Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019018

Physical Location & Seq

Genomic Coordinates Reverse (-)

68026228 .. 68028360

Gene Structure 2133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGACTTTCTTCTTATCGGAACTTTTGCCAGTAGTGTCAACAACACTGTATCTCTGGGAGGGAGATGCTTTTATCGACGGCAAACTCCTCCGTCTCACCAAAAGCGCTCTAGAAGACTCGCAAAACGTGAGCGTTGGTCGAGCCACCTACACACAACCCTTCCTACTCCGCGAAAGTGCCACCGGAAACCTAGCCGATTTCAGCACAAGTTTCACATTCGCCATCAACTCTCAAAACAGAAACTCTTACGGAGAGGGGCTCGCCTTCTTCCTAGCTCCACAAGGAACCTCACTACGTAACAGCTCAGCAGGATCTAGTGGTAGTCACGGCCTCCCTGTCAACAGTACCCTTTCAAATGAGTACCCCTATGCGGCGGTGGAGTTTGACATCTTCCAGAGTGAAAATACAGCCATCGGAGATCCCAGCTACTCATACGGTCATGTGGGTATCGACGTCAGCTCTCTCAACTCCGTTATCACCAAGCCTTGTTATTTTTCTTACGAACTAGATCTGAAAAAATACTTGCCGGATTGGGTTGTTGTTGGGTTCTCGGCTTCGACGGGGAGGTCTATTACTCTGCATAACATCATCTCTTGGAATTTTTCTTCAACTTCGCTTGTTGACTATGATTTGTCTCTAGTTCCTGCGCTAGGCCTTACTTCTAAAGTCAAGCCCAGAAAGGACAATAAACATCTAGTTCTTGTTATTGGTGTTGTTGTTGGGGGATTTATGCTGGTTGGTGTGTTAGGTTTGGGCTTGTTCAACTCTTGCAAGAGAATGGCAACAGGAGAAAGTAGTACTGATATAGAGGGCCTGAGGAGGTTTTCGTATGGAGAAATAGCTTTGGCGACAAGAAATTTTGCTGAGGGAGAAAAGCTTGGAGAGGGAGTAGATGGTCAGGTTTACAAAGGCTTCAGATATGACTTGAACTCGTATGTTGCAGTTAAAAGGATGTCCAAGGAATCTACACAAAGGAAGGAGTATAAATCAGACTTGAGAATCCTGACTAAACTACATCATCGGAATCTGATGCGACTAATTGGTTGGTGCGACGAACAAGGAGAACTAATACTTGTTTACGACTTCATGCCGAAGGGTAGCTTAGATTTCCATTTGCTCAAAGCAGACAACTTGTTAATTTGGGAGGTCAGATATAAAATTGCTCAAGAATTGGCCTCCGCGTTGCTATATCTACACCAAGAATGGGACTTACATCAATCACAAACTACACTTGTGGTTGGAACAGTGGGCTACCTAGATCCAGCATATTCAATGACAGGAAAGACAAGCAAGATGTCAGATGTATACAGTTTTGGTGTTGTTGCTTTGGAGATAGCATGCGGGAGAAAACCTACGGAGCCCAATTTTGAAGAGAATCAAATCTATTTGGTGGAATGGGTTTGGGAGCTGTACAGAGAAGGGAAAATTATTGAAGCAGCGGACCCAAAACTGCGTGGAGATTTTGATAAGAAACAAATGGAGTGCTTGATGGTTGTTGGGTTGTGGTGTACTCACTCTGACTTTCTTTTCAGGCCTTCAATAGACGGGGCGATTCAAGTTCTTAACTTTGAAGCTCCATTGCCGCTTCTCATCCTGTCAGATGACACTACTGGTTCAAGTTCTGAAAGAAGTACAAGTGAGTCTTCCAACATCTATGGTGATAGCGCCAATTCCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

559

Amino Acids

62.1

Weight (kDa)

5.25

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	19 - 162	9.1e-31	Legume lectin domain
Lectin_legB	PF00139	164 - 205	2.4e-10	Legume lectin domain
Pkinase	PF00069	288 - 402	3.3e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	290 - 406	2.1e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019018)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0032411
rosa_laevigata	RLG00000033398
rosa_multiflora	Rmu_sc0004100.1_g000012 Rmu_sc0029101.1_g000001 Rmu_ssc0000100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047750 Rroxscaffold_1G00048010
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5CG251700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AatII	GACGTC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	1305
AccII	CGCG	2 cut(s)	171, 1181
AciI	CCGC	7 cut(s)	169, 371, 374, 1179, 1341, 1439, 1583
AclWI	GGATC	3 cut(s)	319, 413, 1253
AcsI	RAATTY	2 cut(s)	598, 856
AcuI	CTGAAG	1 cut(s)	898
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	6 cut(s)	346, 362, 799, 1412, 1510, 1633
AfeI	AGCGCT	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	370, 650, 1204
AluBI	AGCT	9 cut(s)	275, 303, 426, 459, 842, 877, 1101, 1408, 1574
AluI	AGCT	9 cut(s)	275, 303, 426, 459, 842, 877, 1101, 1408, 1574
Alw26I	GTCTC	2 cut(s)	98, 639
AlwI	GGATC	3 cut(s)	319, 413, 1253
Aor51HI	AGCGCT	1 cut(s)	106
AoxI	GGCC	5 cut(s)	328, 652, 811, 1173, 1532
ApeKI	GCWGC	1 cut(s)	1436
ApoI	RAATTY	2 cut(s)	598, 856
AspLEI	GCGC	3 cut(s)	107, 649, 1667
AspS9I	GGNCC	2 cut(s)	811, 1441
AsuHPI	GGTGA	3 cut(s)	88, 469, 1670
AvaII	GGWCC	1 cut(s)	1441
AxyI	CCTNAGG	1 cut(s)	815
BanII	GRGCYC	2 cut(s)	261, 1362
BbsI	GAAGAC	2 cut(s)	120, 1635
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	1 cut(s)	1448
BccI	CCATC	4 cut(s)	230, 419, 887, 1483
BceAI	ACGGC	2 cut(s)	94, 343
BcoDI	GTCTC	2 cut(s)	98, 639
BfaI	CTAG	9 cut(s)	110, 191, 272, 315, 506, 638, 650, 695, 1256
BfoI	RGCGCY	2 cut(s)	108, 1668
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	3 cut(s)	372, 1437, 1583
BlpI	GCTNAGC	1 cut(s)	304
BlsI	GCNGC	3 cut(s)	373, 1438, 1584
BmcAI	AGTACT	1 cut(s)	799
Bme18I	GGWCC	1 cut(s)	1441
BmgT120I	GGNCC	2 cut(s)	811, 1441
BmiI	GGNNCC	3 cut(s)	286, 1359, 1443
BmsI	GCATC	2 cut(s)	55, 1020
BpiI	GAAGAC	2 cut(s)	120, 1635
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
Bpu10I	CCTNAGC	1 cut(s)	864
Bpu1102I	GCTNAGC	1 cut(s)	304
BpuEI	CTTGAG	2 cut(s)	1015, 1149
BsaAI	YACGTR	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	957
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 650, 1204
Bse1I	ACTGG	2 cut(s)	29, 1615
Bse21I	CCTNAGG	1 cut(s)	815
Bse3DI	GCAATG	1 cut(s)	1577
BseDI	CCNNGG	1 cut(s)	957
BseGI	GGATG	2 cut(s)	957, 1590
BseLI	CCNNNNNNNGG	3 cut(s)	370, 650, 1204
BseMI	GCAATG	1 cut(s)	1577
BseMII	CTCAG	3 cut(s)	318, 806, 855
BseNI	ACTGG	2 cut(s)	29, 1615
BseRI	GAGGAG	2 cut(s)	77, 832
BseXI	GCAGC	1 cut(s)	1448
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	171, 1181
BshFI	GGCC	5 cut(s)	330, 654, 813, 1175, 1534
BsiSI	CCGG	2 cut(s)	183, 527
BslFI	GGGAC	1 cut(s)	1220
BslI	CCNNNNNNNGG	3 cut(s)	370, 650, 1204
BsmAI	GTCTC	2 cut(s)	98, 639
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	1220
BsnI	GGCC	5 cut(s)	330, 654, 813, 1175, 1534
Bsp1286I	GDGCHC	2 cut(s)	261, 1362
Bsp1407I	TGTACA	1 cut(s)	1410
Bsp143I	GATC	4 cut(s)	311, 418, 508, 1258
Bsp1720I	GCTNAGC	1 cut(s)	304
BspACI	CCGC	7 cut(s)	169, 371, 374, 1179, 1341, 1439, 1583
BspANI	GGCC	5 cut(s)	330, 654, 813, 1175, 1534
BspCNI	CTCAG	3 cut(s)	317, 807, 856
BspFNI	CGCG	2 cut(s)	171, 1181
BspLI	GGNNCC	3 cut(s)	286, 1359, 1443
BspPI	GGATC	3 cut(s)	319, 413, 1253
BsrDI	GCAATG	1 cut(s)	1577
BsrGI	TGTACA	1 cut(s)	1410
BsrI	ACTGG	2 cut(s)	29, 1615
BssECI	CCNNGG	1 cut(s)	957
BssMI	GATC	4 cut(s)	311, 418, 508, 1258
BssNAI	GTATAC	1 cut(s)	1306
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	957
Bst1107I	GTATAC	1 cut(s)	1306
Bst4CI	ACNGT	5 cut(s)	48, 344, 437, 1246, 1310
Bst6I	CTCTTC	1 cut(s)	1365
BstACI	GRCGYC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	1410
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	261, 1339
BstDEI	CTNAG	4 cut(s)	304, 815, 864, 1102
BstENI	CCTNNNNNAGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	957, 1590
BstFNI	CGCG	2 cut(s)	171, 1181
BstH2I	RGCGCY	2 cut(s)	108, 1668
BstHHI	GCGC	3 cut(s)	107, 649, 1667
BstKTI	GATC	4 cut(s)	314, 421, 511, 1261
BstMAI	GTCTC	2 cut(s)	98, 639
BstMBI	GATC	4 cut(s)	311, 418, 508, 1258
BstNSI	RCATGY	1 cut(s)	1341
BstSNI	TACGTA	1 cut(s)	296
BstUI	CGCG	2 cut(s)	171, 1181
BstV1I	GCAGC	1 cut(s)	1448
BstV2I	GAAGAC	2 cut(s)	120, 1635
BstX2I	RGATCY	4 cut(s)	311, 418, 508, 1258
BstYI	RGATCY	4 cut(s)	311, 418, 508, 1258
BstZ17I	GTATAC	1 cut(s)	1306
Bsu36I	CCTNAGG	1 cut(s)	815
BsuRI	GGCC	5 cut(s)	330, 654, 813, 1175, 1534
BtsCI	GGATG	2 cut(s)	957, 1590
BtsIMutI	CAGTG	2 cut(s)	44, 1251
Cac8I	GCNNGC	2 cut(s)	261, 1339
CfoI	GCGC	3 cut(s)	107, 649, 1667
Cfr13I	GGNCC	2 cut(s)	811, 1441
Csp6I	GTAC	6 cut(s)	345, 361, 798, 1411, 1509, 1632
CviAII	CATG	3 cut(s)	440, 1087, 1338
CviQI	GTAC	6 cut(s)	345, 361, 798, 1411, 1509, 1632
DdeI	CTNAG	4 cut(s)	304, 815, 864, 1102
DpnI	GATC	4 cut(s)	313, 420, 510, 1260
DpnII	GATC	4 cut(s)	311, 418, 508, 1258
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	1365
EarI	CTCTTC	1 cut(s)	1365
Eco105I	TACGTA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	957
Eco147I	AGGCCT	2 cut(s)	654, 1534
Eco24I	GRGCYC	2 cut(s)	261, 1362
Eco47I	GGWCC	1 cut(s)	1441
Eco47III	AGCGCT	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	898
Eco81I	CCTNAGG	1 cut(s)	815
EcoNI	CCTNNNNNAGG	1 cut(s)	648
EcoO109I	RGGNCCY	1 cut(s)	811
EcoT14I	CCWWGG	1 cut(s)	957
EcoT38I	GRGCYC	2 cut(s)	261, 1362
ErhI	CCWWGG	1 cut(s)	957
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	443, 1090, 1341
FalI	AAGNNNNNCTT	4 cut(s)	1085, 1117, 1627, 1659
FaqI	GGGAC	1 cut(s)	1220
FatI	CATG	3 cut(s)	439, 1086, 1337
FauI	CCCGC	1 cut(s)	1334
FblI	GTMKAC	1 cut(s)	1305
Fnu4HI	GCNGC	3 cut(s)	372, 1437, 1583
FokI	GGATG	2 cut(s)	964, 1577
FriOI	GRGCYC	2 cut(s)	261, 1362
Fsp4HI	GCNGC	3 cut(s)	372, 1437, 1583
FspBI	CTAG	9 cut(s)	110, 191, 272, 315, 506, 638, 650, 695, 1256
GlaI	GCGC	3 cut(s)	106, 648, 1666
GluI	GCNGC	3 cut(s)	372, 1437, 1583
GsaI	CCCAGC	1 cut(s)	426
HaeII	RGCGCY	2 cut(s)	108, 1668
HaeIII	GGCC	5 cut(s)	330, 654, 813, 1175, 1534
HapII	CCGG	2 cut(s)	183, 527
HhaI	GCGC	3 cut(s)	107, 649, 1667
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	3 cut(s)	443, 1090, 1341
Hin6I	GCGC	3 cut(s)	105, 647, 1665
HinP1I	GCGC	3 cut(s)	105, 647, 1665
HincII	GTYRAC	3 cut(s)	39, 340, 622
HindII	GTYRAC	3 cut(s)	39, 340, 622
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	7 cut(s)	116, 962, 999, 1024, 1375, 1552, 1640
HpaII	CCGG	2 cut(s)	183, 527
HphI	GGTGA	3 cut(s)	88, 469, 1670
Hpy166II	GTNNAC	7 cut(s)	39, 340, 622, 904, 1078, 1306, 1509
Hpy188III	TCNNGA	4 cut(s)	110, 394, 1003, 1166
Hpy8I	GTNNAC	7 cut(s)	39, 340, 622, 904, 1078, 1306, 1509
Hpy99I	CGWCG	4 cut(s)	80, 455, 562, 1055
HpyAV	CCTTC	6 cut(s)	169, 274, 970, 1087, 1412, 1545
HpyCH4III	ACNGT	5 cut(s)	48, 344, 437, 1246, 1310
HpyCH4IV	ACGT	3 cut(s)	126, 295, 453
HpyCH4V	TGCA	3 cut(s)	580, 771, 941
HpyF3I	CTNAG	4 cut(s)	304, 815, 864, 1102
HpySE526I	ACGT	3 cut(s)	126, 295, 453
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	443, 1090, 1341
HspAI	GCGC	3 cut(s)	105, 647, 1665
Kzo9I	GATC	4 cut(s)	311, 418, 508, 1258
LmnI	GCTCC	4 cut(s)	280, 1357, 1405, 1579
Lsp1109I	GCAGC	1 cut(s)	1448
LweI	GCATC	2 cut(s)	55, 1020
MaeI	CTAG	9 cut(s)	110, 191, 272, 315, 506, 638, 650, 695, 1256
MaeII	ACGT	3 cut(s)	126, 295, 453
MaeIII	GTNAC	2 cut(s)	296, 323
MalI	GATC	4 cut(s)	313, 420, 510, 1260
MboI	GATC	4 cut(s)	311, 418, 508, 1258
MboII	GAAGA	6 cut(s)	125, 259, 382, 597, 1382, 1635
MflI	RGATCY	4 cut(s)	311, 418, 508, 1258
MhlI	GDGCHC	2 cut(s)	261, 1362
MluCI	AATT	9 cut(s)	598, 856, 1038, 1137, 1158, 1169, 1363, 1425, 1669
MlyI	GAGTC	2 cut(s)	110, 1649
MmeI	TCCRAC	2 cut(s)	1219, 1671
MseI	TTAA	3 cut(s)	945, 1136, 1563
MspA1I	CMGCKG	1 cut(s)	1439
MspI	CCGG	2 cut(s)	183, 527
MvnI	CGCG	2 cut(s)	171, 1181
NdeII	GATC	4 cut(s)	311, 418, 508, 1258
NlaIII	CATG	3 cut(s)	443, 1090, 1341
NlaIV	GGNNCC	3 cut(s)	286, 1359, 1443
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	1341
PaeI	GCATGC	1 cut(s)	1341
PceI	AGGCCT	2 cut(s)	654, 1534
PfeI	GAWTC	5 cut(s)	962, 999, 1024, 1375, 1552
PkrI	GCNGC	3 cut(s)	373, 1438, 1584
PleI	GAGTC	2 cut(s)	110, 1648
PpsI	GAGTC	2 cut(s)	110, 1648
Ppu21I	YACGTR	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	3 cut(s)	286, 1359, 1443
PspPI	GGNCC	2 cut(s)	811, 1441
PsuI	RGATCY	4 cut(s)	311, 418, 508, 1258
RsaI	GTAC	6 cut(s)	346, 362, 799, 1412, 1510, 1633
RsaNI	GTAC	6 cut(s)	345, 361, 798, 1411, 1509, 1632
SaqAI	TTAA	3 cut(s)	945, 1136, 1563
SatI	GCNGC	3 cut(s)	372, 1437, 1583
Sau3AI	GATC	4 cut(s)	311, 418, 508, 1258
Sau96I	GGNCC	2 cut(s)	811, 1441
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	2 cut(s)	110, 1649
SduI	GDGCHC	2 cut(s)	261, 1362
SfaNI	GCATC	2 cut(s)	55, 1020
SinI	GGWCC	1 cut(s)	1441
SmlI	CTYRAG	2 cut(s)	994, 1164
SmoI	CTYRAG	2 cut(s)	994, 1164
SnaBI	TACGTA	1 cut(s)	296
SphI	GCATGC	1 cut(s)	1341
Sse9I	AATT	9 cut(s)	598, 856, 1038, 1137, 1158, 1169, 1363, 1425, 1669
SseBI	AGGCCT	2 cut(s)	654, 1534
SsiI	CCGC	7 cut(s)	169, 371, 374, 1179, 1341, 1439, 1583
SspMI	CTAG	9 cut(s)	110, 191, 272, 315, 506, 638, 650, 695, 1256
StuI	AGGCCT	2 cut(s)	654, 1534
StyI	CCWWGG	1 cut(s)	957
TaaI	ACNGT	5 cut(s)	48, 344, 437, 1246, 1310
TaiI	ACGT	3 cut(s)	129, 298, 456
TaqI	TCGA	4 cut(s)	75, 139, 450, 557
TasI	AATT	9 cut(s)	598, 856, 1038, 1137, 1158, 1169, 1363, 1425, 1669
TatI	WGTACW	4 cut(s)	797, 1410, 1508, 1631
TauI	GCSGC	2 cut(s)	374, 1585
TfiI	GAWTC	5 cut(s)	962, 999, 1024, 1375, 1552
Tru1I	TTAA	3 cut(s)	945, 1136, 1563
Tru9I	TTAA	3 cut(s)	945, 1136, 1563
TscAI	CASTG	2 cut(s)	51, 1251
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	1436
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	1075
TspGWI	ACGGA	4 cut(s)	80, 264, 460, 1370
TspRI	CASTG	2 cut(s)	51, 1251
VpaK11BI	GGWCC	1 cut(s)	1441
XagI	CCTNNNNNAGG	1 cut(s)	648
XapI	RAATTY	2 cut(s)	598, 856
XbaI	TCTAGA	1 cut(s)	109
XceI	RCATGY	1 cut(s)	1341
XmiI	GTMKAC	1 cut(s)	1305
XspI	CTAG	9 cut(s)	110, 191, 272, 315, 506, 638, 650, 695, 1256
ZraI	GACGTC	1 cut(s)	454
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.