VAMP-like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004001.1_g000005 |
| rosa_samantha | Rh2AG182100 Rh2AG315800 Rh2BG323600 Rh2CG186600 Rh2CG305800 Rh2DG188500 Rh2DG342100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 296 |
| Acc36I | ACCTGC | 1 cut(s) | 296 |
| AccI | GTMKAC | 1 cut(s) | 84 |
| AciI | CCGC | 2 cut(s) | 242, 351 |
| AcsI | RAATTY | 1 cut(s) | 288 |
| AcuI | CTGAAG | 1 cut(s) | 283 |
| AgsI | TTSAA | 3 cut(s) | 13, 192, 286 |
| AjnI | CCWGG | 1 cut(s) | 57 |
| AluBI | AGCT | 2 cut(s) | 179, 329 |
| AluI | AGCT | 2 cut(s) | 179, 329 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ApoI | RAATTY | 1 cut(s) | 288 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| BbsI | GAAGAC | 1 cut(s) | 68 |
| BccI | CCATC | 2 cut(s) | 62, 140 |
| BciT130I | CCWGG | 1 cut(s) | 59 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BfmI | CTRYAG | 1 cut(s) | 25 |
| BfuAI | ACCTGC | 1 cut(s) | 296 |
| BisI | GCNGC | 2 cut(s) | 6, 242 |
| BlsI | GCNGC | 2 cut(s) | 7, 243 |
| Bme1390I | CCNGG | 1 cut(s) | 59 |
| BmrFI | CCNGG | 1 cut(s) | 59 |
| BmrI | ACTGGG | 1 cut(s) | 141 |
| BmsI | GCATC | 1 cut(s) | 95 |
| BmuI | ACTGGG | 1 cut(s) | 141 |
| BpiI | GAAGAC | 1 cut(s) | 68 |
| BsaI | GGTCTC | 1 cut(s) | 305 |
| Bse1I | ACTGG | 1 cut(s) | 136 |
| Bse3DI | GCAATG | 1 cut(s) | 166 |
| BseBI | CCWGG | 1 cut(s) | 59 |
| BseGI | GGATG | 2 cut(s) | 54, 151 |
| BseMI | GCAATG | 1 cut(s) | 166 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseNI | ACTGG | 1 cut(s) | 136 |
| BsgI | GTGCAG | 1 cut(s) | 324 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| Bso31I | GGTCTC | 1 cut(s) | 305 |
| Bsp143I | GATC | 1 cut(s) | 88 |
| BspACI | CCGC | 2 cut(s) | 242, 351 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspMI | ACCTGC | 1 cut(s) | 296 |
| BspTNI | GGTCTC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 1 cut(s) | 166 |
| BsrI | ACTGG | 1 cut(s) | 136 |
| BssMI | GATC | 1 cut(s) | 88 |
| Bst2UI | CCWGG | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 4 cut(s) | 17, 29, 45, 316 |
| Bst6I | CTCTTC | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 1 cut(s) | 246 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstF5I | GGATG | 2 cut(s) | 54, 151 |
| BstKTI | GATC | 1 cut(s) | 91 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 1 cut(s) | 88 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 238 |
| BstNI | CCWGG | 1 cut(s) | 59 |
| BstSCI | CCNGG | 1 cut(s) | 57 |
| BstSFI | CTRYAG | 1 cut(s) | 25 |
| BstV2I | GAAGAC | 1 cut(s) | 68 |
| BtsCI | GGATG | 2 cut(s) | 54, 151 |
| BtsIMutI | CAGTG | 1 cut(s) | 307 |
| BveI | ACCTGC | 1 cut(s) | 296 |
| Cac8I | GCNNGC | 1 cut(s) | 246 |
| CviAII | CATG | 1 cut(s) | 70 |
| CviJI | RGCY | 3 cut(s) | 5, 179, 329 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 179, 329 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 1 cut(s) | 90 |
| DpnII | GATC | 1 cut(s) | 88 |
| Eam1104I | CTCTTC | 1 cut(s) | 260 |
| EarI | CTCTTC | 1 cut(s) | 260 |
| Eco31I | GGTCTC | 1 cut(s) | 305 |
| Eco57I | CTGAAG | 1 cut(s) | 283 |
| EcoRII | CCWGG | 1 cut(s) | 57 |
| FaeI | CATG | 1 cut(s) | 73 |
| FaiI | YATR | 2 cut(s) | 71, 197 |
| FatI | CATG | 1 cut(s) | 69 |
| FauI | CCCGC | 1 cut(s) | 344 |
| FblI | GTMKAC | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 242 |
| FokI | GGATG | 2 cut(s) | 41, 158 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 242 |
| GluI | GCNGC | 2 cut(s) | 6, 242 |
| Hin1II | CATG | 1 cut(s) | 73 |
| HincII | GTYRAC | 1 cut(s) | 85 |
| HindII | GTYRAC | 1 cut(s) | 85 |
| HinfI | GANTC | 1 cut(s) | 188 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 1 cut(s) | 85 |
| Hpy188III | TCNNGA | 4 cut(s) | 92, 115, 254, 278 |
| Hpy8I | GTNNAC | 1 cut(s) | 85 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 2 cut(s) | 172, 193 |
| HpyCH4III | ACNGT | 4 cut(s) | 17, 29, 45, 316 |
| HpyCH4V | TGCA | 2 cut(s) | 248, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 238 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| Hsp92II | CATG | 1 cut(s) | 73 |
| Kzo9I | GATC | 1 cut(s) | 88 |
| LpnPI | CCDG | 9 cut(s) | 24, 44, 71, 77, 117, 127, 258, 263, 291 |
| LweI | GCATC | 1 cut(s) | 95 |
| MalI | GATC | 1 cut(s) | 90 |
| MboI | GATC | 1 cut(s) | 88 |
| MboII | GAAGA | 3 cut(s) | 68, 277, 289 |
| MluCI | AATT | 2 cut(s) | 192, 288 |
| MmeI | TCCRAC | 1 cut(s) | 195 |
| MnlI | CCTC | 1 cut(s) | 111 |
| MspR9I | CCNGG | 1 cut(s) | 59 |
| MvaI | CCWGG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 238 |
| NdeII | GATC | 1 cut(s) | 88 |
| NlaIII | CATG | 1 cut(s) | 73 |
| PaqCI | CACCTGC | 1 cut(s) | 296 |
| PfeI | GAWTC | 1 cut(s) | 188 |
| PkrI | GCNGC | 2 cut(s) | 7, 243 |
| Psp6I | CCWGG | 1 cut(s) | 57 |
| PspGI | CCWGG | 1 cut(s) | 57 |
| SalI | GTCGAC | 1 cut(s) | 83 |
| SatI | GCNGC | 2 cut(s) | 6, 242 |
| Sau3AI | GATC | 1 cut(s) | 88 |
| ScrFI | CCNGG | 1 cut(s) | 59 |
| SetI | ASST | 3 cut(s) | 181, 310, 331 |
| SfaNI | GCATC | 1 cut(s) | 95 |
| SfcI | CTRYAG | 1 cut(s) | 25 |
| Sse9I | AATT | 2 cut(s) | 192, 288 |
| SsiI | CCGC | 2 cut(s) | 242, 351 |
| StyD4I | CCNGG | 1 cut(s) | 57 |
| TaaI | ACNGT | 4 cut(s) | 17, 29, 45, 316 |
| TaqI | TCGA | 2 cut(s) | 84, 114 |
| TaqII | GACCGA | 1 cut(s) | 127 |
| TasI | AATT | 2 cut(s) | 192, 288 |
| TauI | GCSGC | 1 cut(s) | 244 |
| TfiI | GAWTC | 1 cut(s) | 188 |
| TscAI | CASTG | 1 cut(s) | 307 |
| TseI | GCWGC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 1 cut(s) | 212 |
| TspRI | CASTG | 1 cut(s) | 307 |
| XapI | RAATTY | 1 cut(s) | 288 |
| XmiI | GTMKAC | 1 cut(s) | 84 |