Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029101.1

Orthogroup ID

OG0019018

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1115

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1115 bp

agttctggcacaaaaaatctaagcgtggccttcaccacttatgatgatctgagtggtatccaagtaatcagttatttttcttacgaactagatctgaaaaaatacttgccggattgggttattgttgggttctcggcttcgacggggaggtctattactctgcataacatcatctcttggaatttttcttcaacttcgcttgttgactatgatttgtctctagttcctgcgccaggccttacttctaaagtcaagcccagaaaggacaataaacatctagttcttgttattggtgttgttgttggggggtttatgctggttggtgtgttaggtttgggtttgttcaactcttgcaagagaaaggcaacaggagaaagtagtattgaaatagagggcctgaggaggttttcttatggagaaatagctttggcgacgagaaattttgccgagggagaaaagcttggagagggagtagatggtgtggtttacaaaggcttcagatatgacttgaactcgtatgttacagttaagaagatgtccaagggatctacacaaatgaaggagtataaatcagacttgagaatcctgagtaaactacatcatcggaatctgatgcgactaattggttggtgcgacgaacaaggagaactaatacttgtttacgagttcatgccgaagggaagcttagatatccatttactcaaagtagacaacttgttgatttgggaggtcagatataaaattgctcaagatttggcctccgcgttgctatatctacacgaatattcaggggtaccatgtgttcataggaatatccaacctagcagtattatgttggattcgaatttggaagcaaaacttggaaattttctgtttactgaacttgtgcatgaagaatcacaaactacacttgtggttggaacagtgggctacctagatccagcatatttaatgacaggaaagacgagcaagatgtcagatgtttacagttttggtgttgttgctttggagatagcatgcgggagaaaacctacggagcccaattttgaagagaatcaaatctatttggtggaatgggtttgggagctgtacagagaagggaaaattattgaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

372

Amino Acids

41.72

Weight (kDa)

6.11

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019018)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0032411
rosa_laevigata	RLG00000033398
rosa_multiflora	Rmu_sc0004100.1_g000012 Rmu_sc0029101.1_g000001 Rmu_ssc0000100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047750 Rroxscaffold_1G00048010
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5CG251700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc65I	GGTACC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	708
AccII	CGCG	1 cut(s)	764
AciI	CCGC	2 cut(s)	762, 1020
AclWI	GGATC	2 cut(s)	553, 932
AcsI	RAATTY	4 cut(s)	181, 439, 844, 865
AcuI	CTGAAG	1 cut(s)	481
AfaI	GTAC	2 cut(s)	795, 1091
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	6 cut(s)	192, 346, 386, 511, 1049, 1112
AjnI	CCWGG	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
AluBI	AGCT	4 cut(s)	425, 460, 684, 1087
AluI	AGCT	4 cut(s)	425, 460, 684, 1087
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	553, 932
AoxI	GGCC	4 cut(s)	27, 235, 394, 756
ApoI	RAATTY	4 cut(s)	181, 439, 844, 865
Asp718I	GGTACC	1 cut(s)	793
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	842
AxyI	CCTNAGG	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	793
BanII	GRGCYC	1 cut(s)	1041
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	5 cut(s)	89, 221, 278, 822, 935
BfuI	GTATCC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	795, 1038
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	842
BpuEI	CTTGAG	2 cut(s)	598, 732
BsaJI	CCNNGG	2 cut(s)	447, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	447, 540
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	3 cut(s)	41, 389, 578
BseRI	GAGGAG	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	764
BshFI	GGCC	4 cut(s)	29, 237, 396, 758
BshNI	GGYRCC	1 cut(s)	793
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	4 cut(s)	29, 237, 396, 758
Bsp119I	TTCGAA	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	1041
Bsp1407I	TGTACA	1 cut(s)	1089
Bsp143I	GATC	4 cut(s)	46, 91, 545, 937
BspACI	CCGC	2 cut(s)	762, 1020
BspANI	GGCC	4 cut(s)	29, 237, 396, 758
BspCNI	CTCAG	3 cut(s)	42, 390, 579
BspFNI	CGCG	1 cut(s)	764
BspLI	GGNNCC	2 cut(s)	795, 1038
BspPI	GGATC	2 cut(s)	553, 932
BspT104I	TTCGAA	1 cut(s)	842
BspT107I	GGYRCC	1 cut(s)	793
BsrGI	TGTACA	1 cut(s)	1089
BssECI	CCNNGG	2 cut(s)	447, 540
BssMI	GATC	4 cut(s)	46, 91, 545, 937
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	526, 925, 989
Bst6I	CTCTTC	1 cut(s)	1044
BstAUI	TGTACA	1 cut(s)	1089
BstBI	TTCGAA	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	1018
BstDEI	CTNAG	5 cut(s)	20, 50, 398, 587, 685
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	764
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	4 cut(s)	49, 94, 548, 940
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	4 cut(s)	46, 91, 545, 937
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	1020
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	764
BstX2I	RGATCY	3 cut(s)	91, 545, 937
BstYI	RGATCY	3 cut(s)	91, 545, 937
Bsu36I	CCTNAGG	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	4 cut(s)	29, 237, 396, 758
BtsIMutI	CAGTG	1 cut(s)	930
Cac8I	GCNNGC	1 cut(s)	1018
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	794, 1090
CviAII	CATG	4 cut(s)	670, 798, 890, 1017
CviQI	GTAC	2 cut(s)	794, 1090
DdeI	CTNAG	5 cut(s)	20, 50, 398, 587, 685
DpnI	GATC	4 cut(s)	48, 93, 547, 939
DpnII	GATC	4 cut(s)	46, 91, 545, 937
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco130I	CCWWGG	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	1041
Eco32I	GATATC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	481
Eco81I	CCTNAGG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	1041
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	4 cut(s)	673, 801, 893, 1020
FalI	AAGNNNNNCTT	4 cut(s)	668, 700, 843, 875
FatI	CATG	4 cut(s)	669, 797, 889, 1016
FauI	CCCGC	1 cut(s)	1013
FblI	GTMKAC	1 cut(s)	708
FriOI	GRGCYC	1 cut(s)	1041
FspBI	CTAG	5 cut(s)	89, 221, 278, 822, 935
GlaI	GCGC	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	29, 237, 396, 758
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	4 cut(s)	673, 801, 893, 1020
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	2 cut(s)	458, 682
HinfI	GANTC	5 cut(s)	582, 607, 839, 896, 1054
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	7 cut(s)	205, 487, 593, 661, 709, 876, 985
Hpy188I	TCNGA	8 cut(s)	51, 96, 500, 574, 606, 612, 734, 979
Hpy188III	TCNNGA	2 cut(s)	586, 749
Hpy8I	GTNNAC	7 cut(s)	205, 487, 593, 661, 709, 876, 985
Hpy99I	CGWCG	3 cut(s)	145, 436, 638
HpyAV	CCTTC	4 cut(s)	40, 553, 670, 1091
HpyCH4III	ACNGT	3 cut(s)	526, 925, 989
HpyCH4V	TGCA	3 cut(s)	163, 354, 889
HpyF3I	CTNAG	5 cut(s)	20, 50, 398, 587, 685
Hsp92II	CATG	4 cut(s)	673, 801, 893, 1020
HspAI	GCGC	1 cut(s)	230
KpnI	GGTACC	1 cut(s)	797
Kzo9I	GATC	4 cut(s)	46, 91, 545, 937
LmnI	GCTCC	2 cut(s)	1036, 1084
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	5 cut(s)	89, 221, 278, 822, 935
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	48, 93, 547, 939
MboI	GATC	4 cut(s)	46, 91, 545, 937
MboII	GAAGA	4 cut(s)	180, 544, 905, 1061
MflI	RGATCY	3 cut(s)	91, 545, 937
MhlI	GDGCHC	1 cut(s)	1041
MluCI	AATT	8 cut(s)	181, 439, 621, 741, 844, 865, 1042, 1104
MmeI	TCCRAC	3 cut(s)	816, 841, 898
MnlI	CCTC	8 cut(s)	141, 385, 393, 396, 442, 460, 721, 769
MseI	TTAA	2 cut(s)	528, 950
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	764
NdeII	GATC	4 cut(s)	46, 91, 545, 937
NlaIII	CATG	4 cut(s)	673, 801, 893, 1020
NlaIV	GGNNCC	2 cut(s)	795, 1038
NmeAIII	GCCGAG	2 cut(s)	113, 472
NspI	RCATGY	1 cut(s)	1020
NspV	TTCGAA	1 cut(s)	842
PaeI	GCATGC	1 cut(s)	1020
PceI	AGGCCT	1 cut(s)	237
PfeI	GAWTC	5 cut(s)	582, 607, 839, 896, 1054
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	795, 1038
PspPI	GGNCC	1 cut(s)	394
PsrI	GAACNNNNNNTAC	2 cut(s)	786, 818
PsuI	RGATCY	3 cut(s)	91, 545, 937
RsaI	GTAC	2 cut(s)	795, 1091
RsaNI	GTAC	2 cut(s)	794, 1090
SaqAI	TTAA	2 cut(s)	528, 950
Sau3AI	GATC	4 cut(s)	46, 91, 545, 937
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	1041
SfaNI	GCATC	1 cut(s)	603
SfuI	TTCGAA	1 cut(s)	842
SmlI	CTYRAG	2 cut(s)	577, 747
SmoI	CTYRAG	2 cut(s)	577, 747
SphI	GCATGC	1 cut(s)	1020
Sse9I	AATT	8 cut(s)	181, 439, 621, 741, 844, 865, 1042, 1104
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	762, 1020
SspI	AATATT	1 cut(s)	785
SspMI	CTAG	5 cut(s)	89, 221, 278, 822, 935
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	526, 925, 989
TaqI	TCGA	2 cut(s)	140, 842
TasI	AATT	8 cut(s)	181, 439, 621, 741, 844, 865, 1042, 1104
TatI	WGTACW	1 cut(s)	1089
TfiI	GAWTC	5 cut(s)	582, 607, 839, 896, 1054
Tru1I	TTAA	2 cut(s)	528, 950
Tru9I	TTAA	2 cut(s)	528, 950
TscAI	CASTG	1 cut(s)	930
TspDTI	ATGAA	4 cut(s)	572, 658, 794, 906
TspGWI	ACGGA	1 cut(s)	1049
TspRI	CASTG	1 cut(s)	930
XagI	CCTNNNNNAGG	1 cut(s)	231
XapI	RAATTY	4 cut(s)	181, 439, 844, 865
XceI	RCATGY	1 cut(s)	1020
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	5 cut(s)	89, 221, 278, 822, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.