Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004080.1

Orthogroup ID

OG0011472

Physical Location & Seq

Genomic Coordinates Forward (+)

53155 .. 57714

Gene Structure 4560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004080.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

atgggagcgcttagtttgagcagcgtggattttaatttgagtgtgaaatacccagaaattccaagattccaatggagcaagagaaacaagaattcatgcttgttgtgcggaggaagcatgaagaggctgagatggagatgttatacttcttctaacgacgatgagggaaagactagtagtagcaacaagtcaaaagacgaggctgccgaagatacacgcagcaacgaccctgcttccctcccttccacttccaggccaccacctacatcaccacttggaaccgcttacaataatttccaactcgactcctttaagctgatggaactccttggacctgagaaggtcgatcctgctgatgtaaagctcattaaggacaagctttttggctattctactttttgggtcactaaagaggagccatttggagaccttggggagggcattcttttccttggtaatttgaggggaaagagagaggacgtatttgccaaattccagactctgctagctgaggttacaggtaataagtacaacctttttatggtggaggaacccaattctgaagatctagatccgcgtggtgggcctcgtgttagctttggtctgctccggaaagaggtctcagaaccaggcccaacaacactttggcaatacgtaattgcgctcttgttgtttcttctaacaattggatcatctgtagagttaggaattgcatctcagataaatagacttccaccagaggttgtcaagtattttacagatccaaatgctattgacccaccagaaatggagctgctattcccgtttgtggagtcagctttgcccctagcctatggtgttcttggggttttgctatttcatgaagttgggcatcttctggctgcttttccaaagaaagtaaaacttagcattccttacttcattcctaatattacacttggcagctttggcgcaatcactcagtttaaatccattcttcccgatcggagcacaaaagtcgacatttcacttgcaggcccgtttgctggttttgcactgtcattgtcaatgtttgctgtaggtctgctgctctcatctaatcccaatgccacagaagagctggtgcaggttccaagcatgctgtttcaaggttctttgcttctaggactcatcagtagagctactcttggttatgcatcaatgcatgctgcgactgttgcaattcatcctcttatgattgctggctggtgtgggttgacaactacagcttttaatatgcttccagtgggctgtcttgatggtggaagagctgtgcagactccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggactccggcgaacggtgaccggattccggcgaccggtgaccggattccggcgaccggtgaccggattcaggaaaccggtaaccgaaatccggcgacagatgactggaatccggaatccggctattattgccccccagtaatcatattactgccccccaatacaaagtccaatgtttctactgcctcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009651 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009723 GO:0009725 GO:0009959 GO:0009987 GO:0010027 GO:0010033 GO:0010207 GO:0015979 GO:0016043 GO:0016787 GO:0019538 GO:0019684 GO:0022607 GO:0034622 GO:0042221 GO:0043157 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0050896 GO:0060359 GO:0061024 GO:0065003 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50

Protein Analysis

683

Amino Acids

72.87

Weight (kDa)

5.59

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35220
fragaria_vesca	FvH4_1g28520 FvH4_1g28520
malus_domestica	MD12G1009600.v1.1 MD14G1007000.v1.1
prunus_persica	Prupe.7G011600_v2.0.a1 Prupe.7G011600_v2.0.a1
pyrus_communis	pycom12g00740 pycom14g00550
rosa_chinensis	RchiOBHm_Chr3g0496231
rosa_laevigata	RLG00000022545
rosa_multiflora	Rmu_sc0004080.1_g000013 Rmu_ssc0000454.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389320
rosa_rugosa	Rorug03G0280800 Rorug03G0280900
rosa_samantha	Rh3BG364000 Rh3CG360900 Rh3DG363900
rosa_wichuraiana	Rw3G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1096
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	1 cut(s)	577
AccIII	TCCGGA	2 cut(s)	609, 1972
AciI	CCGC	3 cut(s)	108, 282, 575
AclWI	GGATC	4 cut(s)	341, 566, 697, 755
AcsI	RAATTY	3 cut(s)	57, 91, 491
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	1 cut(s)	530
AfeI	AGCGCT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	1127
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	251, 628
Alw21I	GWGCWC	1 cut(s)	992
Alw26I	GTCTC	2 cut(s)	420, 625
AlwI	GGATC	4 cut(s)	341, 566, 697, 755
AlwNI	CAGNNNCTG	1 cut(s)	502
Aor13HI	TCCGGA	2 cut(s)	609, 1972
Aor51HI	AGCGCT	1 cut(s)	9
AoxI	GGCC	4 cut(s)	254, 584, 631, 1015
ApeKI	GCWGC	8 cut(s)	21, 203, 219, 793, 881, 942, 1066, 1187
ApoI	RAATTY	3 cut(s)	57, 91, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	3 cut(s)	10, 664, 953
AspS9I	GGNCC	4 cut(s)	332, 584, 632, 1016
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	992
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
BccI	CCATC	3 cut(s)	126, 313, 1271
BcgI	CGANNNNNNTGC	2 cut(s)	979, 1013
BciT130I	CCWGG	2 cut(s)	253, 630
BcoDI	GTCTC	2 cut(s)	420, 625
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	5 cut(s)	174, 506, 569, 827, 1142
BfmI	CTRYAG	3 cut(s)	696, 1056, 1242
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	1096
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
BlsI	GCNGC	8 cut(s)	23, 205, 221, 795, 883, 944, 1068, 1189
Bme1390I	CCNGG	2 cut(s)	253, 630
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	4 cut(s)	332, 584, 632, 1016
BmiI	GGNNCC	4 cut(s)	280, 417, 552, 1110
BmrFI	CCNGG	2 cut(s)	253, 630
BmrI	ACTGGG	1 cut(s)	1991
BmsI	GCATC	3 cut(s)	722, 880, 1184
BmtI	GCTAGC	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	1991
Bpu10I	CCTNAGC	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	2 cut(s)	420, 625
BsaJI	CCNNGG	3 cut(s)	328, 430, 451
Bse1I	ACTGG	3 cut(s)	1262, 1970, 1997
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	2 cut(s)	609, 1972
BseBI	CCWGG	2 cut(s)	253, 630
BseDI	CCNNGG	3 cut(s)	328, 430, 451
BseGI	GGATG	1 cut(s)	1204
BseJI	GATNNNNATC	1 cut(s)	570
BseMII	CTCAG	6 cut(s)	119, 327, 501, 636, 731, 974
BseNI	ACTGG	3 cut(s)	1262, 1970, 1997
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
BsgI	GTGCAG	2 cut(s)	1124, 1313
Bsh1236I	CGCG	1 cut(s)	577
BshFI	GGCC	4 cut(s)	256, 586, 633, 1017
BsiHKAI	GWGCWC	1 cut(s)	992
BsmAI	GTCTC	2 cut(s)	420, 625
BsmI	GAATGC	2 cut(s)	441, 909
BsnI	GGCC	4 cut(s)	256, 586, 633, 1017
Bso31I	GGTCTC	2 cut(s)	420, 625
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp13I	TCCGGA	2 cut(s)	609, 1972
Bsp143I	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
BspACI	CCGC	3 cut(s)	108, 282, 575
BspANI	GGCC	4 cut(s)	256, 586, 633, 1017
BspCNI	CTCAG	6 cut(s)	120, 328, 502, 635, 730, 973
BspEI	TCCGGA	2 cut(s)	609, 1972
BspFNI	CGCG	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	4 cut(s)	280, 417, 552, 1110
BspMI	ACCTGC	1 cut(s)	1096
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	4 cut(s)	341, 566, 697, 755
BspQI	GCTCTTC	2 cut(s)	1089, 1279
BspTNI	GGTCTC	2 cut(s)	420, 625
BsrI	ACTGG	3 cut(s)	1262, 1970, 1997
BssECI	CCNNGG	3 cut(s)	328, 430, 451
BssMI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	3 cut(s)	328, 430, 451
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	253, 630
Bst6I	CTCTTC	3 cut(s)	116, 1089, 1279
BstBAI	YACGTR	1 cut(s)	655
BstC8I	GCNNGC	5 cut(s)	507, 1015, 1118, 1185, 1222
BstDEI	CTNAG	8 cut(s)	11, 128, 336, 510, 622, 717, 905, 960
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	1204
BstFNI	CGCG	1 cut(s)	577
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 664, 953
BstKTI	GATC	6 cut(s)	349, 568, 574, 692, 763, 985
BstMAI	GTCTC	2 cut(s)	420, 625
BstMBI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
BstMWI	GCNNNNNNNGC	7 cut(s)	105, 114, 583, 948, 1031, 1196, 1989
BstNI	CCWGG	2 cut(s)	253, 630
BstNSI	RCATGY	2 cut(s)	1120, 1187
BstSCI	CCNGG	2 cut(s)	251, 628
BstSFI	CTRYAG	3 cut(s)	696, 1056, 1242
BstSNI	TACGTA	1 cut(s)	655
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
BstX2I	RGATCY	3 cut(s)	565, 571, 760
BstYI	RGATCY	3 cut(s)	565, 571, 760
BsuRI	GGCC	4 cut(s)	256, 586, 633, 1017
BtsCI	GGATG	1 cut(s)	1204
BtsIMutI	CAGTG	2 cut(s)	1034, 1269
BveI	ACCTGC	1 cut(s)	1096
Cac8I	GCNNGC	5 cut(s)	507, 1015, 1118, 1185, 1222
CaiI	CAGNNNCTG	1 cut(s)	502
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	3 cut(s)	10, 664, 953
Cfr13I	GGNCC	4 cut(s)	332, 584, 632, 1016
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	5 cut(s)	96, 118, 860, 1117, 1184
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	8 cut(s)	11, 128, 336, 510, 622, 717, 905, 960
DpnI	GATC	6 cut(s)	348, 567, 573, 691, 762, 984
DpnII	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
DraI	TTTAAA	1 cut(s)	967
Eam1104I	CTCTTC	3 cut(s)	116, 1089, 1279
EarI	CTCTTC	3 cut(s)	116, 1089, 1279
Eco105I	TACGTA	1 cut(s)	655
Eco130I	CCWWGG	3 cut(s)	328, 430, 451
Eco31I	GGTCTC	2 cut(s)	420, 625
Eco47I	GGWCC	1 cut(s)	332
Eco47III	AGCGCT	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	251, 628
EcoT14I	CCWWGG	3 cut(s)	328, 430, 451
EcoT22I	ATGCAT	2 cut(s)	1177, 1185
ErhI	CCWWGG	3 cut(s)	328, 430, 451
FaeI	CATG	5 cut(s)	99, 121, 863, 1120, 1187
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FatI	CATG	5 cut(s)	95, 117, 859, 1116, 1183
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
FokI	GGATG	1 cut(s)	1191
Fsp4HI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
FspBI	CTAG	5 cut(s)	174, 506, 569, 827, 1142
GlaI	GCGC	3 cut(s)	9, 663, 952
GluI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	256, 586, 633, 1017
HhaI	GCGC	3 cut(s)	10, 664, 953
Hin1II	CATG	5 cut(s)	99, 121, 863, 1120, 1187
Hin6I	GCGC	3 cut(s)	8, 662, 951
HinP1I	GCGC	3 cut(s)	8, 662, 951
HincII	GTYRAC	2 cut(s)	1000, 1236
HindII	GTYRAC	2 cut(s)	1000, 1236
HindIII	AAGCTT	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	1000, 1236
Hpy188I	TCNGA	4 cut(s)	562, 625, 720, 987
Hpy188III	TCNNGA	8 cut(s)	496, 569, 610, 860, 980, 1274, 1931, 1973
Hpy8I	GTNNAC	2 cut(s)	1000, 1236
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	252, 334
HpyCH4IV	ACGT	2 cut(s)	480, 654
HpyCH4V	TGCA	8 cut(s)	713, 1013, 1034, 1105, 1175, 1183, 1199, 1294
HpyF10VI	GCNNNNNNNGC	7 cut(s)	105, 114, 583, 948, 1031, 1196, 1989
HpyF3I	CTNAG	8 cut(s)	11, 128, 336, 510, 622, 717, 905, 960
HpySE526I	ACGT	2 cut(s)	480, 654
Hsp92II	CATG	5 cut(s)	99, 121, 863, 1120, 1187
HspAI	GCGC	3 cut(s)	8, 662, 951
Kpn2I	TCCGGA	2 cut(s)	609, 1972
Kzo9I	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
LguI	GCTCTTC	2 cut(s)	1089, 1279
LmnI	GCTCC	6 cut(s)	5, 75, 415, 612, 790, 987
Lsp1109I	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
LweI	GCATC	3 cut(s)	722, 880, 1184
MaeI	CTAG	5 cut(s)	174, 506, 569, 827, 1142
MaeII	ACGT	2 cut(s)	480, 654
MalI	GATC	6 cut(s)	348, 567, 573, 691, 762, 984
MboI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
MboII	GAAGA	9 cut(s)	133, 141, 221, 575, 668, 866, 968, 1106, 1296
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	3 cut(s)	565, 571, 760
MhlI	GDGCHC	1 cut(s)	992
MmeI	TCCRAC	1 cut(s)	322
Mph1103I	ATGCAT	2 cut(s)	1177, 1185
MroI	TCCGGA	2 cut(s)	609, 1972
MseI	TTAA	5 cut(s)	33, 312, 369, 966, 1251
MspR9I	CCNGG	2 cut(s)	253, 630
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	2 cut(s)	441, 909
MvaI	CCWGG	2 cut(s)	253, 630
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	7 cut(s)	105, 114, 583, 948, 1031, 1196, 1989
NdeII	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	5 cut(s)	99, 121, 863, 1120, 1187
NlaIV	GGNNCC	4 cut(s)	280, 417, 552, 1110
NsiI	ATGCAT	2 cut(s)	1177, 1185
NspI	RCATGY	2 cut(s)	1120, 1187
PaeI	GCATGC	2 cut(s)	1120, 1187
PagI	TCATGA	1 cut(s)	859
PciSI	GCTCTTC	2 cut(s)	1089, 1279
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	2 cut(s)	441, 909
PkrI	GCNGC	8 cut(s)	23, 205, 221, 795, 883, 944, 1068, 1189
Ple19I	CGATCG	1 cut(s)	985
Ppu21I	YACGTR	1 cut(s)	655
Psp6I	CCWGG	2 cut(s)	251, 628
PspGI	CCWGG	2 cut(s)	251, 628
PspN4I	GGNNCC	4 cut(s)	280, 417, 552, 1110
PspPI	GGNCC	4 cut(s)	332, 584, 632, 1016
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	3 cut(s)	565, 571, 760
PvuI	CGATCG	1 cut(s)	985
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SalI	GTCGAC	1 cut(s)	998
SapI	GCTCTTC	2 cut(s)	1089, 1279
SaqAI	TTAA	5 cut(s)	33, 312, 369, 966, 1251
SatI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
Sau3AI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
Sau96I	GGNCC	4 cut(s)	332, 584, 632, 1016
ScrFI	CCNGG	2 cut(s)	253, 630
SduI	GDGCHC	1 cut(s)	992
SfaNI	GCATC	3 cut(s)	722, 880, 1184
SfcI	CTRYAG	3 cut(s)	696, 1056, 1242
SinI	GGWCC	1 cut(s)	332
SnaBI	TACGTA	1 cut(s)	655
SpeI	ACTAGT	1 cut(s)	173
SphI	GCATGC	2 cut(s)	1120, 1187
SsiI	CCGC	3 cut(s)	108, 282, 575
SspI	AATATT	1 cut(s)	931
SspMI	CTAG	5 cut(s)	174, 506, 569, 827, 1142
StyD4I	CCNGG	2 cut(s)	251, 628
StyI	CCWWGG	3 cut(s)	328, 430, 451
TaiI	ACGT	2 cut(s)	483, 657
TaqI	TCGA	3 cut(s)	303, 345, 999
TatI	WGTACW	1 cut(s)	528
Tru1I	TTAA	5 cut(s)	33, 312, 369, 966, 1251
Tru9I	TTAA	5 cut(s)	33, 312, 369, 966, 1251
TscAI	CASTG	2 cut(s)	1041, 1269
TseI	GCWGC	8 cut(s)	21, 203, 219, 793, 881, 942, 1066, 1187
TspDTI	ATGAA	6 cut(s)	84, 134, 848, 876, 910, 1193
TspRI	CASTG	2 cut(s)	1041, 1269
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	3 cut(s)	57, 91, 491
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	2 cut(s)	1120, 1187
XcmI	CCANNNNNNNNNTGG	3 cut(s)	69, 642, 1096
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	5 cut(s)	174, 506, 569, 827, 1142
Zsp2I	ATGCAT	2 cut(s)	1177, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.