Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019512

Physical Location & Seq

Genomic Coordinates Forward (+)

39170401 .. 39171583

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG323600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTGCCTTGAATAGTAATCTCCCCAGTATTGTCGCTGGACGGCGGAGAACCATCCCGGTCGCAGTCATGGATCTTCGGGTCGACAATCTGGATAGATTGAGATTCAATTTCGAGATGGATAATGGAACTGGGTCGGTCTGGGATGGTGGAAATTTCGCCTTCCATTGCTTCCAAGCTGAGTTTGATTCAATTATGAAGGAAGTAATGGCGTTGGATTTGGATTATTTGCCAACTTCGCTGCCTGCAAGTCGGGATAAAGGGAAGAGATTGGTTCTGGATTTGAAAATTTTGTTCTTCAGTGCAGGTGAGACCGTGAGAGAGAGAGCTTTGCCAAAAAAACAAAAAATGCAGGTGAGAGAGAGAGAGAGAGAGAGTGATAGGTGCCCGAGTAAGGGAGAGAGACAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

9.34

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019512)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004001.1_g000005
rosa_samantha	Rh2AG182100 Rh2AG315800 Rh2BG323600 Rh2CG186600 Rh2CG305800 Rh2DG188500 Rh2DG342100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	296, 343
Acc36I	ACCTGC	2 cut(s)	296, 343
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	154, 288
AcuI	CTGAAG	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	394, 395
AgsI	TTSAA	4 cut(s)	13, 109, 192, 286
AluBI	AGCT	2 cut(s)	179, 329
AluI	AGCT	2 cut(s)	179, 329
Alw26I	GTCTC	2 cut(s)	305, 397
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	5, 241
ApoI	RAATTY	2 cut(s)	154, 288
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	320, 367
AvaI	CYCGRG	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	3 cut(s)	62, 112, 140
BceAI	ACGGC	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	305, 397
BfuAI	ACCTGC	2 cut(s)	296, 343
BisI	GCNGC	2 cut(s)	6, 242
BlsI	GCNGC	2 cut(s)	7, 243
Bme1390I	CCNGG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	2 cut(s)	21, 141
BmuI	ACTGGG	2 cut(s)	21, 141
BpuMI	CCSGG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 395
Bse1I	ACTGG	2 cut(s)	27, 136
Bse3DI	GCAATG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	54, 151
BseLI	CCNNNNNNNGG	2 cut(s)	394, 395
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	27, 136
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	394, 395
BsmAI	GTCTC	2 cut(s)	305, 397
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	386
BspMI	ACCTGC	2 cut(s)	296, 343
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	27, 136
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	54, 151
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	305, 397
BstMBI	GATC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	54, 151
BtsIMutI	CAGTG	1 cut(s)	307
BveI	ACCTGC	2 cut(s)	296, 343
Cac8I	GCNNGC	1 cut(s)	246
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	3 cut(s)	5, 179, 329
CviKI_1	RGCY	3 cut(s)	5, 179, 329
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	388
FaeI	CATG	1 cut(s)	73
FaiI	YATR	2 cut(s)	71, 197
FatI	CATG	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	6, 242
FokI	GGATG	2 cut(s)	41, 158
Fsp4HI	GCNGC	2 cut(s)	6, 242
GluI	GCNGC	2 cut(s)	6, 242
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	105, 188
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	320, 367
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	4 cut(s)	92, 115, 254, 278
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	172, 193
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	248, 305, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	73
Lsp1109I	GCAGC	1 cut(s)	228
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	3 cut(s)	68, 277, 289
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	4 cut(s)	109, 154, 192, 288
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	1 cut(s)	402
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	238
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	386
PaqCI	CACCTGC	2 cut(s)	296, 343
PfeI	GAWTC	2 cut(s)	105, 188
PkrI	GCNGC	2 cut(s)	7, 243
PspN4I	GGNNCC	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	6, 242
Sau3AI	GATC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	6 cut(s)	181, 310, 331, 357, 386, 413
Sse9I	AATT	4 cut(s)	109, 154, 192, 288
SsiI	CCGC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	84, 114
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	4 cut(s)	109, 154, 192, 288
TfiI	GAWTC	2 cut(s)	105, 188
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	5, 241
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	2 cut(s)	154, 288
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.