Rmu_ssc0000100.1_g000001

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000100.1
Physical Location & Seq
Forward (+)
1 .. 2160
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000100.1_g000001.1.cds

Sequence Viewer

Length: 1744 bp
tcaagttgatttggggctgtgttcaataactgccgtcccatccctcattactgatgcgtattttgcgcctgtctcttttctattcactttttttcttgttttcttgagctccgcatgcaagtcttttgtcgctgggctagggcatccagttgacagcgaggtttctaccttgattatagcacttcccagtaccctttcaaatgagtacccctatgtggcggtggagtttgacatcttccagagtgaaaatacagccatcggagatcccagctacccatacggtcatgtgggtatcgacgtcagctctctcaaatccgttatcacaaagccttggtatgtaagtatgaaggaaggacagcaaagtaatagtgccaagattacttatagttctggcacaaaaaatctaagcgtggccttcaccacttatgatgatctgagtggtatccaagtaatcagttatttttcttacgaactagatctgaaaaaatacttgccggattgggttattgttgggttctcggcttcgacggggaggtctattactctgcataacatcatctcttggaatttttcttcaacttcgcttgttgactatgatttgtctctagttcctgcgccaggccttacttctaaagtcaagcccagaaaggacaataaacatctagttcttgttattggtgttgttgttggggggtttatgctggttggtgtgttaggtttgggtttgttcaactcttgcaagagaaaggcaacaggagaaagtagtattgaaatagagggcctgaggaggttttcttatggagaaatagctttggcgacgagaaattttgccgagggagaaaagcttggagagggagtagatggtgtggtttacaaaggcttcagatatgacttgaactcgtatgttacagttaagaagatgtccaagggatctacacaaatgaaggagtataaatcagacttgagaatcctgagtaaactacatcatcggaatctgatgcgactaattggttggtgcgacgaacaaggagaactaatacttgtttacgagttcatgccgaagggaagcttagatatccatttactcaaagtagacaacttgttgatttgggaggtcagatataaaattgctcaagatttggcctccgcgttgctatatctacacgaatattcaggggtaccatgtgttcataggaatatccaacctagcagtattatgttggattcgaatttggaagcaaaacttggaaattttctgtttactgaacttgtgcatgaagaatcacaaactacacttgtggttggaacagtgggctacctagatccagcatatttaatgacaggaaagacgagcaagatgtcagatgtttacagttttggtgttgttgctttggagatagcatgcgggagaaaacctacggagcccaattttgaagagaatcaaatctatttggtggaatgggtttgggagctgtacagagaagggaaaattattgaagcagcggacccaaaactgcgtggagattttgataagaaacaaatggagtgcttgatggttgttgggttgtggtgtgctcactctgactttcgtttcaggccttcaataggcgaggcgattcaagttcttaactttgaagctccattgccgcttctcatcctgtcaaatgacactacaggttcaagttctgaaagaagtacaagtgagtcttccaacatcgatggtggtaacgccaattcctcgtag

Protein Analysis

580

Amino Acids

64.2

Weight (kDa)

5.37

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019018)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
AatII GACGTC 1 cut(s) 301
Acc65I GGTACC 1 cut(s) 1178
AccB1I GGYRCC 1 cut(s) 1178
AccI GTMKAC 1 cut(s) 1093
AccII CGCG 1 cut(s) 1149
AciI CCGC 6 cut(s) 112, 219, 1147, 1405, 1503, 1647
AclWI GGATC 3 cut(s) 258, 938, 1317
AcsI RAATTY 4 cut(s) 566, 824, 1229, 1250
AcuI CTGAAG 1 cut(s) 866
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 5 cut(s) 191, 207, 1180, 1476, 1697
AfiI CCNNNNNNNGG 3 cut(s) 215, 618, 1605
AjnI CCWGG 1 cut(s) 617
AjuI GAANNNNNNNTTGG 2 cut(s) 1228, 1260
AluBI AGCT 8 cut(s) 109, 271, 304, 810, 845, 1069, 1472, 1638
AluI AGCT 8 cut(s) 109, 271, 304, 810, 845, 1069, 1472, 1638
Alw21I GWGCWC 2 cut(s) 111, 1577
Alw26I GTCTC 2 cut(s) 77, 607
AlwI GGATC 3 cut(s) 258, 938, 1317
AoxI GGCC 5 cut(s) 412, 620, 779, 1141, 1596
ApeKI GCWGC 1 cut(s) 1500
ApoI RAATTY 4 cut(s) 566, 824, 1229, 1250
Asp718I GGTACC 1 cut(s) 1178
AspLEI GCGC 2 cut(s) 68, 617
AspS9I GGNCC 2 cut(s) 779, 1505
AsuHPI GGTGA 1 cut(s) 410
AsuII TTCGAA 1 cut(s) 1227
AvaII GGWCC 1 cut(s) 1505
AxyI CCTNAGG 1 cut(s) 783
BanI GGYRCC 1 cut(s) 1178
BanII GRGCYC 2 cut(s) 111, 1426
BbsI GAAGAC 1 cut(s) 1699
Bbv12I GWGCWC 2 cut(s) 111, 1577
BbvI GCAGC 1 cut(s) 1512
BccI CCATC 5 cut(s) 47, 264, 855, 1547, 1713
BceAI ACGGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 619
BciVI GTATCC 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 77, 607
BfaI CTAG 6 cut(s) 138, 474, 606, 663, 1207, 1320
BfmI CTRYAG 1 cut(s) 1672
BfuI GTATCC 1 cut(s) 453
BglII AGATCT 1 cut(s) 476
BisI GCNGC 2 cut(s) 1501, 1647
BlsI GCNGC 2 cut(s) 1502, 1648
Bme1390I CCNGG 1 cut(s) 619
Bme18I GGWCC 1 cut(s) 1505
BmgT120I GGNCC 2 cut(s) 779, 1505
BmiI GGNNCC 3 cut(s) 1180, 1423, 1507
BmrFI CCNGG 1 cut(s) 619
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 3 cut(s) 44, 152, 988
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 1699
Bpu14I TTCGAA 1 cut(s) 1227
BpuEI CTTGAG 3 cut(s) 125, 983, 1117
Bsa29I ATCGAT 1 cut(s) 1717
BsaHI GRCGYC 1 cut(s) 298
BsaJI CCNNGG 3 cut(s) 330, 832, 925
BsaXI ACNNNNNCTCC 2 cut(s) 841, 871
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 618, 1605
Bse1I ACTGG 2 cut(s) 147, 187
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 1641
BseBI CCWGG 1 cut(s) 619
BseCI ATCGAT 1 cut(s) 1717
BseDI CCNNGG 3 cut(s) 330, 832, 925
BseGI GGATG 3 cut(s) 39, 143, 1654
BseLI CCNNNNNNNGG 3 cut(s) 215, 618, 1605
BseMI GCAATG 1 cut(s) 1641
BseMII CTCAG 3 cut(s) 426, 774, 963
BseNI ACTGG 2 cut(s) 147, 187
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 1 cut(s) 1512
BseYI CCCAGC 2 cut(s) 132, 267
Bsh1236I CGCG 1 cut(s) 1149
BshFI GGCC 5 cut(s) 414, 622, 781, 1143, 1598
BshNI GGYRCC 1 cut(s) 1178
BshVI ATCGAT 1 cut(s) 1717
BsiHKAI GWGCWC 2 cut(s) 111, 1577
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 3 cut(s) 215, 618, 1605
BsmAI GTCTC 2 cut(s) 77, 607
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 5 cut(s) 414, 622, 781, 1143, 1598
Bsp119I TTCGAA 1 cut(s) 1227
Bsp1286I GDGCHC 3 cut(s) 111, 1426, 1577
Bsp1407I TGTACA 1 cut(s) 1474
Bsp143I GATC 5 cut(s) 263, 431, 476, 930, 1322
BspACI CCGC 6 cut(s) 112, 219, 1147, 1405, 1503, 1647
BspANI GGCC 5 cut(s) 414, 622, 781, 1143, 1598
BspCNI CTCAG 3 cut(s) 427, 775, 964
BspDI ATCGAT 1 cut(s) 1717
BspFNI CGCG 1 cut(s) 1149
BspLI GGNNCC 3 cut(s) 1180, 1423, 1507
BspPI GGATC 3 cut(s) 258, 938, 1317
BspT104I TTCGAA 1 cut(s) 1227
BspT107I GGYRCC 1 cut(s) 1178
BsrDI GCAATG 1 cut(s) 1641
BsrGI TGTACA 1 cut(s) 1474
BsrI ACTGG 2 cut(s) 147, 187
BssECI CCNNGG 3 cut(s) 330, 832, 925
BssMI GATC 5 cut(s) 263, 431, 476, 930, 1322
BssNI GRCGYC 1 cut(s) 298
BssT1I CCWWGG 2 cut(s) 330, 925
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 4 cut(s) 282, 911, 1310, 1374
Bst6I CTCTTC 1 cut(s) 1429
BstACI GRCGYC 1 cut(s) 298
BstAUI TGTACA 1 cut(s) 1474
BstBI TTCGAA 1 cut(s) 1227
BstC8I GCNNGC 2 cut(s) 116, 1403
BstDEI CTNAG 5 cut(s) 405, 435, 783, 972, 1070
BstENI CCTNNNNNAGG 2 cut(s) 616, 1603
BstF5I GGATG 3 cut(s) 39, 143, 1654
BstFNI CGCG 1 cut(s) 1149
BstHHI GCGC 2 cut(s) 68, 617
BstKTI GATC 5 cut(s) 266, 434, 479, 933, 1325
BstMAI GTCTC 2 cut(s) 77, 607
BstMBI GATC 5 cut(s) 263, 431, 476, 930, 1322
BstMWI GCNNNNNNNGC 2 cut(s) 63, 115
BstNI CCWGG 1 cut(s) 619
BstNSI RCATGY 2 cut(s) 118, 1405
BstSCI CCNGG 1 cut(s) 617
BstSFI CTRYAG 1 cut(s) 1672
BstUI CGCG 1 cut(s) 1149
BstV1I GCAGC 1 cut(s) 1512
BstV2I GAAGAC 1 cut(s) 1699
BstX2I RGATCY 4 cut(s) 263, 476, 930, 1322
BstYI RGATCY 4 cut(s) 263, 476, 930, 1322
Bsu15I ATCGAT 1 cut(s) 1717
Bsu36I CCTNAGG 1 cut(s) 783
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 5 cut(s) 414, 622, 781, 1143, 1598
BsuTUI ATCGAT 1 cut(s) 1717
BtsCI GGATG 3 cut(s) 39, 143, 1654
BtsIMutI CAGTG 1 cut(s) 1315
Cac8I GCNNGC 2 cut(s) 116, 1403
CfoI GCGC 2 cut(s) 68, 617
Cfr13I GGNCC 2 cut(s) 779, 1505
ClaI ATCGAT 1 cut(s) 1717
Csp6I GTAC 5 cut(s) 190, 206, 1179, 1475, 1696
CviAII CATG 6 cut(s) 115, 285, 1055, 1183, 1275, 1402
CviQI GTAC 5 cut(s) 190, 206, 1179, 1475, 1696
DdeI CTNAG 5 cut(s) 405, 435, 783, 972, 1070
DpnI GATC 5 cut(s) 265, 433, 478, 932, 1324
DpnII GATC 5 cut(s) 263, 431, 476, 930, 1322
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 1429
EarI CTCTTC 1 cut(s) 1429
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 330, 925
Eco147I AGGCCT 2 cut(s) 622, 1598
Eco24I GRGCYC 2 cut(s) 111, 1426
Eco32I GATATC 1 cut(s) 1076
Eco47I GGWCC 1 cut(s) 1505
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 866
Eco81I CCTNAGG 1 cut(s) 783
EcoICRI GAGCTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 2 cut(s) 616, 1603
EcoO109I RGGNCCY 1 cut(s) 779
EcoRII CCWGG 1 cut(s) 617
EcoRV GATATC 1 cut(s) 1076
EcoT14I CCWWGG 2 cut(s) 330, 925
EcoT38I GRGCYC 2 cut(s) 111, 1426
ErhI CCWWGG 2 cut(s) 330, 925
FaeI CATG 6 cut(s) 118, 288, 1058, 1186, 1278, 1405
FalI AAGNNNNNCTT 6 cut(s) 1053, 1085, 1228, 1260, 1691, 1723
FaqI GGGAC 1 cut(s) 21
FatI CATG 6 cut(s) 114, 284, 1054, 1182, 1274, 1401
FauI CCCGC 1 cut(s) 1398
FblI GTMKAC 1 cut(s) 1093
Fnu4HI GCNGC 2 cut(s) 1501, 1647
FokI GGATG 3 cut(s) 26, 130, 1641
FriOI GRGCYC 2 cut(s) 111, 1426
Fsp4HI GCNGC 2 cut(s) 1501, 1647
FspBI CTAG 6 cut(s) 138, 474, 606, 663, 1207, 1320
GlaI GCGC 2 cut(s) 67, 616
GluI GCNGC 2 cut(s) 1501, 1647
GsaI CCCAGC 2 cut(s) 136, 271
HaeIII GGCC 5 cut(s) 414, 622, 781, 1143, 1598
HapII CCGG 1 cut(s) 495
HhaI GCGC 2 cut(s) 68, 617
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 6 cut(s) 118, 288, 1058, 1186, 1278, 1405
Hin6I GCGC 2 cut(s) 66, 615
HinP1I GCGC 2 cut(s) 66, 615
HincII GTYRAC 2 cut(s) 152, 590
HindII GTYRAC 2 cut(s) 152, 590
HindIII AAGCTT 2 cut(s) 843, 1067
HinfI GANTC 7 cut(s) 967, 992, 1224, 1281, 1439, 1616, 1704
HpaII CCGG 1 cut(s) 495
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 8 cut(s) 152, 590, 872, 978, 1046, 1094, 1261, 1370
Hpy188III TCNNGA 4 cut(s) 104, 239, 971, 1134
Hpy8I GTNNAC 8 cut(s) 152, 590, 872, 978, 1046, 1094, 1261, 1370
Hpy99I CGWCG 4 cut(s) 300, 530, 821, 1023
HpyAV CCTTC 7 cut(s) 341, 345, 425, 938, 1055, 1476, 1609
HpyCH4III ACNGT 4 cut(s) 282, 911, 1310, 1374
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 118, 548, 739, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 115
HpyF3I CTNAG 5 cut(s) 405, 435, 783, 972, 1070
HpySE526I ACGT 1 cut(s) 298
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 6 cut(s) 118, 288, 1058, 1186, 1278, 1405
HspAI GCGC 2 cut(s) 66, 615
KpnI GGTACC 1 cut(s) 1182
Kzo9I GATC 5 cut(s) 263, 431, 476, 930, 1322
LmnI GCTCC 4 cut(s) 114, 1421, 1469, 1643
Lsp1109I GCAGC 1 cut(s) 1512
LweI GCATC 3 cut(s) 44, 152, 988
MaeI CTAG 6 cut(s) 138, 474, 606, 663, 1207, 1320
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 905, 1725
MalI GATC 5 cut(s) 265, 433, 478, 932, 1324
MboI GATC 5 cut(s) 263, 431, 476, 930, 1322
MboII GAAGA 6 cut(s) 227, 565, 929, 1290, 1446, 1699
MflI RGATCY 4 cut(s) 263, 476, 930, 1322
MhlI GDGCHC 3 cut(s) 111, 1426, 1577
MluCI AATT 9 cut(s) 566, 824, 1006, 1126, 1229, 1250, 1427, 1489, 1733
MlyI GAGTC 1 cut(s) 1713
MmeI TCCRAC 4 cut(s) 1201, 1226, 1283, 1735
MseI TTAA 3 cut(s) 913, 1335, 1627
MspA1I CMGCKG 1 cut(s) 1503
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 619
MvaI CCWGG 1 cut(s) 619
MvnI CGCG 1 cut(s) 1149
MwoI GCNNNNNNNGC 2 cut(s) 63, 115
NdeII GATC 5 cut(s) 263, 431, 476, 930, 1322
NlaIII CATG 6 cut(s) 118, 288, 1058, 1186, 1278, 1405
NlaIV GGNNCC 3 cut(s) 1180, 1423, 1507
NmeAIII GCCGAG 2 cut(s) 498, 857
NspI RCATGY 2 cut(s) 118, 1405
NspV TTCGAA 1 cut(s) 1227
PaeI GCATGC 2 cut(s) 118, 1405
PceI AGGCCT 2 cut(s) 622, 1598
PfeI GAWTC 6 cut(s) 967, 992, 1224, 1281, 1439, 1616
PkrI GCNGC 2 cut(s) 1502, 1648
PleI GAGTC 1 cut(s) 1712
PpsI GAGTC 1 cut(s) 1712
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 617
PspFI CCCAGC 2 cut(s) 132, 267
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 3 cut(s) 1180, 1423, 1507
PspPI GGNCC 2 cut(s) 779, 1505
PsrI GAACNNNNNNTAC 2 cut(s) 1171, 1203
PsuI RGATCY 4 cut(s) 263, 476, 930, 1322
RsaI GTAC 5 cut(s) 191, 207, 1180, 1476, 1697
RsaNI GTAC 5 cut(s) 190, 206, 1179, 1475, 1696
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 913, 1335, 1627
SatI GCNGC 2 cut(s) 1501, 1647
Sau3AI GATC 5 cut(s) 263, 431, 476, 930, 1322
Sau96I GGNCC 2 cut(s) 779, 1505
SchI GAGTC 1 cut(s) 1713
ScrFI CCNGG 1 cut(s) 619
SduI GDGCHC 3 cut(s) 111, 1426, 1577
SfaNI GCATC 3 cut(s) 44, 152, 988
SfcI CTRYAG 1 cut(s) 1672
SfuI TTCGAA 1 cut(s) 1227
SinI GGWCC 1 cut(s) 1505
SmlI CTYRAG 3 cut(s) 104, 962, 1132
SmoI CTYRAG 3 cut(s) 104, 962, 1132
SphI GCATGC 2 cut(s) 118, 1405
Sse9I AATT 9 cut(s) 566, 824, 1006, 1126, 1229, 1250, 1427, 1489, 1733
SseBI AGGCCT 2 cut(s) 622, 1598
SsiI CCGC 6 cut(s) 112, 219, 1147, 1405, 1503, 1647
SspI AATATT 1 cut(s) 1170
SspMI CTAG 6 cut(s) 138, 474, 606, 663, 1207, 1320
SstI GAGCTC 1 cut(s) 111
StuI AGGCCT 2 cut(s) 622, 1598
StyD4I CCNGG 1 cut(s) 617
StyI CCWWGG 2 cut(s) 330, 925
TaaI ACNGT 4 cut(s) 282, 911, 1310, 1374
TaiI ACGT 1 cut(s) 301
TaqI TCGA 4 cut(s) 295, 525, 1227, 1717
TasI AATT 9 cut(s) 566, 824, 1006, 1126, 1229, 1250, 1427, 1489, 1733
TatI WGTACW 2 cut(s) 1474, 1695
TauI GCSGC 1 cut(s) 1649
TfiI GAWTC 6 cut(s) 967, 992, 1224, 1281, 1439, 1616
Tru1I TTAA 3 cut(s) 913, 1335, 1627
Tru9I TTAA 3 cut(s) 913, 1335, 1627
TscAI CASTG 1 cut(s) 1315
TseI GCWGC 1 cut(s) 1500
TspDTI ATGAA 5 cut(s) 360, 957, 1043, 1179, 1291
TspGWI ACGGA 2 cut(s) 305, 1434
TspRI CASTG 1 cut(s) 1315
VpaK11BI GGWCC 1 cut(s) 1505
XagI CCTNNNNNAGG 2 cut(s) 616, 1603
XapI RAATTY 4 cut(s) 566, 824, 1229, 1250
XceI RCATGY 2 cut(s) 118, 1405
XmiI GTMKAC 1 cut(s) 1093
XspI CTAG 6 cut(s) 138, 474, 606, 663, 1207, 1320
ZraI GACGTC 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.