Rmu_sc0029652.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029652.1
OG0019764
Physical Location & Seq
Forward (+)
1 .. 1316
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029652.1_g000001.1.cds

Sequence Viewer

Length: 288 bp
ccccaccgacgtcggagatctgagaaccgatcgggtccgaaaacactcaactgtgtcgccttctactgccgccaccaccgaaaatcggtgctagaggacaccacagggacgactagacggaggagacgatcctatctggaaagttttgtcgccgcagttcgtccgaaaagccgggtcgggtcggccgagtccgagtcgggtcagtcgaaaaactcagatactgaaggtgcagtcgagagagaagagagagagaagaaagctttccggaaaaggaaagtgaaattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.07

Weight (kDa)

11.07

Isoelectric Point (pI)

91.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019764)

Species Orthologous Gene IDs
malus_domestica MD09G1158900.v1.1
rosa_multiflora Rmu_sc0004191.1_g000034 Rmu_sc0009428.1_g000013 Rmu_sc0009445.1_g000005 Rmu_sc0029652.1_g000001
rosa_samantha Rh2BG490300 Rh2CG463900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 13
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 2 cut(s) 70, 153
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 264
AoxI GGCC 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 2 cut(s) 92, 114
BglII AGATCT 1 cut(s) 17
BisI GCNGC 2 cut(s) 70, 153
BlsI GCNGC 2 cut(s) 71, 154
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseAI TCCGGA 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 2 cut(s) 12, 228
BseRI GAGGAG 1 cut(s) 136
BseX3I CGGCCG 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 249
Bsh1285I CGRYCG 2 cut(s) 32, 186
BshFI GGCC 1 cut(s) 185
BsiEI CGRYCG 2 cut(s) 32, 186
BsiSI CCGG 2 cut(s) 172, 265
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 264
Bsp143I GATC 3 cut(s) 17, 29, 128
BspACI CCGC 2 cut(s) 70, 153
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 13, 227
BspEI TCCGGA 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 123
BssMI GATC 3 cut(s) 17, 29, 128
BssNI GRCGYC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 21, 214
BstKTI GATC 3 cut(s) 20, 32, 131
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 17, 29, 128
BstMCI CGRYCG 2 cut(s) 32, 186
BstSCI CCNGG 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 35
CviJI RGCY 3 cut(s) 171, 185, 260
CviKI_1 RGCY 3 cut(s) 171, 185, 260
DdeI CTNAG 2 cut(s) 21, 214
DpnI GATC 3 cut(s) 19, 31, 130
DpnII GATC 3 cut(s) 17, 29, 128
EaeI YGGCCR 1 cut(s) 183
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EclXI CGGCCG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 118
FaiI YATR 1 cut(s) 286
FaqI GGGAC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 70, 153
Fsp4HI GCNGC 2 cut(s) 70, 153
FspBI CTAG 2 cut(s) 92, 114
GluI GCNGC 2 cut(s) 70, 153
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 172, 265
Hin1I GRCGYC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 2 cut(s) 188, 194
HpaII CCGG 2 cut(s) 172, 265
Hpy188I TCNGA 6 cut(s) 15, 22, 39, 165, 193, 217
Hpy188III TCNNGA 3 cut(s) 137, 235, 265
Hpy99I CGWCG 2 cut(s) 12, 15
HpyAV CCTTC 2 cut(s) 70, 218
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 21, 214
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 10
Kpn2I TCCGGA 1 cut(s) 264
Kzo9I GATC 3 cut(s) 17, 29, 128
LpnPI CCDG 4 cut(s) 90, 122, 185, 278
MaeI CTAG 2 cut(s) 92, 114
MaeII ACGT 1 cut(s) 10
MalI GATC 3 cut(s) 19, 31, 130
MboI GATC 3 cut(s) 17, 29, 128
MboII GAAGA 2 cut(s) 254, 265
MflI RGATCY 1 cut(s) 17
MluCI AATT 1 cut(s) 281
MlyI GAGTC 2 cut(s) 197, 203
MnlI CCTC 2 cut(s) 88, 114
MroI TCCGGA 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 260
MspI CCGG 2 cut(s) 172, 265
MspR9I CCNGG 1 cut(s) 173
NciI CCSGG 1 cut(s) 173
NdeII GATC 3 cut(s) 17, 29, 128
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 211
PcsI WCGNNNNNNNCGW 3 cut(s) 124, 183, 203
PdmI GAANNNNTTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 71, 154
Ple19I CGATCG 1 cut(s) 32
PleI GAGTC 2 cut(s) 196, 202
PpsI GAGTC 2 cut(s) 196, 202
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 17
PvuI CGATCG 1 cut(s) 32
SatI GCNGC 2 cut(s) 70, 153
Sau3AI GATC 3 cut(s) 17, 29, 128
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 2 cut(s) 197, 203
ScrFI CCNGG 1 cut(s) 173
SetI ASST 3 cut(s) 13, 229, 262
SinI GGWCC 1 cut(s) 35
Sse9I AATT 1 cut(s) 281
SsiI CCGC 2 cut(s) 70, 153
SspMI CTAG 2 cut(s) 92, 114
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 206, 234
TasI AATT 1 cut(s) 281
TauI GCSGC 2 cut(s) 72, 155
TspGWI ACGGA 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 2 cut(s) 92, 114
ZraI GACGTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.