Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003974.1

Orthogroup ID

OG0009330

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4238

Gene Structure 4238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

gtcagacttctgaaagagattgcgatgcagtattcaatccattgcttcatcttagatgcatcctctatagatgatgctataaatgaggtcatactagcttggtgtgacattggaggcagtattttgttcctagcctctgacaacaagaaagacatctttcctaaactaagcatccgtggttggctggttgctgttatgaatgttgaaggcagcagtgcatgtgagagttcaagcatggtttacatcaacaaactgcaggagttgcctttgactatttgccacttaaataagaaggcaactggaaacagtgttgtgacagttggttatattatgaagccttctcgtgaagaagattttgctaagaggggcgcattccctatgtgtccaactcaaaatgggctgattttcatgcccctcacatttgaactccctctatcacctcaattacaagaagttgatgtacttctccacaaagcaactgatgaaattatgtccattgatttgaatagctctttactttcctctaataagataacatacagcaggggcatgcaggaattgcaaagatatatggaacatcaccaggacctctgtgtgattgacccacttaactctatttatcctgtattggatcgattgaaaattcaacagattctacttgcattggaggatctcaaaactggaagtttctgtgcaattagggggccccattatctcaaggttgatgattttaaccagactggtttaactcagatgctatctgaagctaaattagctcttccaagtatagtaaaacctcaaattgcttgtggtgtagccgatgctcatagtatggcaattgtctttagagttgaagattttaaggatttgactgttcctcttccagcaattatacaggaatatgtggatcattcctcgacgctatacaaattttatgttttgggcgagaaagtttaccatgcagttaagaactctacaccaaatgcagataccttgatgaaaatatctggaagtaatgagccaaaacctttgctctttgacagtctaaagtccttgcccactagcaaacagaatccaaattctgtagatgataacagctcaaagtccactgagcactgccttgatcttgatttggttactactgcagctgatttccttatgagaaagcttgaactcaccgtctttggctttgatgttgtaattcaggaaggtactggtgaccatgtcattgtagatgtaaattaccttccatcattcaaggaagtacccaatgaagttgccatccctgcgttttgggatgctattaagaagaaatttgaagtggaaggaagaaataagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0047325 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 map00562

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

446

Amino Acids

49.74

Weight (kDa)

5.29

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin	PF05770	236 - 424	5.6e-26	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43980
fragaria_vesca	FvH4_1g00201
malus_domestica	MD00G1087100.v1.1 MD15G1143000.v1.1
prunus_persica	Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1 Prupe.7G270000_v2.0.a1
pyrus_communis	pycom15g12910
rosa_chinensis	RchiOBHm_Chr2g0084491
rosa_laevigata	RLG00000015622
rosa_multiflora	Rmu_sc0003974.1_g000001 Rmu_sc0009647.1_g000006
rosa_roxburghii	Rroxscaffold_2G00156020
rosa_rugosa	Rorug01G0454400 Rorug01G0454500
rosa_samantha	Rh2AG002500 Rh2BG002100 Rh2CG002600 Rh2DG002600
rosa_wichuraiana	Rw2G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	639, 678, 915
AcsI	RAATTY	4 cut(s)	642, 929, 1078, 1313
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	3 cut(s)	462, 1213, 1266
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	7 cut(s)	98, 510, 767, 776, 1098, 1148, 1168
AluI	AGCT	7 cut(s)	98, 510, 767, 776, 1098, 1148, 1168
Alw21I	GWGCWC	1 cut(s)	1116
AlwI	GGATC	3 cut(s)	639, 678, 915
AoxI	GGCC	1 cut(s)	704
ApaI	GGGCCC	1 cut(s)	708
ApeKI	GCWGC	2 cut(s)	210, 1145
ApoI	RAATTY	4 cut(s)	642, 929, 1078, 1313
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	586, 704, 705
AsuHPI	GGTGA	4 cut(s)	429, 572, 1168, 1229
AvaII	GGWCC	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	708
BarI	GAAGNNNNNNTAC	4 cut(s)	444, 476, 1230, 1262
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	1116
BbvI	GCAGC	2 cut(s)	222, 1157
BccI	CCATC	2 cut(s)	1258, 1289
BciT130I	CCWGG	1 cut(s)	584
BfaI	CTAG	3 cut(s)	95, 131, 1062
BfmI	CTRYAG	4 cut(s)	66, 254, 1083, 1143
BisI	GCNGC	2 cut(s)	211, 1146
BlsI	GCNGC	2 cut(s)	212, 1147
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	3 cut(s)	586, 704, 705
BmiI	GGNNCC	3 cut(s)	705, 706, 707
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	8 cut(s)	15, 46, 64, 68, 180, 744, 811, 1288
BpuEI	CTTGAG	1 cut(s)	701
Bsa29I	ATCGAT	1 cut(s)	634
BsaJI	CCNNGG	1 cut(s)	175
Bse1I	ACTGG	4 cut(s)	304, 685, 745, 1219
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	584
BseCI	ATCGAT	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	4 cut(s)	59, 171, 1281, 1303
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	764, 1101
BseNI	ACTGG	4 cut(s)	304, 685, 745, 1219
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	2 cut(s)	222, 1157
BshFI	GGCC	1 cut(s)	706
BshVI	ATCGAT	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	1116
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	706
Bsp120I	GGGCCC	1 cut(s)	704
Bsp1286I	GDGCHC	2 cut(s)	708, 1116
Bsp143I	GATC	4 cut(s)	631, 670, 907, 1123
BspANI	GGCC	1 cut(s)	706
BspCNI	CTCAG	2 cut(s)	763, 1102
BspDI	ATCGAT	1 cut(s)	634
BspLI	GGNNCC	3 cut(s)	705, 706, 707
BspMAI	CTGCAG	2 cut(s)	258, 1147
BspPI	GGATC	3 cut(s)	639, 678, 915
BspQI	GCTCTTC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	4 cut(s)	304, 685, 745, 1219
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	4 cut(s)	631, 670, 907, 1123
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	5 cut(s)	308, 319, 874, 1043, 1180
Bst6I	CTCTTC	2 cut(s)	783, 885
BstAPI	GCANNNNNTGC	2 cut(s)	262, 559
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	5 cut(s)	52, 167, 360, 750, 1110
BstDSI	CCRYGG	1 cut(s)	175
BstEII	GGTNACC	1 cut(s)	1217
BstF5I	GGATG	4 cut(s)	59, 171, 1281, 1303
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	4 cut(s)	634, 673, 910, 1126
BstMBI	GATC	4 cut(s)	631, 670, 907, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 559, 773, 1286
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	2 cut(s)	222, 553
BstPI	GGTNACC	1 cut(s)	1217
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	4 cut(s)	66, 254, 1083, 1143
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	222, 1157
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
Bsu15I	ATCGAT	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	706
BsuTUI	ATCGAT	1 cut(s)	634
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	4 cut(s)	59, 171, 1281, 1303
BtsI	GCAGTG	2 cut(s)	220, 1114
BtsIMutI	CAGTG	4 cut(s)	220, 313, 1107, 1114
Cac8I	GCNNGC	1 cut(s)	551
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	3 cut(s)	586, 704, 705
ClaI	ATCGAT	1 cut(s)	634
CseI	GACGC	1 cut(s)	928
Csp6I	GTAC	3 cut(s)	461, 1212, 1265
CviAII	CATG	6 cut(s)	219, 235, 409, 550, 959, 1223
CviQI	GTAC	3 cut(s)	461, 1212, 1265
DdeI	CTNAG	5 cut(s)	52, 167, 360, 750, 1110
DpnI	GATC	4 cut(s)	633, 672, 909, 1125
DpnII	GATC	4 cut(s)	631, 670, 907, 1123
Eam1104I	CTCTTC	2 cut(s)	783, 885
EarI	CTCTTC	2 cut(s)	783, 885
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	783
Eco91I	GGTNACC	1 cut(s)	1217
EcoO109I	RGGNCCY	3 cut(s)	586, 704, 705
EcoO65I	GGTNACC	1 cut(s)	1217
EcoRII	CCWGG	1 cut(s)	582
EcoT22I	ATGCAT	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	708
FaeI	CATG	6 cut(s)	222, 238, 412, 553, 962, 1226
FatI	CATG	6 cut(s)	218, 234, 408, 549, 958, 1222
Fnu4HI	GCNGC	2 cut(s)	211, 1146
FokI	GGATG	4 cut(s)	46, 158, 1268, 1310
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	2 cut(s)	211, 1146
FspBI	CTAG	3 cut(s)	95, 131, 1062
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	2 cut(s)	211, 1146
HaeIII	GGCC	1 cut(s)	706
HgaI	GACGC	1 cut(s)	928
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	6 cut(s)	222, 238, 412, 553, 962, 1226
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	1166
HinfI	GANTC	2 cut(s)	652, 1072
HphI	GGTGA	4 cut(s)	429, 572, 1168, 1229
Hpy166II	GTNNAC	3 cut(s)	241, 955, 1107
Hpy188I	TCNGA	5 cut(s)	5, 12, 139, 753, 763
Hpy188III	TCNNGA	4 cut(s)	344, 1008, 1127, 1205
Hpy8I	GTNNAC	3 cut(s)	241, 955, 1107
Hpy99I	CGWCG	1 cut(s)	922
HpyAV	CCTTC	6 cut(s)	200, 286, 348, 1202, 1256, 1319
HpyCH4III	ACNGT	5 cut(s)	308, 319, 874, 1043, 1180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 559, 773, 1286
HpyF3I	CTNAG	5 cut(s)	52, 167, 360, 750, 1110
Hsp92II	CATG	6 cut(s)	222, 238, 412, 553, 962, 1226
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	631, 670, 907, 1123
LguI	GCTCTTC	1 cut(s)	783
Lsp1109I	GCAGC	2 cut(s)	222, 1157
LweI	GCATC	8 cut(s)	15, 46, 64, 68, 180, 744, 811, 1288
MaeI	CTAG	3 cut(s)	95, 131, 1062
MaeIII	GTNAC	4 cut(s)	104, 313, 1135, 1217
MalI	GATC	4 cut(s)	633, 672, 909, 1125
MboI	GATC	4 cut(s)	631, 670, 907, 1123
MboII	GAAGA	7 cut(s)	359, 362, 770, 866, 872, 1321, 1341
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	708, 1116
MmeI	TCCRAC	1 cut(s)	410
Mph1103I	ATGCAT	1 cut(s)	61
MseI	TTAA	7 cut(s)	284, 609, 732, 746, 861, 966, 1305
MspA1I	CMGCKG	1 cut(s)	1148
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	4 cut(s)	262, 559, 773, 1286
NdeII	GATC	4 cut(s)	631, 670, 907, 1123
NlaIII	CATG	6 cut(s)	222, 238, 412, 553, 962, 1226
NlaIV	GGNNCC	3 cut(s)	705, 706, 707
NmuCI	GTSAC	3 cut(s)	104, 313, 1217
NsiI	ATGCAT	1 cut(s)	61
NspI	RCATGY	2 cut(s)	222, 553
PaeI	GCATGC	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	783
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	652, 1072
PflFI	GACNNNGTC	1 cut(s)	1223
PkrI	GCNGC	2 cut(s)	212, 1147
PpuMI	RGGWCCY	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	582
PspEI	GGTNACC	1 cut(s)	1217
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	705, 706, 707
PspOMI	GGGCCC	1 cut(s)	704
PspPI	GGNCC	3 cut(s)	586, 704, 705
PspPPI	RGGWCCY	1 cut(s)	586
PstI	CTGCAG	2 cut(s)	258, 1147
PsuI	RGATCY	1 cut(s)	670
PsyI	GACNNNGTC	1 cut(s)	1223
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	3 cut(s)	462, 1213, 1266
RsaNI	GTAC	3 cut(s)	461, 1212, 1265
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	7 cut(s)	284, 609, 732, 746, 861, 966, 1305
SatI	GCNGC	2 cut(s)	211, 1146
Sau3AI	GATC	4 cut(s)	631, 670, 907, 1123
Sau96I	GGNCC	3 cut(s)	586, 704, 705
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	2 cut(s)	708, 1116
SfaNI	GCATC	8 cut(s)	15, 46, 64, 68, 180, 744, 811, 1288
SfcI	CTRYAG	4 cut(s)	66, 254, 1083, 1143
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SphI	GCATGC	1 cut(s)	553
SspMI	CTAG	3 cut(s)	95, 131, 1062
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	5 cut(s)	308, 319, 874, 1043, 1180
TaqI	TCGA	2 cut(s)	634, 917
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	2 cut(s)	652, 1072
Tru1I	TTAA	7 cut(s)	284, 609, 732, 746, 861, 966, 1305
Tru9I	TTAA	7 cut(s)	284, 609, 732, 746, 861, 966, 1305
TscAI	CASTG	4 cut(s)	220, 313, 1114, 1121
TseFI	GTSAC	3 cut(s)	104, 313, 1217
TseI	GCWGC	2 cut(s)	210, 1145
Tsp45I	GTSAC	3 cut(s)	104, 313, 1217
TspDTI	ATGAA	7 cut(s)	37, 212, 347, 397, 498, 1013, 1287
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	4 cut(s)	220, 313, 1114, 1121
Tth111I	GACNNNGTC	1 cut(s)	1223
VpaK11BI	GGWCC	1 cut(s)	586
XapI	RAATTY	4 cut(s)	642, 929, 1078, 1313
XceI	RCATGY	2 cut(s)	222, 553
XspI	CTAG	3 cut(s)	95, 131, 1062
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.