Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004191.1

Orthogroup ID

OG0019764

Physical Location & Seq

Genomic Coordinates Forward (+)

136762 .. 138014

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggccggaaagccaccagaacgcctccacaggcggtggtgcaccgccgcaggccaaaactcaatatttcacaaaactcccaacatcaaaaaatttcatctaggcatgcttatctactcagacgacccccacgaagccaaggaaggaaacttgaagccgtacggtcgccggagctacgttttccggtcgggtcctaaaacactaacctgctccgccttgctgggccgcacacggtggatatcaccgctagagaacaccacatggacgatcagacggaggaggcgaactgatctggaagttttcaccgccggagatcgctggaaaagcctggtcgggtcgggtcagaaggaaaactttgataccgaaggaagaatgggaagcaacgatgagctgaagtcgaaggtgctggagcagatgaaacagcagctcaccactgacgccggtaaaatcatcgttaagaagattggtcttgtttatcagatcaaaatcgcacccaagaaaattgggttcaatgaggtggcttacaccattgatatgaggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

181

Amino Acids

20.78

Weight (kDa)

10.14

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019764)

Species	Orthologous Gene IDs
malus_domestica	MD09G1158900.v1.1
rosa_multiflora	Rmu_sc0004191.1_g000034 Rmu_sc0009428.1_g000013 Rmu_sc0009445.1_g000005 Rmu_sc0029652.1_g000001
rosa_samantha	Rh2BG490300 Rh2CG463900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
AciI	CCGC	7 cut(s)	34, 45, 48, 213, 226, 245, 306
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	154, 511
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	3 cut(s)	174, 391, 427
AluI	AGCT	3 cut(s)	174, 391, 427
Alw21I	GWGCWC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	40
AoxI	GGCC	3 cut(s)	3, 52, 223
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	191, 223
AsuHPI	GGTGA	3 cut(s)	234, 295, 421
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	436
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	101, 248
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	3 cut(s)	48, 226, 425
BlsI	GCNGC	3 cut(s)	49, 227, 426
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 223
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	220
Bsh1285I	CGRYCG	2 cut(s)	166, 188
BshFI	GGCC	3 cut(s)	5, 54, 225
BsiEI	CGRYCG	2 cut(s)	166, 188
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	5 cut(s)	6, 169, 184, 309, 441
BsiWI	CGTACG	1 cut(s)	159
BsnI	GGCC	3 cut(s)	5, 54, 225
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	4 cut(s)	267, 289, 313, 480
BspACI	CCGC	7 cut(s)	34, 45, 48, 213, 226, 245, 306
BspANI	GGCC	3 cut(s)	5, 54, 225
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	267, 289, 313, 480
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	164, 234
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	52, 107
BstDEI	CTNAG	1 cut(s)	118
BstKTI	GATC	4 cut(s)	270, 292, 316, 483
BstMBI	GATC	4 cut(s)	267, 289, 313, 480
BstMCI	CGRYCG	2 cut(s)	166, 188
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	5, 54, 225
BtsIMutI	CAGTG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	52, 107
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	191, 223
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	2 cut(s)	106, 261
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	4 cut(s)	269, 291, 315, 482
DpnII	GATC	4 cut(s)	267, 289, 313, 480
DraIII	CACNNNGTG	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	109, 264
FaiI	YATR	3 cut(s)	107, 262, 536
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	2 cut(s)	105, 260
Fnu4HI	GCNGC	3 cut(s)	48, 226, 425
Fsp4HI	GCNGC	3 cut(s)	48, 226, 425
FspBI	CTAG	2 cut(s)	101, 248
GluI	GCNGC	3 cut(s)	48, 226, 425
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	3 cut(s)	5, 54, 225
HapII	CCGG	5 cut(s)	6, 169, 184, 309, 441
HgaI	GACGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	2 cut(s)	109, 264
HpaII	CCGG	5 cut(s)	6, 169, 184, 309, 441
HphI	GGTGA	3 cut(s)	234, 295, 421
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	121, 272, 345, 480
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	4 cut(s)	137, 340, 359, 394
HpyCH4III	ACNGT	2 cut(s)	164, 234
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	2 cut(s)	109, 264
Kzo9I	GATC	4 cut(s)	267, 289, 313, 480
LmnI	GCTCC	3 cut(s)	171, 215, 409
Lsp1109I	GCAGC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	101, 248
MaeII	ACGT	1 cut(s)	177
MalI	GATC	4 cut(s)	269, 291, 315, 482
MboI	GATC	4 cut(s)	267, 289, 313, 480
MboII	GAAGA	2 cut(s)	381, 472
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	2 cut(s)	92, 501
MnlI	CCTC	5 cut(s)	35, 270, 273, 508, 531
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	5 cut(s)	6, 169, 184, 309, 441
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	4 cut(s)	267, 289, 313, 480
NlaIII	CATG	2 cut(s)	109, 264
NlaIV	GGNNCC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 280
Pfl23II	CGTACG	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	49, 227, 426
PpuMI	RGGWCCY	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	327
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	191, 223
PspPPI	RGGWCCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	3 cut(s)	48, 226, 425
Sau3AI	GATC	4 cut(s)	267, 289, 313, 480
Sau96I	GGNCC	2 cut(s)	191, 223
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	7 cut(s)	176, 180, 209, 393, 405, 429, 519
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	2 cut(s)	92, 501
SsiI	CCGC	7 cut(s)	34, 45, 48, 213, 226, 245, 306
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	2 cut(s)	101, 248
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	164, 234
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	92, 501
TauI	GCSGC	2 cut(s)	50, 228
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	86, 431
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	439
VneI	GTGCAC	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	2 cut(s)	101, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.