Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004100.1

Orthogroup ID

OG0019018

Physical Location & Seq

Genomic Coordinates Reverse (-)

45027 .. 46427

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004100.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgaaggaaggacagcaaagtaatagtgccaagattacttatagttctggcacaaaaaatctaagcgtggccttcaccacttatgatgatctgagtggtatccaagtaatcagttatttttcttacgaactagatctgaaaaaatacttgccggattgggttattgttgggttctcggcttcgacggggaggtctattactctgcataacatcatctcttggaatttttcttcaacttcgcttgttgactatgatttgtctctagttcctgcgccaggccttacttctaaagtcaagcccagaaaggacaataaacatctagttcttgttattggtgttgttgttggggggtttatgctggttggtgtgttaggtttgggtttgttcaactcttgcaagagaaaggcaacaggagaaagtagtattgaaatagagggcctgaggaggttttcttatggagaaatagctttggcgacgagaaattttgccgagggagaaaagcttggagagggagtagatggtgtggtttacaaaggcttcagatatgacttgaactcgtatgttacagttaagaagatgtccaagggatctacacaaatgaaggagtataaatcagacttgagaatcctgagtaaactacatcatcggaatctgatgcgactaattggttggtgcgacgaacaaggagaactaatacttgtttacgagttcatgccgaagggaagcttagatatccatttactcaaagtagacaacttgttgatttgggaggtcagatataaaattgctcaagatttggcctccgcgttgctatatctacacgaatattcaggggtaccatgtgttcataggaatatccaacctagcagtattatgttggattcgaatttggaagcaaaacttggaaattttctgtttactgaacttgtgcatgaagaatcacaaactacacttgtggttggaacagtgggctacctagatccagcatatttaatgacaggaaagacgagcaagatgtcagatgtttacagttttggtgttgttgctttggagatagcatgcgggagaaaacctacggagcccaattttgaagagaatcaaatctatttggtggaatgggtttgggagctgtacagagaagggaaaattattgaagcagcggacccaaaactgcgtggagattttgataagaaacaaatggagtgcttgatggttgttgggttgtggtgtgctcactctgactttcgtttcaggccttcaataggcgaggcgattcaagttcttaactttgaaactccattgccgcttctcatcctgtcaaatgacactacaggttcaagttctgaaagaagtacaagtgagtcttccaacatcgatggtgatagcgccaattcctcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

466

Amino Acids

51.99

Weight (kDa)

5.71

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019018)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0032411
rosa_laevigata	RLG00000033398
rosa_multiflora	Rmu_sc0004100.1_g000012 Rmu_sc0029101.1_g000001 Rmu_ssc0000100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047750 Rroxscaffold_1G00048010
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5CG251700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	190
Acc65I	GGTACC	1 cut(s)	835
AccB1I	GGYRCC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	1 cut(s)	806
AciI	CCGC	4 cut(s)	804, 1062, 1160, 1304
AclWI	GGATC	2 cut(s)	595, 974
AcsI	RAATTY	4 cut(s)	223, 481, 886, 907
AcuI	CTGAAG	1 cut(s)	523
AfaI	GTAC	3 cut(s)	837, 1133, 1354
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1262
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	4 cut(s)	467, 502, 726, 1129
AluI	AGCT	4 cut(s)	467, 502, 726, 1129
Alw21I	GWGCWC	1 cut(s)	1234
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	595, 974
AoxI	GGCC	5 cut(s)	69, 277, 436, 798, 1253
ApeKI	GCWGC	1 cut(s)	1157
ApoI	RAATTY	4 cut(s)	223, 481, 886, 907
Asp718I	GGTACC	1 cut(s)	835
AspLEI	GCGC	2 cut(s)	274, 1388
AspS9I	GGNCC	2 cut(s)	436, 1162
AsuHPI	GGTGA	2 cut(s)	67, 1391
AsuII	TTCGAA	1 cut(s)	884
AvaII	GGWCC	1 cut(s)	1162
AxyI	CCTNAGG	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	835
BanII	GRGCYC	1 cut(s)	1083
BbsI	GAAGAC	1 cut(s)	1356
Bbv12I	GWGCWC	1 cut(s)	1234
BbvI	GCAGC	1 cut(s)	1169
BccI	CCATC	3 cut(s)	512, 1204, 1370
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	5 cut(s)	131, 263, 320, 864, 977
BfmI	CTRYAG	1 cut(s)	1329
BfoI	RGCGCY	1 cut(s)	1389
BfuI	GTATCC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	2 cut(s)	1158, 1304
BlsI	GCNGC	2 cut(s)	1159, 1305
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	1162
BmgT120I	GGNCC	2 cut(s)	436, 1162
BmiI	GGNNCC	3 cut(s)	837, 1080, 1164
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	1356
Bpu14I	TTCGAA	1 cut(s)	884
BpuEI	CTTGAG	2 cut(s)	640, 774
Bsa29I	ATCGAT	1 cut(s)	1374
BsaJI	CCNNGG	2 cut(s)	489, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1262
Bse21I	CCTNAGG	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	1298
BseBI	CCWGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	1374
BseDI	CCNNGG	2 cut(s)	489, 582
BseGI	GGATG	1 cut(s)	1311
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1262
BseMI	GCAATG	1 cut(s)	1298
BseMII	CTCAG	3 cut(s)	83, 431, 620
BseRI	GAGGAG	1 cut(s)	457
BseXI	GCAGC	1 cut(s)	1169
Bsh1236I	CGCG	1 cut(s)	806
BshFI	GGCC	5 cut(s)	71, 279, 438, 800, 1255
BshNI	GGYRCC	1 cut(s)	835
BshVI	ATCGAT	1 cut(s)	1374
BsiHKAI	GWGCWC	1 cut(s)	1234
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	275, 1262
BsmAI	GTCTC	1 cut(s)	264
BsnI	GGCC	5 cut(s)	71, 279, 438, 800, 1255
Bsp119I	TTCGAA	1 cut(s)	884
Bsp1286I	GDGCHC	2 cut(s)	1083, 1234
Bsp1407I	TGTACA	1 cut(s)	1131
Bsp143I	GATC	4 cut(s)	88, 133, 587, 979
BspACI	CCGC	4 cut(s)	804, 1062, 1160, 1304
BspANI	GGCC	5 cut(s)	71, 279, 438, 800, 1255
BspCNI	CTCAG	3 cut(s)	84, 432, 621
BspDI	ATCGAT	1 cut(s)	1374
BspFNI	CGCG	1 cut(s)	806
BspLI	GGNNCC	3 cut(s)	837, 1080, 1164
BspPI	GGATC	2 cut(s)	595, 974
BspT104I	TTCGAA	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	1298
BsrGI	TGTACA	1 cut(s)	1131
BssECI	CCNNGG	2 cut(s)	489, 582
BssMI	GATC	4 cut(s)	88, 133, 587, 979
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	568, 967, 1031
Bst6I	CTCTTC	1 cut(s)	1086
BstAUI	TGTACA	1 cut(s)	1131
BstBI	TTCGAA	1 cut(s)	884
BstC8I	GCNNGC	1 cut(s)	1060
BstDEI	CTNAG	5 cut(s)	62, 92, 440, 629, 727
BstENI	CCTNNNNNAGG	2 cut(s)	273, 1260
BstF5I	GGATG	1 cut(s)	1311
BstFNI	CGCG	1 cut(s)	806
BstH2I	RGCGCY	1 cut(s)	1389
BstHHI	GCGC	2 cut(s)	274, 1388
BstKTI	GATC	4 cut(s)	91, 136, 590, 982
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	4 cut(s)	88, 133, 587, 979
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	1062
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	1329
BstUI	CGCG	1 cut(s)	806
BstV1I	GCAGC	1 cut(s)	1169
BstV2I	GAAGAC	1 cut(s)	1356
BstX2I	RGATCY	3 cut(s)	133, 587, 979
BstYI	RGATCY	3 cut(s)	133, 587, 979
Bsu15I	ATCGAT	1 cut(s)	1374
Bsu36I	CCTNAGG	1 cut(s)	440
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	5 cut(s)	71, 279, 438, 800, 1255
BsuTUI	ATCGAT	1 cut(s)	1374
BtsCI	GGATG	1 cut(s)	1311
BtsIMutI	CAGTG	1 cut(s)	972
Cac8I	GCNNGC	1 cut(s)	1060
CfoI	GCGC	2 cut(s)	274, 1388
Cfr13I	GGNCC	2 cut(s)	436, 1162
ClaI	ATCGAT	1 cut(s)	1374
Csp6I	GTAC	3 cut(s)	836, 1132, 1353
CviAII	CATG	4 cut(s)	712, 840, 932, 1059
CviQI	GTAC	3 cut(s)	836, 1132, 1353
DdeI	CTNAG	5 cut(s)	62, 92, 440, 629, 727
DpnI	GATC	4 cut(s)	90, 135, 589, 981
DpnII	GATC	4 cut(s)	88, 133, 587, 979
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	1086
EarI	CTCTTC	1 cut(s)	1086
Eco130I	CCWWGG	1 cut(s)	582
Eco147I	AGGCCT	2 cut(s)	279, 1255
Eco24I	GRGCYC	1 cut(s)	1083
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	1162
Eco57I	CTGAAG	1 cut(s)	523
Eco81I	CCTNAGG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	2 cut(s)	273, 1260
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	1083
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	4 cut(s)	715, 843, 935, 1062
FalI	AAGNNNNNCTT	6 cut(s)	710, 742, 885, 917, 1348, 1380
FatI	CATG	4 cut(s)	711, 839, 931, 1058
FauI	CCCGC	1 cut(s)	1055
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	2 cut(s)	1158, 1304
FokI	GGATG	1 cut(s)	1298
FriOI	GRGCYC	1 cut(s)	1083
Fsp4HI	GCNGC	2 cut(s)	1158, 1304
FspBI	CTAG	5 cut(s)	131, 263, 320, 864, 977
GlaI	GCGC	2 cut(s)	273, 1387
GluI	GCNGC	2 cut(s)	1158, 1304
HaeII	RGCGCY	1 cut(s)	1389
HaeIII	GGCC	5 cut(s)	71, 279, 438, 800, 1255
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	2 cut(s)	274, 1388
Hin1II	CATG	4 cut(s)	715, 843, 935, 1062
Hin6I	GCGC	2 cut(s)	272, 1386
HinP1I	GCGC	2 cut(s)	272, 1386
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	2 cut(s)	500, 724
HinfI	GANTC	7 cut(s)	624, 649, 881, 938, 1096, 1273, 1361
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	67, 1391
Hpy166II	GTNNAC	7 cut(s)	247, 529, 635, 703, 751, 918, 1027
Hpy188III	TCNNGA	2 cut(s)	628, 791
Hpy8I	GTNNAC	7 cut(s)	247, 529, 635, 703, 751, 918, 1027
Hpy99I	CGWCG	3 cut(s)	187, 478, 680
HpyAV	CCTTC	5 cut(s)	82, 595, 712, 1133, 1266
HpyCH4III	ACNGT	3 cut(s)	568, 967, 1031
HpyCH4V	TGCA	3 cut(s)	205, 396, 931
HpyF3I	CTNAG	5 cut(s)	62, 92, 440, 629, 727
Hsp92II	CATG	4 cut(s)	715, 843, 935, 1062
HspAI	GCGC	2 cut(s)	272, 1386
KpnI	GGTACC	1 cut(s)	839
Kzo9I	GATC	4 cut(s)	88, 133, 587, 979
LmnI	GCTCC	2 cut(s)	1078, 1126
Lsp1109I	GCAGC	1 cut(s)	1169
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	5 cut(s)	131, 263, 320, 864, 977
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	4 cut(s)	90, 135, 589, 981
MboI	GATC	4 cut(s)	88, 133, 587, 979
MboII	GAAGA	5 cut(s)	222, 586, 947, 1103, 1356
MflI	RGATCY	3 cut(s)	133, 587, 979
MhlI	GDGCHC	2 cut(s)	1083, 1234
MluCI	AATT	9 cut(s)	223, 481, 663, 783, 886, 907, 1084, 1146, 1390
MlyI	GAGTC	1 cut(s)	1370
MmeI	TCCRAC	4 cut(s)	858, 883, 940, 1392
MnlI	CCTC	9 cut(s)	183, 427, 435, 438, 484, 502, 763, 811, 1261
MseI	TTAA	3 cut(s)	570, 992, 1284
MspA1I	CMGCKG	1 cut(s)	1160
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	806
NdeII	GATC	4 cut(s)	88, 133, 587, 979
NlaIII	CATG	4 cut(s)	715, 843, 935, 1062
NlaIV	GGNNCC	3 cut(s)	837, 1080, 1164
NmeAIII	GCCGAG	2 cut(s)	155, 514
NspI	RCATGY	1 cut(s)	1062
NspV	TTCGAA	1 cut(s)	884
PaeI	GCATGC	1 cut(s)	1062
PceI	AGGCCT	2 cut(s)	279, 1255
PfeI	GAWTC	6 cut(s)	624, 649, 881, 938, 1096, 1273
PkrI	GCNGC	2 cut(s)	1159, 1305
PleI	GAGTC	1 cut(s)	1369
PpsI	GAGTC	1 cut(s)	1369
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	837, 1080, 1164
PspPI	GGNCC	2 cut(s)	436, 1162
PsrI	GAACNNNNNNTAC	2 cut(s)	828, 860
PsuI	RGATCY	3 cut(s)	133, 587, 979
RsaI	GTAC	3 cut(s)	837, 1133, 1354
RsaNI	GTAC	3 cut(s)	836, 1132, 1353
SaqAI	TTAA	3 cut(s)	570, 992, 1284
SatI	GCNGC	2 cut(s)	1158, 1304
Sau3AI	GATC	4 cut(s)	88, 133, 587, 979
Sau96I	GGNCC	2 cut(s)	436, 1162
SchI	GAGTC	1 cut(s)	1370
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	1083, 1234
SfaNI	GCATC	1 cut(s)	645
SfcI	CTRYAG	1 cut(s)	1329
SfuI	TTCGAA	1 cut(s)	884
SinI	GGWCC	1 cut(s)	1162
SmlI	CTYRAG	2 cut(s)	619, 789
SmoI	CTYRAG	2 cut(s)	619, 789
SphI	GCATGC	1 cut(s)	1062
Sse9I	AATT	9 cut(s)	223, 481, 663, 783, 886, 907, 1084, 1146, 1390
SseBI	AGGCCT	2 cut(s)	279, 1255
SsiI	CCGC	4 cut(s)	804, 1062, 1160, 1304
SspI	AATATT	1 cut(s)	827
SspMI	CTAG	5 cut(s)	131, 263, 320, 864, 977
StuI	AGGCCT	2 cut(s)	279, 1255
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	3 cut(s)	568, 967, 1031
TaqI	TCGA	3 cut(s)	182, 884, 1374
TasI	AATT	9 cut(s)	223, 481, 663, 783, 886, 907, 1084, 1146, 1390
TatI	WGTACW	2 cut(s)	1131, 1352
TauI	GCSGC	1 cut(s)	1306
TfiI	GAWTC	6 cut(s)	624, 649, 881, 938, 1096, 1273
Tru1I	TTAA	3 cut(s)	570, 992, 1284
Tru9I	TTAA	3 cut(s)	570, 992, 1284
TscAI	CASTG	1 cut(s)	972
TseI	GCWGC	1 cut(s)	1157
TspDTI	ATGAA	5 cut(s)	17, 614, 700, 836, 948
TspGWI	ACGGA	1 cut(s)	1091
TspRI	CASTG	1 cut(s)	972
VpaK11BI	GGWCC	1 cut(s)	1162
XagI	CCTNNNNNAGG	2 cut(s)	273, 1260
XapI	RAATTY	4 cut(s)	223, 481, 886, 907
XceI	RCATGY	1 cut(s)	1062
XmiI	GTMKAC	1 cut(s)	750
XspI	CTAG	5 cut(s)	131, 263, 320, 864, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.