Rroxscaffold_1G00047750

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
67578985 .. 67580949
1965 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00047750.1

Sequence Viewer

Length: 1965 bp
ATGGTTGCCAACAAGTACTCTACAGTCATCACTATTGTCCTGTTTCTGTTAAGCCCTTGTGCAACTCCATTGACCTTTGATTTCCCCAGTTTTGCCAGTAGTGTCAACAACACTGTATCTCTGGAGGGAGATGCTTTTATCGACGGCAAACTCCTCCGTCTCACCAAAAGCGCTCTAGAAGACTCGCAAAACGTGAGCGTTGGTCGAGCCACCTACACACAACCCTTCCTACTCCGCGAAAGTGCCACCGGAAACCTAGCCGATTTCAGCACAAGTTTCACATTCGCCATCAACTCTCAAAACAGAAACTCTTACGGAGAGGGGCTCGCCTTCTTCCTAGCTCCACAAGGAACCTCACTACGTAACAGCTCAGCAGGATCTAGTGGTAGTCACGGCCTCCCTGTCAACAGTACCCTTTCAAATGAGTACCCCTATGCGGCGGTGGAGTTTGACATCTTCCAGAGTGAAAATACAGCCATCGGAGATCCCAGCTACTCATACGGTCATGTGGGTATCGACGTCAGCTCTCTCAACTCCGTTATCACCAAGCCTTGGTATGTAAGTATGAAGGAAGGACAGCAAAGTAATGGTGCCAAGATTAGTTATAGTTCTGGCACAAAAAATCTAAGCGTGGCCTACACCACTTACGATGATCTGAGTGGTATCCAAGTAATCAGTTATTTTTCTTACGAACTAGATCTGAAAAAATACTTGCCGGATTGGGTTGTTGTTGGGTTCTCGGCTTCGACGGGGAGGTCTATTACTCTGCATAACATCATCTCTTGGAATTTTTCTTCAACTTCGCTTGTTGACTATGATTTGTCTCTAGTTCCTGCGCTAGGCCTTACTTCTAAAGTCAAGCCCAGAAAGGACAATAAACATCTAGTTCTTGTTATTGGTGTTGTTGTTGGGGGATTTATGCTGGTTGGTGTGTTAGGTTTGGGCTTGTTCAACTCTTGCAAGAGAATGGCAACAGGAGAAAGTAGTACTGATATAGAGGGCCTGAGGAGGTTTTCGTATGGAGAAATAGCTTTGGCGACAAGAAATTTTGCTGAGGGAGAAAAGCTTGGAGAGGGAGTAGATGGTCAGGTTTACAAAGGCTTCAGATATGACTTGAACTCGTATGTTGCAGTTAAAAGGATGTCCAAGGAATCTACACAAAGGAAGGAGTATAAATCAGACTTGAGAATCCTGACTAAACTACATCATCGGAATCTGATGCGACTAATTGGTTGGTGCGACGAACAAGGAGAACTAATACTTGTTTACGACTTCATGCCGAAGGGTAGCTTAGATTTCCATTTGCTCAAAGCAGACAACTTGTTAATTTGGGAGGTCAGATATAAAATTGCTCAAGAATTGGCCTCCGCGTTGCTATATCTACACCAAGAATGGGACTTACATCGTCTGAATGGAAATATCCAATCTAGCAATATTATGTTGGATTCGAATTTGAATGCAAAACTTGGAAATATTCTGTTTACTGAACTTTTGCATGAAGAATCACAAACTACACTTGTGGTTGGAACAGTGGGCTACCTAGATCCAGCATATTCAATGACAGGAAAGACAAGCAAGATGTCAGATGTATACAGTTTTGGTGTTGTTGCTTTGGAGATAGCATGCGGGAGAAAACCTACGGAGCCCAATTTTGAAGAGAATCAAATCTATTTGGTGGAATGGGTTTGGGAGCTGTACAGAGAAGGGAAAATTATTGAAGCAGCGGACCCAAAACTGCGTGGAGATTTTGATAAGAAACAAATGGAGTGCTTGATGGTTGTTGGGTTGTGGTGTACTCACTCTGACTTTCTTTTCAGGCCTTCAATAGACGGGGCGATTCAAGTTCTTAACTTTGAAGCTCCATTGCCGCTTCTCATCCTGTCAGATGACACTACTGGTTCAAGTTCTGAAAGAAGTACAAGTGAGTCTTCCAACATCTATGGTGATAGCGCCAATTCCCCGTAG

Protein Analysis

654

Amino Acids

72.27

Weight (kDa)

5.27

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 24 - 268 1.3e-55 Legume lectin domain
Lectin_L-type_dom PF18483 35 - 259 1.3e-07 Legume lectin beta-barrel domain
Pkinase PF00069 351 - 551 1.9e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 353 - 550 2.6e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019018)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 754
AatII GACGTC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 552
AccI GTMKAC 1 cut(s) 1590
AccII CGCG 2 cut(s) 237, 1370
AciI CCGC 7 cut(s) 235, 437, 440, 1368, 1626, 1724, 1868
AclWI GGATC 3 cut(s) 385, 479, 1538
AcsI RAATTY 3 cut(s) 787, 1045, 1450
AcuI CTGAAG 1 cut(s) 1087
AcyI GRCGYC 1 cut(s) 519
AfaI GTAC 7 cut(s) 17, 412, 428, 988, 1697, 1795, 1918
AfeI AGCGCT 1 cut(s) 172
AfiI CCNNNNNNNGG 4 cut(s) 436, 552, 839, 1393
AluBI AGCT 9 cut(s) 341, 369, 492, 525, 1031, 1066, 1290, 1693, 1859
AluI AGCT 9 cut(s) 341, 369, 492, 525, 1031, 1066, 1290, 1693, 1859
Alw26I GTCTC 2 cut(s) 164, 828
AlwI GGATC 3 cut(s) 385, 479, 1538
Aor51HI AGCGCT 1 cut(s) 172
AoxI GGCC 6 cut(s) 394, 633, 841, 1000, 1362, 1817
ApeKI GCWGC 1 cut(s) 1721
ApoI RAATTY 3 cut(s) 787, 1045, 1450
AspLEI GCGC 3 cut(s) 173, 838, 1952
AspS9I GGNCC 2 cut(s) 1000, 1726
AsuHPI GGTGA 3 cut(s) 154, 535, 1955
AsuII TTCGAA 1 cut(s) 1448
AvaII GGWCC 1 cut(s) 1726
AxyI CCTNAGG 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 2 cut(s) 327, 1647
BbsI GAAGAC 2 cut(s) 186, 1920
BbvCI CCTCAGC 1 cut(s) 1053
BbvI GCAGC 1 cut(s) 1733
BccI CCATC 4 cut(s) 296, 485, 1076, 1768
BceAI ACGGC 2 cut(s) 160, 409
BciVI GTATCC 1 cut(s) 674
BcoDI GTCTC 2 cut(s) 164, 828
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 2 cut(s) 174, 1953
BfuI GTATCC 1 cut(s) 674
BglII AGATCT 1 cut(s) 697
BisI GCNGC 3 cut(s) 438, 1722, 1868
BlpI GCTNAGC 1 cut(s) 370
BlsI GCNGC 3 cut(s) 439, 1723, 1869
BmcAI AGTACT 2 cut(s) 17, 988
Bme18I GGWCC 1 cut(s) 1726
BmgT120I GGNCC 2 cut(s) 1000, 1726
BmiI GGNNCC 4 cut(s) 352, 592, 1644, 1728
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 121, 1209
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 2 cut(s) 186, 1920
BplI GAGNNNNNCTC 2 cut(s) 309, 341
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 1053
Bpu1102I GCTNAGC 1 cut(s) 370
Bpu14I TTCGAA 1 cut(s) 1448
BpuEI CTTGAG 2 cut(s) 1204, 1338
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 551, 1146
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 552, 839, 1393
Bse1I ACTGG 3 cut(s) 87, 96, 1900
Bse21I CCTNAGG 1 cut(s) 1004
Bse3DI GCAATG 1 cut(s) 1862
BseDI CCNNGG 2 cut(s) 551, 1146
BseGI GGATG 2 cut(s) 1146, 1875
BseLI CCNNNNNNNGG 4 cut(s) 436, 552, 839, 1393
BseMI GCAATG 1 cut(s) 1862
BseMII CTCAG 4 cut(s) 384, 647, 995, 1044
BseNI ACTGG 3 cut(s) 87, 96, 1900
BseRI GAGGAG 2 cut(s) 143, 1021
BseXI GCAGC 1 cut(s) 1733
BseYI CCCAGC 1 cut(s) 488
Bsh1236I CGCG 2 cut(s) 237, 1370
BshFI GGCC 6 cut(s) 396, 635, 843, 1002, 1364, 1819
BshNI GGYRCC 1 cut(s) 590
BsiSI CCGG 2 cut(s) 249, 716
BslFI GGGAC 1 cut(s) 1409
BslI CCNNNNNNNGG 4 cut(s) 436, 552, 839, 1393
BsmAI GTCTC 2 cut(s) 164, 828
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 1409
BsmI GAATGC 1 cut(s) 1462
BsnI GGCC 6 cut(s) 396, 635, 843, 1002, 1364, 1819
Bsp119I TTCGAA 1 cut(s) 1448
Bsp1286I GDGCHC 2 cut(s) 327, 1647
Bsp1407I TGTACA 1 cut(s) 1695
Bsp143I GATC 5 cut(s) 377, 484, 652, 697, 1543
Bsp1720I GCTNAGC 1 cut(s) 370
BspACI CCGC 7 cut(s) 235, 437, 440, 1368, 1626, 1724, 1868
BspANI GGCC 6 cut(s) 396, 635, 843, 1002, 1364, 1819
BspCNI CTCAG 4 cut(s) 383, 648, 996, 1045
BspFNI CGCG 2 cut(s) 237, 1370
BspLI GGNNCC 4 cut(s) 352, 592, 1644, 1728
BspPI GGATC 3 cut(s) 385, 479, 1538
BspT104I TTCGAA 1 cut(s) 1448
BspT107I GGYRCC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 1862
BsrGI TGTACA 1 cut(s) 1695
BsrI ACTGG 3 cut(s) 87, 96, 1900
BssECI CCNNGG 2 cut(s) 551, 1146
BssMI GATC 5 cut(s) 377, 484, 652, 697, 1543
BssNAI GTATAC 1 cut(s) 1591
BssNI GRCGYC 1 cut(s) 519
BssT1I CCWWGG 2 cut(s) 551, 1146
Bst1107I GTATAC 1 cut(s) 1591
Bst4CI ACNGT 6 cut(s) 25, 115, 410, 503, 1531, 1595
Bst6I CTCTTC 1 cut(s) 1650
BstACI GRCGYC 1 cut(s) 519
BstAUI TGTACA 1 cut(s) 1695
BstBAI YACGTR 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 1448
BstC8I GCNNGC 2 cut(s) 327, 1624
BstDEI CTNAG 6 cut(s) 370, 626, 656, 1004, 1053, 1291
BstENI CCTNNNNNAGG 1 cut(s) 837
BstF5I GGATG 2 cut(s) 1146, 1875
BstFNI CGCG 2 cut(s) 237, 1370
BstH2I RGCGCY 2 cut(s) 174, 1953
BstHHI GCGC 3 cut(s) 173, 838, 1952
BstKTI GATC 5 cut(s) 380, 487, 655, 700, 1546
BstMAI GTCTC 2 cut(s) 164, 828
BstMBI GATC 5 cut(s) 377, 484, 652, 697, 1543
BstNSI RCATGY 1 cut(s) 1626
BstSFI CTRYAG 1 cut(s) 21
BstSNI TACGTA 1 cut(s) 362
BstUI CGCG 2 cut(s) 237, 1370
BstV1I GCAGC 1 cut(s) 1733
BstV2I GAAGAC 2 cut(s) 186, 1920
BstX2I RGATCY 4 cut(s) 377, 484, 697, 1543
BstYI RGATCY 4 cut(s) 377, 484, 697, 1543
BstZ17I GTATAC 1 cut(s) 1591
Bsu36I CCTNAGG 1 cut(s) 1004
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 6 cut(s) 396, 635, 843, 1002, 1364, 1819
BtsCI GGATG 2 cut(s) 1146, 1875
BtsIMutI CAGTG 2 cut(s) 111, 1536
Cac8I GCNNGC 2 cut(s) 327, 1624
CfoI GCGC 3 cut(s) 173, 838, 1952
Cfr13I GGNCC 2 cut(s) 1000, 1726
Csp6I GTAC 7 cut(s) 16, 411, 427, 987, 1696, 1794, 1917
CviAII CATG 4 cut(s) 506, 1276, 1496, 1623
CviQI GTAC 7 cut(s) 16, 411, 427, 987, 1696, 1794, 1917
DdeI CTNAG 6 cut(s) 370, 626, 656, 1004, 1053, 1291
DpnI GATC 5 cut(s) 379, 486, 654, 699, 1545
DpnII GATC 5 cut(s) 377, 484, 652, 697, 1543
DrdI GACNNNNNNGTC 1 cut(s) 754
DseDI GACNNNNNNGTC 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 1650
EarI CTCTTC 1 cut(s) 1650
Eco105I TACGTA 1 cut(s) 362
Eco130I CCWWGG 2 cut(s) 551, 1146
Eco147I AGGCCT 2 cut(s) 843, 1819
Eco24I GRGCYC 2 cut(s) 327, 1647
Eco47I GGWCC 1 cut(s) 1726
Eco47III AGCGCT 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 1087
Eco81I CCTNAGG 1 cut(s) 1004
EcoNI CCTNNNNNAGG 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 1000
EcoT14I CCWWGG 2 cut(s) 551, 1146
EcoT38I GRGCYC 2 cut(s) 327, 1647
ErhI CCWWGG 2 cut(s) 551, 1146
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 4 cut(s) 509, 1279, 1499, 1626
FalI AAGNNNNNCTT 4 cut(s) 1274, 1306, 1912, 1944
FaqI GGGAC 1 cut(s) 1409
FatI CATG 4 cut(s) 505, 1275, 1495, 1622
FauI CCCGC 1 cut(s) 1619
FblI GTMKAC 1 cut(s) 1590
Fnu4HI GCNGC 3 cut(s) 438, 1722, 1868
FokI GGATG 2 cut(s) 1153, 1862
FriOI GRGCYC 2 cut(s) 327, 1647
Fsp4HI GCNGC 3 cut(s) 438, 1722, 1868
GlaI GCGC 3 cut(s) 172, 837, 1951
GluI GCNGC 3 cut(s) 438, 1722, 1868
GsaI CCCAGC 1 cut(s) 492
GsuI CTGGAG 1 cut(s) 143
HaeII RGCGCY 2 cut(s) 174, 1953
HaeIII GGCC 6 cut(s) 396, 635, 843, 1002, 1364, 1819
HapII CCGG 2 cut(s) 249, 716
HhaI GCGC 3 cut(s) 173, 838, 1952
Hin1I GRCGYC 1 cut(s) 519
Hin1II CATG 4 cut(s) 509, 1279, 1499, 1626
Hin6I GCGC 3 cut(s) 171, 836, 1950
HinP1I GCGC 3 cut(s) 171, 836, 1950
HincII GTYRAC 3 cut(s) 106, 406, 811
HindII GTYRAC 3 cut(s) 106, 406, 811
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 9 cut(s) 182, 1151, 1188, 1213, 1445, 1502, 1660, 1837, 1925
HpaII CCGG 2 cut(s) 249, 716
HphI GGTGA 3 cut(s) 154, 535, 1955
Hpy166II GTNNAC 8 cut(s) 106, 406, 811, 1093, 1267, 1482, 1591, 1794
Hpy188III TCNNGA 5 cut(s) 122, 176, 460, 1192, 1355
Hpy8I GTNNAC 8 cut(s) 106, 406, 811, 1093, 1267, 1482, 1591, 1794
Hpy99I CGWCG 4 cut(s) 146, 521, 751, 1244
HpyAV CCTTC 8 cut(s) 235, 340, 562, 566, 1159, 1276, 1697, 1830
HpyCH4III ACNGT 6 cut(s) 25, 115, 410, 503, 1531, 1595
HpyCH4IV ACGT 3 cut(s) 192, 361, 519
HpyCH4V TGCA 6 cut(s) 62, 769, 960, 1130, 1460, 1495
HpyF3I CTNAG 6 cut(s) 370, 626, 656, 1004, 1053, 1291
HpySE526I ACGT 3 cut(s) 192, 361, 519
Hsp92I GRCGYC 1 cut(s) 519
Hsp92II CATG 4 cut(s) 509, 1279, 1499, 1626
HspAI GCGC 3 cut(s) 171, 836, 1950
Kzo9I GATC 5 cut(s) 377, 484, 652, 697, 1543
LmnI GCTCC 4 cut(s) 346, 1642, 1690, 1864
Lsp1109I GCAGC 1 cut(s) 1733
LweI GCATC 2 cut(s) 121, 1209
MaeII ACGT 3 cut(s) 192, 361, 519
MaeIII GTNAC 2 cut(s) 362, 389
MalI GATC 5 cut(s) 379, 486, 654, 699, 1545
MboI GATC 5 cut(s) 377, 484, 652, 697, 1543
MboII GAAGA 7 cut(s) 191, 325, 448, 786, 1511, 1667, 1920
MflI RGATCY 4 cut(s) 377, 484, 697, 1543
MhlI GDGCHC 2 cut(s) 327, 1647
MlyI GAGTC 2 cut(s) 176, 1934
MmeI TCCRAC 3 cut(s) 1422, 1504, 1956
MseI TTAA 4 cut(s) 50, 1134, 1325, 1848
MspA1I CMGCKG 1 cut(s) 1724
MspI CCGG 2 cut(s) 249, 716
Mva1269I GAATGC 1 cut(s) 1462
MvnI CGCG 2 cut(s) 237, 1370
NdeII GATC 5 cut(s) 377, 484, 652, 697, 1543
NlaIII CATG 4 cut(s) 509, 1279, 1499, 1626
NlaIV GGNNCC 4 cut(s) 352, 592, 1644, 1728
NmeAIII GCCGAG 1 cut(s) 719
NmuCI GTSAC 1 cut(s) 389
NspI RCATGY 1 cut(s) 1626
NspV TTCGAA 1 cut(s) 1448
PaeI GCATGC 1 cut(s) 1626
PceI AGGCCT 2 cut(s) 843, 1819
PctI GAATGC 1 cut(s) 1462
PfeI GAWTC 7 cut(s) 1151, 1188, 1213, 1445, 1502, 1660, 1837
PflMI CCANNNNNTGG 1 cut(s) 552
PkrI GCNGC 3 cut(s) 439, 1723, 1869
PleI GAGTC 2 cut(s) 176, 1933
PpsI GAGTC 2 cut(s) 176, 1933
Ppu21I YACGTR 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 488
PspN4I GGNNCC 4 cut(s) 352, 592, 1644, 1728
PspPI GGNCC 2 cut(s) 1000, 1726
PsuI RGATCY 4 cut(s) 377, 484, 697, 1543
RsaI GTAC 7 cut(s) 17, 412, 428, 988, 1697, 1795, 1918
RsaNI GTAC 7 cut(s) 16, 411, 427, 987, 1696, 1794, 1917
SaqAI TTAA 4 cut(s) 50, 1134, 1325, 1848
SatI GCNGC 3 cut(s) 438, 1722, 1868
Sau3AI GATC 5 cut(s) 377, 484, 652, 697, 1543
Sau96I GGNCC 2 cut(s) 1000, 1726
ScaI AGTACT 2 cut(s) 17, 988
SchI GAGTC 2 cut(s) 176, 1934
SduI GDGCHC 2 cut(s) 327, 1647
SfaNI GCATC 2 cut(s) 121, 1209
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 1448
SinI GGWCC 1 cut(s) 1726
SmlI CTYRAG 2 cut(s) 1183, 1353
SmoI CTYRAG 2 cut(s) 1183, 1353
SnaBI TACGTA 1 cut(s) 362
SphI GCATGC 1 cut(s) 1626
SseBI AGGCCT 2 cut(s) 843, 1819
SsiI CCGC 7 cut(s) 235, 437, 440, 1368, 1626, 1724, 1868
SspI AATATT 2 cut(s) 1435, 1474
StuI AGGCCT 2 cut(s) 843, 1819
StyI CCWWGG 2 cut(s) 551, 1146
TaaI ACNGT 6 cut(s) 25, 115, 410, 503, 1531, 1595
TaiI ACGT 3 cut(s) 195, 364, 522
TaqI TCGA 5 cut(s) 141, 205, 516, 746, 1448
TatI WGTACW 5 cut(s) 15, 986, 1695, 1793, 1916
TauI GCSGC 2 cut(s) 440, 1870
TfiI GAWTC 7 cut(s) 1151, 1188, 1213, 1445, 1502, 1660, 1837
Tru1I TTAA 4 cut(s) 50, 1134, 1325, 1848
Tru9I TTAA 4 cut(s) 50, 1134, 1325, 1848
TscAI CASTG 2 cut(s) 118, 1536
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 1721
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 581, 1264, 1512
TspGWI ACGGA 4 cut(s) 146, 330, 526, 1655
TspRI CASTG 2 cut(s) 118, 1536
Van91I CCANNNNNTGG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 1726
XagI CCTNNNNNAGG 1 cut(s) 837
XapI RAATTY 3 cut(s) 787, 1045, 1450
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 1626
XmiI GTMKAC 1 cut(s) 1590
ZraI GACGTC 1 cut(s) 520
ZrmI AGTACT 2 cut(s) 17, 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.