTTAAG	1 cut(s)	70
BfuAI	ACCTGC	2 cut(s)	545, 838
BfuI	GTATCC	1 cut(s)	2176
BisI	GCNGC	4 cut(s)	782, 1718, 1765, 2145
BlpI	GCTNAGC	1 cut(s)	1713
BlsI	GCNGC	4 cut(s)	783, 1719, 1766, 2146
Bme1390I	CCNGG	4 cut(s)	453, 620, 1456, 2089
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	1516
BmgT120I	GGNCC	4 cut(s)	449, 653, 2078, 2091
BmiI	GGNNCC	6 cut(s)	20, 464, 1981, 2080, 2093, 2205
BmrFI	CCNGG	4 cut(s)	453, 620, 1456, 2089
BmsI	GCATC	7 cut(s)	871, 1081, 1282, 1413, 1537, 1607, 1741
BplI	GAGNNNNNCTC	4 cut(s)	1025, 1057, 2253, 2285
BpmI	CTGGAG	3 cut(s)	931, 1368, 1477
Bpu1102I	GCTNAGC	1 cut(s)	1713
BpuMI	CCSGG	1 cut(s)	2089
Bsa29I	ATCGAT	1 cut(s)	1260
BsaAI	YACGTR	1 cut(s)	1660
BsaJI	CCNNGG	5 cut(s)	313, 445, 1905, 1950, 2087
BsaWI	WCCGGW	1 cut(s)	2011
Bsc4I	CCNNNNNNNGG	6 cut(s)	458, 472, 554, 1488, 1976, 2088
Bse118I	RCCGGY	3 cut(s)	884, 1767, 2011
Bse1I	ACTGG	5 cut(s)	914, 1054, 1351, 1390, 1579
BseBI	CCWGG	3 cut(s)	453, 620, 1456
BseCI	ATCGAT	1 cut(s)	1260
BseDI	CCNNGG	5 cut(s)	313, 445, 1905, 1950, 2087
BseLI	CCNNNNNNNGG	6 cut(s)	458, 472, 554, 1488, 1976, 2088
BseMII	CTCAG	2 cut(s)	567, 1023
BseNI	ACTGG	5 cut(s)	914, 1054, 1351, 1390, 1579
BseRI	GAGGAG	3 cut(s)	513, 593, 596
BseSI	GKGCMC	2 cut(s)	130, 1855
BseX3I	CGGCCG	1 cut(s)	1765
BseXI	GCAGC	3 cut(s)	793, 1729, 2131
BseYI	CCCAGC	2 cut(s)	1983, 2082
BsgI	GTGCAG	2 cut(s)	477, 516
Bsh1236I	CGCG	2 cut(s)	1821, 1857
Bsh1285I	CGRYCG	1 cut(s)	1768
BshFI	GGCC	6 cut(s)	352, 587, 654, 1767, 2079, 2092
BshNI	GGYRCC	1 cut(s)	18
BshTI	ACCGGT	1 cut(s)	2011
BshVI	ATCGAT	1 cut(s)	1260
BsiEI	CGRYCG	1 cut(s)	1768
BsiHKAI	GWGCWC	7 cut(s)	69, 130, 150, 385, 1855, 1969, 2228
BsiHKCI	CYCGRG	1 cut(s)	1516
BsiSI	CCGG	5 cut(s)	885, 1727, 1768, 2012, 2089
BslI	CCNNNNNNNGG	6 cut(s)	458, 472, 554, 1488, 1976, 2088
BsnI	GGCC	6 cut(s)	352, 587, 654, 1767, 2079, 2092
BsoBI	CYCGRG	1 cut(s)	1516
Bsp1286I	GDGCHC	7 cut(s)	69, 130, 150, 385, 1855, 1969, 2228
Bsp1407I	TGTACA	1 cut(s)	1364
Bsp143I	GATC	5 cut(s)	88, 184, 327, 1257, 2266
Bsp1720I	GCTNAGC	1 cut(s)	1713
BspACI	CCGC	2 cut(s)	821, 1764
BspANI	GGCC	6 cut(s)	352, 587, 654, 1767, 2079, 2092
BspCNI	CTCAG	2 cut(s)	568, 1024
BspDI	ATCGAT	1 cut(s)	1260
BspFNI	CGCG	2 cut(s)	1821, 1857
BspHI	TCATGA	1 cut(s)	1585
BspLI	GGNNCC	6 cut(s)	20, 464, 1981, 2080, 2093, 2205
BspMAI	CTGCAG	1 cut(s)	783
BspMI	ACCTGC	2 cut(s)	545, 838
BspPI	GGATC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	18
BspTI	CTTAAG	1 cut(s)	70
BsrFI	RCCGGY	3 cut(s)	884, 1767, 2011
BsrGI	TGTACA	1 cut(s)	1364
BsrI	ACTGG	5 cut(s)	914, 1054, 1351, 1390, 1579
BssAI	RCCGGY	3 cut(s)	884, 1767, 2011
BssECI	CCNNGG	5 cut(s)	313, 445, 1905, 1950, 2087
BssMI	GATC	5 cut(s)	88, 184, 327, 1257, 2266
BssSI	CACGAG	1 cut(s)	1551
BssT1I	CCWWGG	4 cut(s)	313, 445, 1905, 1950
Bst2BI	CACGAG	1 cut(s)	1551
Bst2UI	CCWGG	3 cut(s)	453, 620, 1456
Bst4CI	ACNGT	5 cut(s)	50, 865, 1057, 1649, 1964
Bst6I	CTCTTC	3 cut(s)	390, 1437, 1605
BstAFI	CTTAAG	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	1364
BstBAI	YACGTR	1 cut(s)	1660
BstC8I	GCNNGC	7 cut(s)	354, 762, 845, 886, 917, 1622, 1855
BstDEI	CTNAG	4 cut(s)	576, 987, 1032, 1713
BstEII	GGTNACC	1 cut(s)	1574
BstENI	CCTNNNNNAGG	2 cut(s)	456, 552
BstFNI	CGCG	2 cut(s)	1821, 1857
BstHHI	GCGC	1 cut(s)	1821
BstKTI	GATC	5 cut(s)	91, 187, 330, 1260, 2269
BstMBI	GATC	5 cut(s)	88, 184, 327, 1257, 2266
BstMCI	CGRYCG	1 cut(s)	1768
BstMWI	GCNNNNNNNGC	5 cut(s)	499, 912, 1028, 1723, 1825
BstNI	CCWGG	3 cut(s)	453, 620, 1456
BstNSI	RCATGY	2 cut(s)	1019, 1624
BstPI	GGTNACC	1 cut(s)	1574
BstSCI	CCNGG	4 cut(s)	451, 618, 1454, 2087
BstSFI	CTRYAG	2 cut(s)	779, 928
BstSLI	GKGCMC	2 cut(s)	130, 1855
BstUI	CGCG	2 cut(s)	1821, 1857
BstV1I	GCAGC	3 cut(s)	793, 1729, 2131
BstX2I	RGATCY	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	327
BstZI	CGGCCG	1 cut(s)	1765
Bsu15I	ATCGAT	1 cut(s)	1260
BsuI	GTATCC	1 cut(s)	2176
BsuRI	GGCC	6 cut(s)	352, 587, 654, 1767, 2079, 2092
BsuTUI	ATCGAT	1 cut(s)	1260
BtsIMutI	CAGTG	5 cut(s)	366, 907, 1047, 1789, 1969
BveI	ACCTGC	2 cut(s)	545, 838
Cac8I	GCNNGC	7 cut(s)	354, 762, 845, 886, 917, 1622, 1855
CciI	TCATGA	1 cut(s)	1585
CfoI	GCGC	1 cut(s)	1821
Cfr10I	RCCGGY	3 cut(s)	884, 1767, 2011
Cfr13I	GGNCC	4 cut(s)	449, 653, 2078, 2091
ClaI	ATCGAT	1 cut(s)	1260
CsiI	ACCWGGT	1 cut(s)	451
CspAI	ACCGGT	1 cut(s)	2011
CviAII	CATG	9 cut(s)	400, 725, 806, 1016, 1255, 1355, 1586, 1621, 2289
DdeI	CTNAG	4 cut(s)	576, 987, 1032, 1713
DpnI	GATC	5 cut(s)	90, 186, 329, 1259, 2268
DpnII	GATC	5 cut(s)	88, 184, 327, 1257, 2266
DraI	TTTAAA	2 cut(s)	12, 1606
DrdI	GACNNNNNNGTC	1 cut(s)	806
DseDI	GACNNNNNNGTC	1 cut(s)	806
EaeI	YGGCCR	1 cut(s)	1765
EagI	CGGCCG	1 cut(s)	1765
Eam1104I	CTCTTC	3 cut(s)	390, 1437, 1605
EarI	CTCTTC	3 cut(s)	390, 1437, 1605
Ecl136II	GAGCTC	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	1765
Eco130I	CCWWGG	4 cut(s)	313, 445, 1905, 1950
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	449
Eco52I	CGGCCG	1 cut(s)	1765
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	3 cut(s)	342, 570, 2160
Eco88I	CYCGRG	1 cut(s)	1516
Eco91I	GGTNACC	1 cut(s)	1574
EcoICRI	GAGCTC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	2 cut(s)	456, 552
EcoO109I	RGGNCCY	2 cut(s)	449, 653
EcoO65I	GGTNACC	1 cut(s)	1574
EcoRI	GAATTC	2 cut(s)	152, 683
EcoRII	CCWGG	3 cut(s)	451, 618, 1454
EcoT14I	CCWWGG	4 cut(s)	313, 445, 1905, 1950
EcoT22I	ATGCAT	1 cut(s)	1622
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	4 cut(s)	313, 445, 1905, 1950
FaeI	CATG	9 cut(s)	403, 728, 809, 1019, 1258, 1358, 1589, 1624, 2292
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	9 cut(s)	399, 724, 805, 1015, 1254, 1354, 1585, 1620, 2288
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	782, 1718, 1765, 2145
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	782, 1718, 1765, 2145
GlaI	GCGC	1 cut(s)	1820
GluI	GCNGC	4 cut(s)	782, 1718, 1765, 2145
GsaI	CCCAGC	2 cut(s)	1987, 2086
GsuI	CTGGAG	3 cut(s)	931, 1368, 1477
HaeIII	GGCC	6 cut(s)	352, 587, 654, 1767, 2079, 2092
HapII	CCGG	5 cut(s)	885, 1727, 1768, 2012, 2089
HhaI	GCGC	1 cut(s)	1821
Hin1II	CATG	9 cut(s)	403, 728, 809, 1019, 1258, 1358, 1589, 1624, 2292
Hin6I	GCGC	1 cut(s)	1819
HinP1I	GCGC	1 cut(s)	1819
HindIII	AAGCTT	1 cut(s)	992
HpaII	CCGG	5 cut(s)	885, 1727, 1768, 2012, 2089
HphI	GGTGA	4 cut(s)	107, 422, 634, 877
Hpy166II	GTNNAC	9 cut(s)	128, 302, 861, 925, 952, 1153, 1328, 1853, 1928
Hpy188I	TCNGA	9 cut(s)	88, 217, 737, 1001, 1410, 1891, 1936, 2110, 2179
Hpy188III	TCNNGA	8 cut(s)	42, 517, 1009, 1586, 1736, 1863, 1874, 2255
Hpy8I	GTNNAC	9 cut(s)	128, 302, 861, 925, 952, 1153, 1328, 1853, 1928
Hpy99I	CGWCG	2 cut(s)	899, 1431
HpyAV	CCTTC	4 cut(s)	589, 725, 758, 2252
HpyCH4III	ACNGT	5 cut(s)	50, 865, 1057, 1649, 1964
HpyCH4IV	ACGT	3 cut(s)	1471, 1659, 1849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	499, 912, 1028, 1723, 1825
HpyF3I	CTNAG	4 cut(s)	576, 987, 1032, 1713
HpySE526I	ACGT	3 cut(s)	1471, 1659, 1849
Hsp92II	CATG	9 cut(s)	403, 728, 809, 1019, 1258, 1358, 1589, 1624, 2292
HspAI	GCGC	1 cut(s)	1819
KroI	GCCGGC	1 cut(s)	884
KroNI	GCCGGC	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	88, 184, 327, 1257, 2266
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	6 cut(s)	912, 1046, 1729, 1972, 1985, 2152
Lsp1109I	GCAGC	3 cut(s)	793, 1729, 2131
LweI	GCATC	7 cut(s)	871, 1081, 1282, 1413, 1537, 1607, 1741
MabI	ACCWGGT	1 cut(s)	451
MaeII	ACGT	3 cut(s)	1471, 1659, 1849
MaeIII	GTNAC	4 cut(s)	55, 205, 622, 1574
MalI	GATC	5 cut(s)	90, 186, 329, 1259, 2268
MboI	GATC	5 cut(s)	88, 184, 327, 1257, 2266
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	7 cut(s)	69, 130, 150, 385, 1855, 1969, 2228
MlyI	GAGTC	9 cut(s)	514, 737, 794, 833, 1148, 1796, 1868, 1910, 1955
MmeI	TCCRAC	3 cut(s)	551, 852, 2088
Mph1103I	ATGCAT	1 cut(s)	1622
MroNI	GCCGGC	1 cut(s)	884
MroXI	GAANNNNTTC	1 cut(s)	995
MseI	TTAA	6 cut(s)	11, 29, 71, 342, 648, 1605
MslI	CAYNNNNRTG	2 cut(s)	1470, 1935
MspA1I	CMGCKG	1 cut(s)	1031
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	5 cut(s)	885, 1727, 1768, 2012, 2089
MspR9I	CCNGG	4 cut(s)	453, 620, 1456, 2089
MvaI	CCWGG	3 cut(s)	453, 620, 1456
MvnI	CGCG	2 cut(s)	1821, 1857
MwoI	GCNNNNNNNGC	5 cut(s)	499, 912, 1028, 1723, 1825
NaeI	GCCGGC	1 cut(s)	886
NciI	CCSGG	1 cut(s)	2089
NdeII	GATC	5 cut(s)	88, 184, 327, 1257, 2266
NgoMIV	GCCGGC	1 cut(s)	884
NlaIII	CATG	9 cut(s)	403, 728, 809, 1019, 1258, 1358, 1589, 1624, 2292
NlaIV	GGNNCC	6 cut(s)	20, 464, 1981, 2080, 2093, 2205
NmuCI	GTSAC	2 cut(s)	55, 622
NsiI	ATGCAT	1 cut(s)	1622
NspI	RCATGY	2 cut(s)	1019, 1624
PaeI	GCATGC	1 cut(s)	1624
PaeR7I	CTCGAG	1 cut(s)	1516
PagI	TCATGA	1 cut(s)	1585
PciI	ACATGT	1 cut(s)	1015
PciSI	GCTCTTC	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	995
PfeI	GAWTC	5 cut(s)	1076, 1115, 1190, 1217, 1808
PfoI	TCCNGGA	1 cut(s)	1454
PinAI	ACCGGT	1 cut(s)	2011
PkrI	GCNGC	4 cut(s)	783, 1719, 1766, 2146
PleI	GAGTC	9 cut(s)	514, 736, 794, 832, 1148, 1795, 1867, 1909, 1954
PpsI	GAGTC	9 cut(s)	514, 736, 794, 832, 1148, 1795, 1867, 1909, 1954
Ppu21I	YACGTR	1 cut(s)	1660
PpuMI	RGGWCCY	1 cut(s)	449
PscI	ACATGT	1 cut(s)	1015
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	3 cut(s)	451, 618, 1454
PspEI	GGTNACC	1 cut(s)	1574
PspFI	CCCAGC	2 cut(s)	1983, 2082
PspGI	CCWGG	3 cut(s)	451, 618, 1454
PspN4I	GGNNCC	6 cut(s)	20, 464, 1981, 2080, 2093, 2205
PspPI	GGNCC	4 cut(s)	449, 653, 2078, 2091
PspPPI	RGGWCCY	1 cut(s)	449
PspXI	VCTCGAGB	1 cut(s)	1516
PstI	CTGCAG	1 cut(s)	783
PsuI	RGATCY	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	1031
RseI	CAYNNNNRTG	2 cut(s)	1470, 1935
SacI	GAGCTC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	6 cut(s)	11, 29, 71, 342, 648, 1605
SatI	GCNGC	4 cut(s)	782, 1718, 1765, 2145
Sau3AI	GATC	5 cut(s)	88, 184, 327, 1257, 2266
Sau96I	GGNCC	4 cut(s)	449, 653, 2078, 2091
SchI	GAGTC	9 cut(s)	514, 737, 794, 833, 1148, 1796, 1868, 1910, 1955
ScrFI	CCNGG	4 cut(s)	453, 620, 1456, 2089
SduI	GDGCHC	7 cut(s)	69, 130, 150, 385, 1855, 1969, 2228
SexAI	ACCWGGT	1 cut(s)	451
SfaNI	GCATC	7 cut(s)	871, 1081, 1282, 1413, 1537, 1607, 1741
SfcI	CTRYAG	2 cut(s)	779, 928
Sfr274I	CTCGAG	1 cut(s)	1516
SgrAI	CRCCGGYG	1 cut(s)	2011
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	1516
SmiMI	CAYNNNNRTG	2 cut(s)	1470, 1935
SmlI	CTYRAG	2 cut(s)	70, 1516
SmoI	CTYRAG	2 cut(s)	70, 1516
SpeI	ACTAGT	3 cut(s)	1166, 1229, 1280
SphI	GCATGC	1 cut(s)	1624
SsiI	CCGC	2 cut(s)	821, 1764
SspI	AATATT	3 cut(s)	337, 1102, 1141
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	451, 618, 1454, 2087
StyI	CCWWGG	4 cut(s)	313, 445, 1905, 1950
TaaI	ACNGT	5 cut(s)	50, 865, 1057, 1649, 1964
TaiI	ACGT	3 cut(s)	1474, 1662, 1852
TaqI	TCGA	9 cut(s)	43, 150, 231, 681, 1239, 1260, 1517, 1735, 2124
TatI	WGTACW	4 cut(s)	924, 1169, 1343, 1364
TauI	GCSGC	1 cut(s)	1767
TfiI	GAWTC	5 cut(s)	1076, 1115, 1190, 1217, 1808
Tru1I	TTAA	6 cut(s)	11, 29, 71, 342, 648, 1605
Tru9I	TTAA	6 cut(s)	11, 29, 71, 342, 648, 1605
TscAI	CASTG	5 cut(s)	366, 914, 1054, 1789, 1969
TseFI	GTSAC	2 cut(s)	55, 622
TseI	GCWGC	3 cut(s)	781, 1717, 2144
Tsp45I	GTSAC	2 cut(s)	55, 622
TspGWI	ACGGA	2 cut(s)	912, 1444
TspRI	CASTG	5 cut(s)	366, 914, 1054, 1789, 1969
Vha464I	CTTAAG	1 cut(s)	70
VneI	GTGCAC	2 cut(s)	126, 1851
VpaK11BI	GGWCC	1 cut(s)	449
XagI	CCTNNNNNAGG	2 cut(s)	456, 552
XapI	RAATTY	4 cut(s)	152, 683, 1636, 2196
XbaI	TCTAGA	1 cut(s)	2254
XceI	RCATGY	2 cut(s)	1019, 1624
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1231, 2196
XhoI	CTCGAG	1 cut(s)	1516
XmiI	GTMKAC	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	995
Zsp2I	ATGCAT	1 cut(s)	1622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.