Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004101.1

Orthogroup ID

OG0018370

Physical Location & Seq

Genomic Coordinates Reverse (-)

261446 .. 262478

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggttattctattcaagaactctgagggaaagaccttcgaggtcgcagagtctacatcacttgccccccagacaatcaagaacatgatggaggatcccaacagccccgagattagtatccctcatgtgagaactgcagtcatgctcaaggtgatcgaatacctcaccatgcacgacgagggcaacaattcccgaacaaccctccagaactttggtgactacttcctcgaaaaagttgacaagaccactcttgatctcatcaaggcagcaaaccttctgataattagggcaaatctcaagcctaaggagacattggataaagtgttggattgggcgaggcaacaaagcaatggcagcgctcttccacaattatcatatttacgtggaggaatatggctttctgcggcccttgcatcccagaccatcaagcatatgattgaggatcttgaggatcccatccatgagattactttcctggatatgacaagcgtaatccttgccaaggtgatcgattacctcaacatgcacgagaagcgaaacgcatgtgtcggcactaaggctgttcacaactttgatgccgagttcgtcaaggttgacaagaaacactttttgacctcatcaaggcagcaaactttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

212

Amino Acids

24.02

Weight (kDa)

6.16

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	2 - 59	1.7e-09	Skp1 family, tetramerisation domain
Skp1_POZ	PF03931	135 - 177	1.5e-08	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05250 FvH4_5g29420
rosa_multiflora	Rmu_sc0004101.1_g000052 Rmu_sc0006045.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007680 Rroxscaffold_1G00023770
rosa_samantha	Rh5BG502900 Rh5CG526000 Rh5DG395400 Rh5DG395500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	5 cut(s)	89, 102, 446, 450, 459
AfeI	AGCGCT	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	502, 621
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	5 cut(s)	89, 102, 446, 450, 459
Ama87I	CYCGRG	1 cut(s)	107
Aor51HI	AGCGCT	1 cut(s)	358
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	266, 354, 625
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	4 cut(s)	157, 163, 227, 517
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	303
BamHI	GGATCC	2 cut(s)	94, 451
BauI	CACGAG	1 cut(s)	527
BbvI	GCAGC	2 cut(s)	278, 366
BccI	CCATC	3 cut(s)	82, 431, 464
BciT130I	CCWGG	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	360
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	4 cut(s)	267, 355, 405, 626
BlsI	GCNGC	4 cut(s)	268, 356, 406, 627
Bme1390I	CCNGG	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	96, 453
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	422, 565
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	3 cut(s)	131, 281, 467
Bsa29I	ATCGAT	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 621
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	476
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	413, 456
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	502, 621
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	278, 366
BshFI	GGCC	1 cut(s)	407
BshVI	ATCGAT	1 cut(s)	510
BsiHKCI	CYCGRG	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	502, 621
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	16
BspDI	ATCGAT	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	96, 453
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	5 cut(s)	89, 102, 446, 450, 459
BspQI	GCTCTTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	24, 303, 555
BstENI	CCTNNNNNAGG	2 cut(s)	500, 619
BstF5I	GGATG	2 cut(s)	413, 456
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	6 cut(s)	97, 156, 256, 445, 454, 510
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
BstMWI	GCNNNNNNNGC	3 cut(s)	354, 410, 532
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	2 cut(s)	526, 546
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	278, 366
BstX2I	RGATCY	3 cut(s)	94, 442, 451
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	3 cut(s)	94, 442, 451
Bsu15I	ATCGAT	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	407
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	413, 456
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	510
CviAII	CATG	7 cut(s)	85, 125, 142, 169, 461, 523, 543
CviJI	RGCY	5 cut(s)	105, 301, 397, 407, 560
CviKI_1	RGCY	5 cut(s)	105, 301, 397, 407, 560
DdeI	CTNAG	3 cut(s)	24, 303, 555
DpnI	GATC	6 cut(s)	96, 155, 255, 444, 453, 509
DpnII	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	501
Eco47III	AGCGCT	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	2 cut(s)	500, 619
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	7 cut(s)	88, 128, 145, 172, 464, 526, 546
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FatI	CATG	7 cut(s)	84, 124, 141, 168, 460, 522, 542
FauNDI	CATATG	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	4 cut(s)	267, 355, 405, 626
FokI	GGATG	2 cut(s)	400, 443
Fsp4HI	GCNGC	4 cut(s)	267, 355, 405, 626
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	4 cut(s)	267, 355, 405, 626
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	407
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	7 cut(s)	88, 128, 145, 172, 464, 526, 546
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	2 cut(s)	238, 595
HindII	GTYRAC	2 cut(s)	238, 595
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	4 cut(s)	157, 163, 227, 517
Hpy166II	GTNNAC	4 cut(s)	54, 238, 565, 595
Hpy188I	TCNGA	2 cut(s)	25, 279
Hpy188III	TCNNGA	6 cut(s)	16, 79, 192, 205, 251, 446
Hpy8I	GTNNAC	4 cut(s)	54, 238, 565, 595
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	46, 284
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	137, 172, 413, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	354, 410, 532
HpyF3I	CTNAG	3 cut(s)	24, 303, 555
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	7 cut(s)	88, 128, 145, 172, 464, 526, 546
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
LguI	GCTCTTC	1 cut(s)	366
LpnPI	CCDG	5 cut(s)	83, 218, 431, 461, 488
Lsp1109I	GCAGC	2 cut(s)	278, 366
LweI	GCATC	2 cut(s)	422, 565
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	6 cut(s)	96, 155, 255, 444, 453, 509
MboI	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	3 cut(s)	94, 442, 451
MluCI	AATT	3 cut(s)	187, 282, 368
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	354, 410, 532
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
NlaIII	CATG	7 cut(s)	88, 128, 145, 172, 464, 526, 546
NlaIV	GGNNCC	2 cut(s)	96, 453
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	2 cut(s)	526, 546
PciSI	GCTCTTC	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	268, 356, 406, 627
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	96, 453
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	3 cut(s)	94, 442, 451
SapI	GCTCTTC	1 cut(s)	366
SatI	GCNGC	4 cut(s)	267, 355, 405, 626
Sau3AI	GATC	6 cut(s)	94, 153, 253, 442, 451, 507
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	476
SfaNI	GCATC	2 cut(s)	422, 565
SfcI	CTRYAG	1 cut(s)	135
SmlI	CTYRAG	3 cut(s)	146, 296, 446
SmoI	CTYRAG	3 cut(s)	146, 296, 446
Sse9I	AATT	3 cut(s)	187, 282, 368
SsiI	CCGC	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	501
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	39, 156, 228, 510
TasI	AATT	3 cut(s)	187, 282, 368
TauI	GCSGC	1 cut(s)	407
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	3 cut(s)	266, 354, 625
Tsp45I	GTSAC	1 cut(s)	215
XagI	CCTNNNNNAGG	2 cut(s)	500, 619
XceI	RCATGY	2 cut(s)	526, 546
XmiI	GTMKAC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.