Rmu_sc0004001.1_g000005

VAMP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004001.1
OG0019512
Physical Location & Seq
Forward (+)
14758 .. 16357
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004001.1_g000005.1.cds

Sequence Viewer

Length: 1035 bp
atgaacttgcagccatcatgcactgtgaaagtcgagcagagcccttcccaattctcttcttcagtccgaagtgcagcaaggaccctagcatcaattcttgaattctgggacgagaatcaacatcgggaacaagttcagaagtttcagaatggctgccgtgaacaattgagatgcgatttcgagagggttaatggaactaggtcggtcttggatggtagagatttcgccttccattgcttccaagctaagtttgattcaattatgatggaagtaatggcgtcggatttggattatttgcccacttcgcctccggcaagtctgggtaaagggaagagattggttctagatttgaaaaacttgttcttcaatgcagaggtgcttggcgcaaatctcgctgaaccagatggtgcggacgcggataatcaagaacccttccctgatgccccccaagcacctgaagcaggagatgaagtgaatcctgagccgatactagaggcggcgcctgtcgcggagcctcttgaggctcctgttgctgttgccctaaatcagccgcctgcgcctccttccaaactggaaaggctggctcgcatactcgaagtgactcctcctagagttatagatgatgctagagaaggcctccgtcgtcacctgggacctgatattctgacgccagttgcgcccgccagagttttggagtatctgagggtacttctccgcgagggagccattactgaagcccagcagacccaagcccactatttgaccctcactcaacagacggacacttcgcgcgatttcttaggtgaccggggtactcttatcatggatttgatgcttacgaagaaccatcttaggacccagatccaagatcttcaggcccaattaactgttgtcacggccaggctcgcccacaaggaagcccaactggagcaacccttgccgctttcgaggcgctatctcaagaactggcctaggctcgtttggaagccgctactgatgccagctttcgcctggatgaacatttcctccgcctga

Protein Analysis

344

Amino Acids

38.47

Weight (kDa)

5.3

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019512)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004001.1_g000005
rosa_samantha Rh2AG182100 Rh2AG315800 Rh2BG323600 Rh2CG186600 Rh2CG305800 Rh2DG188500 Rh2DG342100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 499
AccII CGCG 5 cut(s) 416, 509, 717, 790, 792
AclWI GGATC 1 cut(s) 856
AcoI YGGCCR 1 cut(s) 897
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 4 cut(s) 45, 477, 753, 857
AcyI GRCGYC 3 cut(s) 278, 500, 668
AfaI GTAC 2 cut(s) 708, 814
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 4 cut(s) 101, 258, 352, 367
AjnI CCWGG 3 cut(s) 648, 899, 1010
AloI GAACNNNNNNTCC 1 cut(s) 1010
AluBI AGCT 2 cut(s) 245, 1004
AluI AGCT 2 cut(s) 245, 1004
AlwI GGATC 1 cut(s) 856
AoxI GGCC 4 cut(s) 634, 876, 897, 968
ApeKI GCWGC 3 cut(s) 10, 74, 153
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 769, 801
Asp700I GAANNNNTTC 1 cut(s) 132
AspA2I CCTAGG 1 cut(s) 971
AspLEI GCGC 6 cut(s) 386, 502, 559, 679, 792, 954
AspS9I GGNCC 4 cut(s) 81, 653, 855, 877
AsuC2I CCSGG 1 cut(s) 809
AsuHPI GGTGA 2 cut(s) 638, 815
AvaII GGWCC 3 cut(s) 81, 653, 855
AvrII CCTAGG 1 cut(s) 971
BanI GGYRCC 1 cut(s) 499
BanII GRGCYC 1 cut(s) 44
BbvI GCAGC 3 cut(s) 22, 86, 140
BccI CCATC 5 cut(s) 22, 206, 259, 398, 855
BceAI ACGGC 2 cut(s) 141, 912
BciT130I CCWGG 3 cut(s) 650, 901, 1012
BcnI CCSGG 1 cut(s) 809
BfaI CTAG 7 cut(s) 86, 198, 344, 491, 609, 627, 972
BfoI RGCGCY 2 cut(s) 503, 955
BglII AGATCT 1 cut(s) 868
BisI GCNGC 7 cut(s) 11, 75, 154, 498, 551, 941, 989
BlnI CCTAGG 1 cut(s) 971
BlsI GCNGC 7 cut(s) 12, 76, 155, 499, 552, 942, 990
Bme1390I CCNGG 4 cut(s) 650, 809, 901, 1012
Bme18I GGWCC 3 cut(s) 81, 653, 855
BmgT120I GGNCC 4 cut(s) 81, 653, 855, 877
BmiI GGNNCC 7 cut(s) 83, 501, 513, 525, 654, 724, 857
BmrFI CCNGG 4 cut(s) 650, 809, 901, 1012
BmsI GCATC 6 cut(s) 98, 161, 430, 613, 822, 987
BplI GAGNNNNNCTC 2 cut(s) 621, 653
BpmI CTGGAG 1 cut(s) 947
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 539, 944
BpuMI CCSGG 1 cut(s) 809
BsaHI GRCGYC 3 cut(s) 278, 500, 668
BsaJI CCNNGG 3 cut(s) 649, 808, 971
BsaXI ACNNNNNCTCC 5 cut(s) 292, 322, 456, 486, 1010
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse1I ACTGG 4 cut(s) 576, 671, 930, 971
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 3 cut(s) 650, 901, 1012
BseDI CCNNGG 3 cut(s) 649, 808, 971
BseGI GGATG 2 cut(s) 217, 1020
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 471, 692
BseNI ACTGG 4 cut(s) 576, 671, 930, 971
BseRI GAGGAG 1 cut(s) 594
BseXI GCAGC 3 cut(s) 22, 86, 140
BseYI CCCAGC 1 cut(s) 738
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 5 cut(s) 416, 509, 717, 790, 792
BshFI GGCC 4 cut(s) 636, 878, 899, 970
BshNI GGYRCC 1 cut(s) 499
BsiSI CCGG 2 cut(s) 311, 808
BslFI GGGAC 2 cut(s) 122, 666
BslI CCNNNNNNNGG 1 cut(s) 461
BsmFI GGGAC 2 cut(s) 122, 666
BsnI GGCC 4 cut(s) 636, 878, 899, 970
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 861, 868
BspANI GGCC 4 cut(s) 636, 878, 899, 970
BspCNI CTCAG 2 cut(s) 472, 693
BspFNI CGCG 5 cut(s) 416, 509, 717, 790, 792
BspLI GGNNCC 7 cut(s) 83, 501, 513, 525, 654, 724, 857
BspPI GGATC 1 cut(s) 856
BspT107I GGYRCC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 4 cut(s) 576, 671, 930, 971
BssECI CCNNGG 3 cut(s) 649, 808, 971
BssMI GATC 2 cut(s) 861, 868
BssNI GRCGYC 3 cut(s) 278, 500, 668
BssT1I CCWWGG 1 cut(s) 971
Bst2UI CCWGG 3 cut(s) 650, 901, 1012
Bst4CI ACNGT 2 cut(s) 25, 889
Bst6I CTCTTC 2 cut(s) 61, 326
BstACI GRCGYC 3 cut(s) 278, 500, 668
BstAPI GCANNNNNTGC 1 cut(s) 937
BstC8I GCNNGC 6 cut(s) 555, 582, 586, 681, 906, 1002
BstDEI CTNAG 5 cut(s) 246, 480, 701, 799, 851
BstEII GGTNACC 1 cut(s) 803
BstENI CCTNNNNNAGG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 217, 1020
BstFNI CGCG 5 cut(s) 416, 509, 717, 790, 792
BstH2I RGCGCY 2 cut(s) 503, 955
BstHHI GCGC 6 cut(s) 386, 502, 559, 679, 792, 954
BstKTI GATC 2 cut(s) 864, 871
BstMBI GATC 2 cut(s) 861, 868
BstNI CCWGG 3 cut(s) 650, 901, 1012
BstPI GGTNACC 1 cut(s) 803
BstSCI CCNGG 4 cut(s) 648, 807, 899, 1010
BstUI CGCG 5 cut(s) 416, 509, 717, 790, 792
BstV1I GCAGC 3 cut(s) 22, 86, 140
BstX2I RGATCY 2 cut(s) 861, 868
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 861, 868
BsuRI GGCC 4 cut(s) 636, 878, 899, 970
BtsCI GGATG 2 cut(s) 217, 1020
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 6 cut(s) 555, 582, 586, 681, 906, 1002
CfoI GCGC 6 cut(s) 386, 502, 559, 679, 792, 954
Cfr13I GGNCC 4 cut(s) 81, 653, 855, 877
CseI GACGC 3 cut(s) 267, 422, 676
Csp6I GTAC 2 cut(s) 707, 813
CviAII CATG 2 cut(s) 18, 823
CviQI GTAC 2 cut(s) 707, 813
DdeI CTNAG 5 cut(s) 246, 480, 701, 799, 851
DinI GGCGCC 1 cut(s) 501
DpnI GATC 2 cut(s) 863, 870
DpnII GATC 2 cut(s) 861, 868
EaeI YGGCCR 1 cut(s) 897
Eam1104I CTCTTC 2 cut(s) 61, 326
EarI CTCTTC 2 cut(s) 61, 326
EciI GGCGGA 1 cut(s) 1018
Eco130I CCWWGG 1 cut(s) 971
Eco147I AGGCCT 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 3 cut(s) 81, 653, 855
Eco57I CTGAAG 4 cut(s) 45, 477, 753, 857
Eco91I GGTNACC 1 cut(s) 803
EcoNI CCTNNNNNAGG 1 cut(s) 459
EcoO109I RGGNCCY 3 cut(s) 81, 653, 855
EcoO65I GGTNACC 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 3 cut(s) 648, 899, 1010
EcoT14I CCWWGG 1 cut(s) 971
EcoT38I GRGCYC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 971
FaeI CATG 2 cut(s) 21, 826
FaiI YATR 5 cut(s) 19, 263, 590, 617, 824
FaqI GGGAC 2 cut(s) 122, 666
FatI CATG 2 cut(s) 17, 822
FauI CCCGC 1 cut(s) 688
Fnu4HI GCNGC 7 cut(s) 11, 75, 154, 498, 551, 941, 989
FokI GGATG 2 cut(s) 224, 1027
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 7 cut(s) 11, 75, 154, 498, 551, 941, 989
FspBI CTAG 7 cut(s) 86, 198, 344, 491, 609, 627, 972
GlaI GCGC 6 cut(s) 385, 501, 558, 678, 791, 953
GluI GCNGC 7 cut(s) 11, 75, 154, 498, 551, 941, 989
GsaI CCCAGC 1 cut(s) 742
GsuI CTGGAG 1 cut(s) 947
HaeII RGCGCY 2 cut(s) 503, 955
HaeIII GGCC 4 cut(s) 636, 878, 899, 970
HapII CCGG 2 cut(s) 311, 808
HgaI GACGC 3 cut(s) 267, 422, 676
HhaI GCGC 6 cut(s) 386, 502, 559, 679, 792, 954
Hin1I GRCGYC 3 cut(s) 278, 500, 668
Hin1II CATG 2 cut(s) 21, 826
Hin6I GCGC 6 cut(s) 384, 500, 557, 677, 790, 952
HinP1I GCGC 6 cut(s) 384, 500, 557, 677, 790, 952
HinfI GANTC 4 cut(s) 115, 254, 475, 601
HpaII CCGG 2 cut(s) 311, 808
HphI GGTGA 2 cut(s) 638, 815
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 6 cut(s) 68, 138, 147, 283, 666, 702
Hpy188III TCNNGA 8 cut(s) 98, 125, 181, 344, 425, 479, 518, 961
Hpy8I GTNNAC 1 cut(s) 161
Hpy99I CGWCG 2 cut(s) 283, 645
HpyAV CCTTC 5 cut(s) 54, 238, 442, 573, 626
HpyCH4III ACNGT 2 cut(s) 25, 889
HpyCH4V TGCA 4 cut(s) 10, 21, 74, 371
HpyF3I CTNAG 5 cut(s) 246, 480, 701, 799, 851
Hsp92I GRCGYC 3 cut(s) 278, 500, 668
Hsp92II CATG 2 cut(s) 21, 826
HspAI GCGC 6 cut(s) 384, 500, 557, 677, 790, 952
KasI GGCGCC 1 cut(s) 499
Kzo9I GATC 2 cut(s) 861, 868
LmnI GCTCC 4 cut(s) 511, 529, 722, 928
Lsp1109I GCAGC 3 cut(s) 22, 86, 140
LweI GCATC 6 cut(s) 98, 161, 430, 613, 822, 987
MaeI CTAG 7 cut(s) 86, 198, 344, 491, 609, 627, 972
MaeIII GTNAC 4 cut(s) 598, 644, 803, 892
MalI GATC 2 cut(s) 863, 870
MboI GATC 2 cut(s) 861, 868
MboII GAAGA 6 cut(s) 48, 51, 343, 355, 853, 863
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 2 cut(s) 861, 868
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 6 cut(s) 50, 93, 101, 164, 258, 881
Mly113I GGCGCC 1 cut(s) 500
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 189, 884
MspI CCGG 2 cut(s) 311, 808
MspR9I CCNGG 4 cut(s) 650, 809, 901, 1012
MunI CAATTG 1 cut(s) 164
MvaI CCWGG 3 cut(s) 650, 901, 1012
MvnI CGCG 5 cut(s) 416, 509, 717, 790, 792
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 1 cut(s) 809
NdeII GATC 2 cut(s) 861, 868
NlaIII CATG 2 cut(s) 21, 826
NlaIV GGNNCC 7 cut(s) 83, 501, 513, 525, 654, 724, 857
NmuCI GTSAC 4 cut(s) 598, 644, 803, 892
PceI AGGCCT 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 115, 254, 475
PkrI GCNGC 7 cut(s) 12, 76, 155, 499, 552, 942, 990
PleI GAGTC 1 cut(s) 595
PluTI GGCGCC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 595
PpuMI RGGWCCY 3 cut(s) 81, 653, 855
Psp5II RGGWCCY 3 cut(s) 81, 653, 855
Psp6I CCWGG 3 cut(s) 648, 899, 1010
PspEI GGTNACC 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 738
PspGI CCWGG 3 cut(s) 648, 899, 1010
PspN4I GGNNCC 7 cut(s) 83, 501, 513, 525, 654, 724, 857
PspPI GGNCC 4 cut(s) 81, 653, 855, 877
PspPPI RGGWCCY 3 cut(s) 81, 653, 855
PsuI RGATCY 2 cut(s) 861, 868
RsaI GTAC 2 cut(s) 708, 814
RsaNI GTAC 2 cut(s) 707, 813
SaqAI TTAA 2 cut(s) 189, 884
SatI GCNGC 7 cut(s) 11, 75, 154, 498, 551, 941, 989
Sau3AI GATC 2 cut(s) 861, 868
Sau96I GGNCC 4 cut(s) 81, 653, 855, 877
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 4 cut(s) 650, 809, 901, 1012
SduI GDGCHC 1 cut(s) 44
SetI ASST 8 cut(s) 203, 247, 378, 457, 651, 658, 805, 1006
SfaNI GCATC 6 cut(s) 98, 161, 430, 613, 822, 987
SfoI GGCGCC 1 cut(s) 501
SinI GGWCC 3 cut(s) 81, 653, 855
SmlI CTYRAG 2 cut(s) 518, 959
SmoI CTYRAG 2 cut(s) 518, 959
Sse9I AATT 6 cut(s) 50, 93, 101, 164, 258, 881
SseBI AGGCCT 1 cut(s) 636
SspDI GGCGCC 1 cut(s) 499
SspMI CTAG 7 cut(s) 86, 198, 344, 491, 609, 627, 972
StuI AGGCCT 1 cut(s) 636
StyD4I CCNGG 4 cut(s) 648, 807, 899, 1010
StyI CCWWGG 1 cut(s) 971
TaaI ACNGT 2 cut(s) 25, 889
TaqI TCGA 4 cut(s) 33, 180, 594, 947
TaqII GACCGA 1 cut(s) 193
TasI AATT 6 cut(s) 50, 93, 101, 164, 258, 881
TauI GCSGC 4 cut(s) 500, 553, 943, 991
TfiI GAWTC 3 cut(s) 115, 254, 475
Tru1I TTAA 2 cut(s) 189, 884
Tru9I TTAA 2 cut(s) 189, 884
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 4 cut(s) 598, 644, 803, 892
TseI GCWGC 3 cut(s) 10, 74, 153
Tsp45I GTSAC 4 cut(s) 598, 644, 803, 892
TspDTI ATGAA 3 cut(s) 17, 483, 1031
TspGWI ACGGA 2 cut(s) 629, 794
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 3 cut(s) 81, 653, 855
XagI CCTNNNNNAGG 1 cut(s) 459
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 1008
XmaJI CCTAGG 1 cut(s) 971
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 7 cut(s) 86, 198, 344, 491, 609, 627, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.