Rorug03G0280900

zinc metalloprotease EGY1, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
27908580 .. 27910473
1894 bp
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UTR
Exon/CDS
Intron
Rorug03G0280900.1

Sequence Viewer

Length: 342 bp
ATGTTAATGACTCGATGCGGTGGAAACAACAAGAAGGAAGATGAGGGGCAGGGTAACAAGAAGGAAGATGAGGGGCATCGCATTTTGATTACAAATGTTGCTTCAATGCTGTCATTCAAAGGAAGTCCTTATTGGATGGCCCCCGAGGTGGCTGCAATATTTAAGATTGGAAACAGCAAAGGCATGCCAGATATTCCTGATTATCTTTCCCATGATGCAAAGAATTTTGTGAGGCTGTGCTTGCAATGGAACCCATCTGAGTGTGCTACTGCTTCTCAACTGCTAGACCACCCTTCCATTAGAGAGCAATTGTTGTCATGTTCGAACAAGTTATGGTGTTGA

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

6.81

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 105, 118
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 143
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 130, 262
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BfaI CTAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 141, 251
BmsI GCATC 3 cut(s) 5, 85, 205
Bpu14I TTCGAA 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 148
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 323
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 141, 251
BspT104I TTCGAA 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 185, 242
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 185, 242
Cfr13I GGNCC 1 cut(s) 139
CviAII CATG 3 cut(s) 184, 212, 318
CviJI RGCY 3 cut(s) 140, 152, 235
CviKI_1 RGCY 3 cut(s) 140, 152, 235
DdeI CTNAG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 143
FaeI CATG 3 cut(s) 187, 215, 321
FaiI YATR 4 cut(s) 185, 213, 319, 334
FatI CATG 3 cut(s) 183, 211, 317
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 3 cut(s) 187, 215, 321
HinfI GANTC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 28, 55, 303
HpyCH4V TGCA 3 cut(s) 155, 218, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 3 cut(s) 187, 215, 321
LpnPI CCDG 3 cut(s) 35, 201, 210
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 3 cut(s) 5, 85, 205
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 2 cut(s) 50, 77
MfeI CAATTG 1 cut(s) 308
MluCI AATT 2 cut(s) 223, 308
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 4 cut(s) 37, 64, 139, 225
MseI TTAA 2 cut(s) 5, 162
MslI CAYNNNNRTG 1 cut(s) 259
MunI CAATTG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 187, 215, 321
NlaIV GGNNCC 2 cut(s) 141, 251
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 323
PaeI GCATGC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 141, 251
PspPI GGNCC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 259
SaqAI TTAA 2 cut(s) 5, 162
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 4
SetI ASST 1 cut(s) 150
SfaNI GCATC 3 cut(s) 5, 85, 205
SfuI TTCGAA 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 259
SphI GCATGC 1 cut(s) 187
Sse9I AATT 2 cut(s) 223, 308
SsiI CCGC 1 cut(s) 18
SspI AATATT 1 cut(s) 159
SspMI CTAG 1 cut(s) 284
TaqI TCGA 2 cut(s) 13, 323
TasI AATT 2 cut(s) 223, 308
Tru1I TTAA 2 cut(s) 5, 162
Tru9I TTAA 2 cut(s) 5, 162
TseI GCWGC 1 cut(s) 152
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 187
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.