Rh2AG182100

VAMP-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
17558596 .. 17558914
319 bp
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UTR
Exon/CDS
Intron
Rh2AG182100.1

Sequence Viewer

Length: 285 bp
ATGGCTGCCTTGAACAGTAATCTCCACAATATTGTCGCTGGACGGCGGAGAACCATCCCGGTCGCAGTCATGGGTCTTCGGGTCGAAGATCTGGATAGATTGAGATGCGATTTCGAGAGGGATAATGGAACTGGGTCAGTCTGGGATGGTGGAGATTTCGCCTTCCATTGCTTCCAAGCTGAGTTTGATTCAATTATGAAGGAAGTAATGGCGTTGGATTTGGATTATTTGCCCACTTCGCCGCCTGCAAGTCGGGATAAAGGGAAGAGATTGGTGAGACAGTGA

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

6.06

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 242
AgsI TTSAA 2 cut(s) 13, 192
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 68
BccI CCATC 2 cut(s) 62, 140
BceAI ACGGC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 271
BglII AGATCT 1 cut(s) 88
BisI GCNGC 2 cut(s) 6, 242
BlsI GCNGC 2 cut(s) 7, 243
Bme1390I CCNGG 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 166
BseGI GGATG 2 cut(s) 54, 151
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 2 cut(s) 46, 242
BspCNI CTCAG 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 17, 282
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 54, 151
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 2 cut(s) 54, 151
Cac8I GCNNGC 1 cut(s) 246
CviAII CATG 1 cut(s) 70
CviJI RGCY 2 cut(s) 5, 179
CviKI_1 RGCY 2 cut(s) 5, 179
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 61
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 71, 197
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 6, 242
FokI GGATG 2 cut(s) 41, 158
Fsp4HI GCNGC 2 cut(s) 6, 242
GluI GCNGC 2 cut(s) 6, 242
HapII CCGG 1 cut(s) 59
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 59
Hpy188III TCNNGA 3 cut(s) 92, 115, 254
HpyAV CCTTC 2 cut(s) 172, 193
HpyCH4III ACNGT 2 cut(s) 17, 282
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 24, 72, 77, 117, 127, 258
LweI GCATC 1 cut(s) 95
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 68, 98, 277
MflI RGATCY 1 cut(s) 88
MluCI AATT 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 1 cut(s) 111
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 73
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 7, 243
PsuI RGATCY 1 cut(s) 88
SatI GCNGC 2 cut(s) 6, 242
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 59
SetI ASST 1 cut(s) 181
SfaNI GCATC 1 cut(s) 95
Sse9I AATT 1 cut(s) 192
SsiI CCGC 2 cut(s) 46, 242
SspI AATATT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 17, 282
TaqI TCGA 2 cut(s) 84, 114
TasI AATT 1 cut(s) 192
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 188
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.