Rmu_sc0003967.1_g000004

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003967.1
OG0011574
Physical Location & Seq
Reverse (-)
13906 .. 16551
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1932 bp
atggccaaatcagcttctaaatgcctcttcttattctttctgtctttcctctttagctgttcatcaggaactctggtaggtttctcctaccatgttagcggaaacactacaacttcatcaccaagtagaacaatatcatttctgaagcgaaacaagattgccccatctcagattcgcgtctttgttgaagatcatagaattttaagaactctgtccaacactggtgtagctgttgatctctacttgaatgaggcccttgttcaaaatatcataaattccaaatcttcttcaatctcagggctgaaatcctatataatgccctttctctcacaagtaaagatcaaaagcatcgtagcaactagtggtgactatacaagaaaatatgctctctccatgcttttatcgaccctgaaatctatacactcagtcctctctagtttacctgctgacagcagaattaaggtctcggtggcatttcctttgtcatttttagagaatatgagcacctcacatggaagagacctgcataggatctgtgactacatcaaacaagtgaaatctgctgtcattgtagaagccaatattgatggagaattgagtatgggtgaaaggtttgtccattcgatgatcgaaagagccagccttgcaaattctcttcttccttgcactgatgtccccatggttttgacagtcaagagtccagcagttcccagtgcaactgaagtagctgcattcgccgataaggtgtccaaagctttagaaaccaacactcacattataagtagcatagttggtctatatgcacaagtatcttcaatggaagattttgcacagaaagagatgaaaagagcagaagaacagatctttccttcttttcgccgagtactctcaagaatcttccacctcaagacaactttacatgaagcagatgactcaccaacaatcttccctacaactcccatatccacaacaccaccaatatccaccactccatatattcctaccccaactattgtcactgtcccctctacaaacacagtaccaatagctccattgaatcctataccctccaccacacctattactgtgccctccacaaaccctgcggattcaccagtaccagaagccaatcctaccacagcaccccccatcacagtcccagggaatccagtaataaccaaccctgtcacaacttacccggcaccagctggagtcgttcctgtcacgacacctgtcacgaatcctgtggcacctcctgcaacaagtactaatgctcctgcagctccaggacagagttggtgtgtggccaagagtggagcatcggaaacagcagttcaggctgctttggactatgcttgtggaaaggtagactgttcacagctccagcaaggtgggagttgttacaatccaactactctccaaaaccatgcctcatatgcattcaacagctattatcagaagaatccagttgcaactagctgtgactttggaggagttgccacaatagttactactaatccaagcactggttcatgtgcttacctatcatcgtcgtcgtcgtcatcaacaccaacaactccatctcctccggcatcaacaactccatctcctccagcatcatcaactccatcccctcccgtatcaacaactccaactccactgccagcaacaacaactcctccagcaccaacatttacatcatttccaccaccaggggaaggtgtatcaggctctggtactccacccccttcagttttaaattcaagcaacccagcagcttcaggaaccatgccaccatttgggctcgacagccctcctagtcttaacacaacatacagctcaacatcctcatcagctagcttgcggccctttgttagttacatctttttggcaacagccttggttactagaaaaatcgttcttaacatgtag

Protein Analysis

643

Amino Acids

67.49

Weight (kDa)

8.68

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 432 - 501 8.2e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
Acc36I ACCTGC 2 cut(s) 451, 531
AccB1I GGYRCC 2 cut(s) 1201, 1249
AccB7I CCANNNNNTGG 2 cut(s) 1526, 1799
AccI GTMKAC 1 cut(s) 1368
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 99, 1106, 1864
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 2 cut(s) 3, 1305
AcsI RAATTY 4 cut(s) 198, 274, 649, 1759
AcuI CTGAAG 4 cut(s) 164, 741, 1734, 1764
AfaI GTAC 5 cut(s) 885, 1041, 1119, 1267, 1738
AfiI CCNNNNNNNGG 4 cut(s) 1526, 1712, 1718, 1799
AflIII ACRYGT 1 cut(s) 1926
AgsI TTSAA 8 cut(s) 188, 247, 263, 291, 816, 1057, 1444, 1764
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 3 cut(s) 1159, 1285, 1711
AjuI GAANNNNNNNTTGG 2 cut(s) 1513, 1545
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 2 cut(s) 469, 513
AlwI GGATC 1 cut(s) 539
AlwNI CAGNNNCTG 1 cut(s) 1733
AoxI GGCC 4 cut(s) 3, 252, 1305, 1865
ApeKI GCWGC 4 cut(s) 728, 1280, 1340, 1775
ApoI RAATTY 4 cut(s) 198, 274, 649, 1759
AspS9I GGNCC 2 cut(s) 253, 1866
AsuC2I CCSGG 1 cut(s) 1199
AsuHPI GGTGA 5 cut(s) 111, 377, 617, 927, 1104
AsuNHI GCTAGC 1 cut(s) 1856
BaeGI GKGCMC 1 cut(s) 1092
BalI TGGCCA 2 cut(s) 5, 1307
BanI GGYRCC 2 cut(s) 1201, 1249
BanII GRGCYC 1 cut(s) 1806
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 4 cut(s) 715, 1292, 1327, 1787
BccI CCATC 6 cut(s) 172, 581, 1157, 1588, 1612, 1636
BciT130I CCWGG 3 cut(s) 1161, 1287, 1713
BcnI CCSGG 1 cut(s) 1199
BcoDI GTCTC 2 cut(s) 469, 513
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 6 cut(s) 360, 435, 1476, 1818, 1857, 1908
BfmI CTRYAG 1 cut(s) 1278
BfuAI ACCTGC 2 cut(s) 451, 531
BglII AGATCT 1 cut(s) 861
BisI GCNGC 5 cut(s) 729, 1281, 1341, 1776, 1865
BlsI GCNGC 5 cut(s) 730, 1282, 1342, 1777, 1866
BmcAI AGTACT 2 cut(s) 885, 1267
Bme1390I CCNGG 4 cut(s) 1161, 1199, 1287, 1713
BmgT120I GGNCC 2 cut(s) 253, 1866
BmiI GGNNCC 3 cut(s) 1203, 1251, 1786
BmrFI CCNGG 4 cut(s) 1161, 1199, 1287, 1713
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 4 cut(s) 357, 1328, 1601, 1625
BmtI GCTAGC 1 cut(s) 1860
BmuI ACTGGG 1 cut(s) 705
BoxI GACNNNNGTC 1 cut(s) 1232
BpmI CTGGAG 5 cut(s) 1230, 1269, 1367, 1596, 1665
BpuEI CTTGAG 2 cut(s) 874, 890
BpuMI CCSGG 1 cut(s) 1199
BsaI GGTCTC 2 cut(s) 469, 513
BsaJI CCNNGG 5 cut(s) 678, 1159, 1160, 1712, 1899
Bsc4I CCNNNNNNNGG 4 cut(s) 1526, 1712, 1718, 1799
Bse1I ACTGG 6 cut(s) 226, 711, 1115, 1169, 1466, 1531
BseBI CCWGG 3 cut(s) 1161, 1287, 1713
BseDI CCNNGG 5 cut(s) 678, 1159, 1160, 1712, 1899
BseGI GGATG 2 cut(s) 1628, 1844
BseLI CCNNNNNNNGG 4 cut(s) 1526, 1712, 1718, 1799
BseMII CTCAG 3 cut(s) 182, 309, 438
BseNI ACTGG 6 cut(s) 226, 711, 1115, 1169, 1466, 1531
BseRI GAGGAG 4 cut(s) 1506, 1575, 1599, 1668
BseSI GKGCMC 1 cut(s) 1092
BseXI GCAGC 4 cut(s) 715, 1292, 1327, 1787
BseYI CCCAGC 1 cut(s) 1771
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 4 cut(s) 5, 254, 1307, 1867
BshNI GGYRCC 2 cut(s) 1201, 1249
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 2 cut(s) 1199, 1589
BslFI GGGAC 3 cut(s) 659, 1007, 1142
BslI CCNNNNNNNGG 4 cut(s) 1526, 1712, 1718, 1799
BsmAI GTCTC 2 cut(s) 469, 513
BsmFI GGGAC 3 cut(s) 659, 1007, 1142
BsmI GAATGC 2 cut(s) 731, 1439
BsnI GGCC 4 cut(s) 5, 254, 1307, 1867
Bso31I GGTCTC 2 cut(s) 469, 513
Bsp1286I GDGCHC 3 cut(s) 506, 1092, 1806
Bsp143I GATC 6 cut(s) 190, 235, 339, 531, 627, 861
Bsp19I CCATGG 1 cut(s) 678
BspACI CCGC 3 cut(s) 99, 1106, 1864
BspANI GGCC 4 cut(s) 5, 254, 1307, 1867
BspCNI CTCAG 3 cut(s) 181, 308, 437
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 1203, 1251, 1786
BspMAI CTGCAG 1 cut(s) 1282
BspMI ACCTGC 2 cut(s) 451, 531
BspOI GCTAGC 1 cut(s) 1860
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 2 cut(s) 1201, 1249
BspTNI GGTCTC 2 cut(s) 469, 513
BsrI ACTGG 6 cut(s) 226, 711, 1115, 1169, 1466, 1531
BssECI CCNNGG 5 cut(s) 678, 1159, 1160, 1712, 1899
BssMI GATC 6 cut(s) 190, 235, 339, 531, 627, 861
BssT1I CCWWGG 2 cut(s) 678, 1899
Bst2UI CCWGG 3 cut(s) 1161, 1287, 1713
Bst4CI ACNGT 6 cut(s) 691, 1021, 1039, 1087, 1156, 1373
Bst6I CTCTTC 3 cut(s) 32, 511, 660
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstC8I GCNNGC 4 cut(s) 640, 1665, 1858, 1862
BstDEI CTNAG 3 cut(s) 168, 295, 424
BstDSI CCRYGG 1 cut(s) 678
BstF5I GGATG 2 cut(s) 1628, 1844
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 6 cut(s) 193, 238, 342, 534, 630, 864
BstMAI GTCTC 2 cut(s) 469, 513
BstMBI GATC 6 cut(s) 190, 235, 339, 531, 627, 861
BstMWI GCNNNNNNNGC 7 cut(s) 11, 644, 734, 1256, 1280, 1337, 1436
BstNI CCWGG 3 cut(s) 1161, 1287, 1713
BstNSI RCATGY 1 cut(s) 1930
BstPAI GACNNNNGTC 1 cut(s) 1232
BstSCI CCNGG 4 cut(s) 1159, 1197, 1285, 1711
BstSFI CTRYAG 1 cut(s) 1278
BstSLI GKGCMC 1 cut(s) 1092
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 715, 1292, 1327, 1787
BstX2I RGATCY 2 cut(s) 531, 861
BstXI CCANNNNNNTGG 1 cut(s) 1391
BstYI RGATCY 2 cut(s) 531, 861
BsuRI GGCC 4 cut(s) 5, 254, 1307, 1867
BtgI CCRYGG 1 cut(s) 678
BtsCI GGATG 2 cut(s) 1628, 1844
BtsI GCAGTG 1 cut(s) 1658
BtsIMutI CAGTG 6 cut(s) 219, 666, 718, 1017, 1524, 1658
BveI ACCTGC 2 cut(s) 451, 531
Cac8I GCNNGC 4 cut(s) 640, 1665, 1858, 1862
CaiI CAGNNNCTG 1 cut(s) 1733
Cfr13I GGNCC 2 cut(s) 253, 1866
CseI GACGC 1 cut(s) 166
Csp6I GTAC 5 cut(s) 884, 1040, 1118, 1266, 1737
CviAII CATG 9 cut(s) 92, 394, 512, 679, 920, 1427, 1533, 1789, 1927
CviQI GTAC 5 cut(s) 884, 1040, 1118, 1266, 1737
DdeI CTNAG 3 cut(s) 168, 295, 424
DpnI GATC 6 cut(s) 192, 237, 341, 533, 629, 863
DpnII GATC 6 cut(s) 190, 235, 339, 531, 627, 861
DraI TTTAAA 1 cut(s) 1758
EaeI YGGCCR 2 cut(s) 3, 1305
Eam1104I CTCTTC 3 cut(s) 32, 511, 660
EarI CTCTTC 3 cut(s) 32, 511, 660
Eco130I CCWWGG 2 cut(s) 678, 1899
Eco24I GRGCYC 1 cut(s) 1806
Eco31I GGTCTC 2 cut(s) 469, 513
Eco57I CTGAAG 4 cut(s) 164, 741, 1734, 1764
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 3 cut(s) 1159, 1285, 1711
EcoT14I CCWWGG 2 cut(s) 678, 1899
EcoT22I ATGCAT 1 cut(s) 1441
EcoT38I GRGCYC 1 cut(s) 1806
ErhI CCWWGG 2 cut(s) 678, 1899
FaeI CATG 9 cut(s) 95, 397, 515, 682, 923, 1430, 1536, 1792, 1930
FaqI GGGAC 3 cut(s) 659, 1007, 1142
FatI CATG 9 cut(s) 91, 393, 511, 678, 919, 1426, 1532, 1788, 1926
FauNDI CATATG 1 cut(s) 1435
FblI GTMKAC 1 cut(s) 1368
Fnu4HI GCNGC 5 cut(s) 729, 1281, 1341, 1776, 1865
FokI GGATG 2 cut(s) 1615, 1831
FriOI GRGCYC 1 cut(s) 1806
Fsp4HI GCNGC 5 cut(s) 729, 1281, 1341, 1776, 1865
FspBI CTAG 6 cut(s) 360, 435, 1476, 1818, 1857, 1908
GluI GCNGC 5 cut(s) 729, 1281, 1341, 1776, 1865
GsaI CCCAGC 1 cut(s) 1775
GsuI CTGGAG 5 cut(s) 1230, 1269, 1367, 1596, 1665
HaeIII GGCC 4 cut(s) 5, 254, 1307, 1867
HapII CCGG 2 cut(s) 1199, 1589
HgaI GACGC 1 cut(s) 166
Hin1II CATG 9 cut(s) 95, 397, 515, 682, 923, 1430, 1536, 1792, 1930
HindIII AAGCTT 1 cut(s) 753
HpaII CCGG 2 cut(s) 1199, 1589
HphI GGTGA 5 cut(s) 111, 377, 617, 927, 1104
Hpy166II GTNNAC 3 cut(s) 440, 1369, 1376
Hpy188I TCNGA 4 cut(s) 144, 171, 1324, 1458
Hpy188III TCNNGA 7 cut(s) 66, 694, 891, 907, 1225, 1237, 1782
Hpy8I GTNNAC 3 cut(s) 440, 1369, 1376
Hpy99I CGWCG 3 cut(s) 1555, 1558, 1561
HpyAV CCTTC 3 cut(s) 879, 1712, 1758
HpyCH4III ACNGT 6 cut(s) 691, 1021, 1039, 1087, 1156, 1373
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 644, 734, 1256, 1280, 1337, 1436
HpyF3I CTNAG 3 cut(s) 168, 295, 424
Hsp92II CATG 9 cut(s) 95, 397, 515, 682, 923, 1430, 1536, 1792, 1930
Kzo9I GATC 6 cut(s) 190, 235, 339, 531, 627, 861
LmnI GCTCC 5 cut(s) 1054, 1279, 1288, 1316, 1386
Lsp1109I GCAGC 4 cut(s) 715, 1292, 1327, 1787
LweI GCATC 4 cut(s) 357, 1328, 1601, 1625
MaeI CTAG 6 cut(s) 360, 435, 1476, 1818, 1857, 1908
MalI GATC 6 cut(s) 192, 237, 341, 533, 629, 863
MboI GATC 6 cut(s) 190, 235, 339, 531, 627, 861
MflI RGATCY 2 cut(s) 531, 861
MhlI GDGCHC 3 cut(s) 506, 1092, 1806
MlsI TGGCCA 2 cut(s) 5, 1307
MluCI AATT 6 cut(s) 198, 274, 456, 593, 649, 1759
MluNI TGGCCA 2 cut(s) 5, 1307
MlyI GAGTC 3 cut(s) 706, 926, 1221
MmeI TCCRAC 3 cut(s) 240, 1433, 1676
Mox20I TGGCCA 2 cut(s) 5, 1307
Mph1103I ATGCAT 1 cut(s) 1441
MscI TGGCCA 2 cut(s) 5, 1307
MseI TTAA 5 cut(s) 203, 459, 1757, 1824, 1923
Msp20I TGGCCA 2 cut(s) 5, 1307
MspA1I CMGCKG 1 cut(s) 1208
MspI CCGG 2 cut(s) 1199, 1589
MspR9I CCNGG 4 cut(s) 1161, 1199, 1287, 1713
Mva1269I GAATGC 2 cut(s) 731, 1439
MvaI CCWGG 3 cut(s) 1161, 1287, 1713
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 7 cut(s) 11, 644, 734, 1256, 1280, 1337, 1436
NciI CCSGG 1 cut(s) 1199
NcoI CCATGG 1 cut(s) 678
NdeI CATATG 1 cut(s) 1435
NdeII GATC 6 cut(s) 190, 235, 339, 531, 627, 861
NheI GCTAGC 1 cut(s) 1856
NlaIII CATG 9 cut(s) 95, 397, 515, 682, 923, 1430, 1536, 1792, 1930
NlaIV GGNNCC 3 cut(s) 1203, 1251, 1786
NmeAIII GCCGAG 1 cut(s) 905
NmuCI GTSAC 7 cut(s) 365, 536, 1015, 1186, 1222, 1234, 1481
NsiI ATGCAT 1 cut(s) 1441
NspI RCATGY 1 cut(s) 1930
PasI CCCWGGG 1 cut(s) 1160
PciI ACATGT 1 cut(s) 1926
PcsI WCGNNNNNNNCGW 1 cut(s) 1556
PctI GAATGC 2 cut(s) 731, 1439
PfeI GAWTC 7 cut(s) 172, 894, 1057, 1109, 1165, 1240, 1462
PflMI CCANNNNNTGG 2 cut(s) 1526, 1799
PfoI TCCNGGA 1 cut(s) 1285
PkrI GCNGC 5 cut(s) 730, 1282, 1342, 1777, 1866
PleI GAGTC 3 cut(s) 705, 926, 1220
PpsI GAGTC 3 cut(s) 705, 926, 1220
PscI ACATGT 1 cut(s) 1926
PshAI GACNNNNGTC 1 cut(s) 1232
PsiI TTATAA 1 cut(s) 779
Psp6I CCWGG 3 cut(s) 1159, 1285, 1711
PspFI CCCAGC 1 cut(s) 1771
PspGI CCWGG 3 cut(s) 1159, 1285, 1711
PspN4I GGNNCC 3 cut(s) 1203, 1251, 1786
PspPI GGNCC 2 cut(s) 253, 1866
PstI CTGCAG 1 cut(s) 1282
PstNI CAGNNNCTG 1 cut(s) 1733
PsuI RGATCY 2 cut(s) 531, 861
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 5 cut(s) 885, 1041, 1119, 1267, 1738
RsaNI GTAC 5 cut(s) 884, 1040, 1118, 1266, 1737
SaqAI TTAA 5 cut(s) 203, 459, 1757, 1824, 1923
SatI GCNGC 5 cut(s) 729, 1281, 1341, 1776, 1865
Sau3AI GATC 6 cut(s) 190, 235, 339, 531, 627, 861
Sau96I GGNCC 2 cut(s) 253, 1866
ScaI AGTACT 2 cut(s) 885, 1267
SchI GAGTC 3 cut(s) 706, 926, 1221
ScrFI CCNGG 4 cut(s) 1161, 1199, 1287, 1713
SduI GDGCHC 3 cut(s) 506, 1092, 1806
SfaNI GCATC 4 cut(s) 357, 1328, 1601, 1625
SfcI CTRYAG 1 cut(s) 1278
SmlI CTYRAG 2 cut(s) 889, 905
SmoI CTYRAG 2 cut(s) 889, 905
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 6 cut(s) 198, 274, 456, 593, 649, 1759
SsiI CCGC 3 cut(s) 99, 1106, 1864
SspI AATATT 1 cut(s) 583
SspMI CTAG 6 cut(s) 360, 435, 1476, 1818, 1857, 1908
StyD4I CCNGG 4 cut(s) 1159, 1197, 1285, 1711
StyI CCWWGG 2 cut(s) 678, 1899
TaaI ACNGT 6 cut(s) 691, 1021, 1039, 1087, 1156, 1373
TaqI TCGA 4 cut(s) 404, 623, 630, 1806
TasI AATT 6 cut(s) 198, 274, 456, 593, 649, 1759
TatI WGTACW 2 cut(s) 883, 1265
TauI GCSGC 1 cut(s) 1867
TfiI GAWTC 7 cut(s) 172, 894, 1057, 1109, 1165, 1240, 1462
Tru1I TTAA 5 cut(s) 203, 459, 1757, 1824, 1923
Tru9I TTAA 5 cut(s) 203, 459, 1757, 1824, 1923
TscAI CASTG 6 cut(s) 226, 673, 718, 1024, 1531, 1665
TseFI GTSAC 7 cut(s) 365, 536, 1015, 1186, 1222, 1234, 1481
TseI GCWGC 4 cut(s) 728, 1280, 1340, 1775
Tsp45I GTSAC 7 cut(s) 365, 536, 1015, 1186, 1222, 1234, 1481
TspDTI ATGAA 5 cut(s) 51, 105, 857, 936, 1521
TspRI CASTG 6 cut(s) 226, 673, 718, 1024, 1531, 1665
Van91I CCANNNNNTGG 2 cut(s) 1526, 1799
XapI RAATTY 4 cut(s) 198, 274, 649, 1759
XceI RCATGY 1 cut(s) 1930
XcmI CCANNNNNNNNNTGG 1 cut(s) 1293
XmiI GTMKAC 1 cut(s) 1368
XspI CTAG 6 cut(s) 360, 435, 1476, 1818, 1857, 1908
ZrmI AGTACT 2 cut(s) 885, 1267
Zsp2I ATGCAT 1 cut(s) 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.