Rh2AG315800

VAMP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019512
Physical Location & Seq
Forward (+)
41159880 .. 41161031
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG315800.1

Sequence Viewer

Length: 387 bp
ATGGCTGCCTTGAACAGTAATCTCCACAGTATTGTCGCTGGACGGTGGAGAACCATCCCGGTCGCAGTCATGGGTCTTCGGGTCGACGATCTGGATAGATTGAGATGCGATTTCGAGAGGGATAATGGAACTGGGTCGGTCTGGGATGGTGGAGATTTCGCTTTCCATTGCTTCCAAGCTGAGTTTGATTCAATTATGAAGGAAGTAATGGCGTTGGATTTGGATTATTTGCCCACTTCGCCGCCTGCAAGTCGGGATGAAGGGAAGAGATTGGTTCTGGATTTGAAAATTTTGTTCTTCAGTGCAGGTGAGACCGTGAGAGAGAGAACTTTGCCAAAAAAACAAAAAATGCAGGTGAGAGAGAGAGAGCGATGGGTGCCCGAGTAA

Protein Analysis

128

Amino Acids

14.68

Weight (kDa)

5.74

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019512)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004001.1_g000005
rosa_samantha Rh2AG182100 Rh2AG315800 Rh2BG323600 Rh2CG186600 Rh2CG305800 Rh2DG188500 Rh2DG342100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 296, 343
Acc36I ACCTGC 2 cut(s) 296, 343
AccB1I GGYRCC 1 cut(s) 376
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 283
AgsI TTSAA 3 cut(s) 13, 192, 286
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 320, 367
AvaI CYCGRG 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 381
BanI GGYRCC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 68
BccI CCATC 3 cut(s) 62, 140, 366
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 305
BfuAI ACCTGC 2 cut(s) 296, 343
BisI GCNGC 2 cut(s) 6, 242
BlsI GCNGC 2 cut(s) 7, 243
Bme1390I CCNGG 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 166
BseGI GGATG 3 cut(s) 54, 151, 262
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 378
BspMI ACCTGC 2 cut(s) 296, 343
BspT107I GGYRCC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 4 cut(s) 17, 29, 45, 316
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 54, 151, 262
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 238, 376
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 68
BtsCI GGATG 3 cut(s) 54, 151, 262
BtsIMutI CAGTG 1 cut(s) 307
BveI ACCTGC 2 cut(s) 296, 343
Cac8I GCNNGC 1 cut(s) 246
CviAII CATG 1 cut(s) 70
CviJI RGCY 2 cut(s) 5, 179
CviKI_1 RGCY 2 cut(s) 5, 179
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 380
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 71, 197
FatI CATG 1 cut(s) 69
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 6, 242
FokI GGATG 3 cut(s) 41, 158, 269
Fsp4HI GCNGC 2 cut(s) 6, 242
GluI GCNGC 2 cut(s) 6, 242
HapII CCGG 1 cut(s) 59
Hin1II CATG 1 cut(s) 73
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 59
HphI GGTGA 2 cut(s) 320, 367
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 4 cut(s) 92, 115, 254, 278
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 193, 254
HpyCH4III ACNGT 4 cut(s) 17, 29, 45, 316
HpyCH4V TGCA 3 cut(s) 248, 305, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 376
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 9 cut(s) 24, 72, 77, 117, 127, 258, 263, 291, 338
LweI GCATC 1 cut(s) 95
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 68, 277, 289
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 2 cut(s) 192, 288
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 1 cut(s) 111
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 238, 376
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 378
PaqCI CACCTGC 2 cut(s) 296, 343
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 7, 243
PspN4I GGNNCC 1 cut(s) 378
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 2 cut(s) 6, 242
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 381
SetI ASST 3 cut(s) 181, 310, 357
SfaNI GCATC 1 cut(s) 95
Sse9I AATT 2 cut(s) 192, 288
SsiI CCGC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 17, 29, 45, 316
TaqI TCGA 2 cut(s) 84, 114
TaqII GACCGA 1 cut(s) 127
TasI AATT 2 cut(s) 192, 288
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 212, 273
TspRI CASTG 1 cut(s) 307
XapI RAATTY 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.