Rmu_sc0009428.1_g000013

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009428.1
Physical Location & Seq
Forward (+)
64506 .. 73385
8880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009428.1_g000013.1.cds

Sequence Viewer

Length: 1278 bp
atgctagaatcctctctttcttcttcaaaggttgatgatggaaaatgtgatgaagattgtggtggtggcaatgaaggttttatgaaggagatgaagagagaaagaagatgttatggattccggaattggtttcacgtgaatcgatccaaacaaccaccaaggatcgatcgacgaggctgctctgagctcaaccaagaagactcgaagccttgccgacttcggaacaaggatttccgaccgggtccgaaatccacaaactgtacctccttgcagcgccgccgtcgaggagaatcggcgctagagaacaccagagggacgaccagacggaggagacgatcctatctggaaagtttcatcgccggagatcgccggaaaagtcgggtcggatcgaccgagtccgggtcgggtcagccggatatcttcgattctgaaggtagcagcctagagagaagaaagagaaaggaattggttttccggaaaaggaaacttatgaaaataaaaaaagtttgcgtctgccactggttgttgcctgatctgtttatgacaccaacatgcacatatgtgcctaccaagaagttgaggatgccagaattcacaaccaagttcactacaaagtcgctcgggatggttgaagctccagatagtattttggtgccaaaagagtatgtgcatgaggaaaaggttgaaccaaagaaggaaaggggaagacctcttgatgacgaagaaactccggtcggagctacctcgccggtgtcgaactgcatcgagaatgcagaacttaaacttcggttgaagctaccttgccggagtcctcgacgccatttcgatccagaaaggattggcgaaggtgaggaccatggagttgggggcggtgtcgttgttggcagccccggagacgagtttgtcgggtgcaatagatgcctattgggggcaatagaggttttcgaaaaaatccgatgggcggcagccattgaccgggctacggcgaagtttcctatggctgactctagttttggcggaaccaacggaacccgatttgttatgaatgggaaaccattttacataaacggattcaatgcgtattggatgatgtacatggcatctgacccatctacacaggccaaggttacttctgcattccaacaggcctccaagtataagatgactgttgctagaacttgggctttcagtgatggtgttgggaaagcccttcaaacatcgcctggttcgtataacgaagatatgttcaaggtatccttctcaactttgcttgtataa

Protein Analysis

425

Amino Acids

48.06

Weight (kDa)

9.53

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019764)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 652
AccIII TCCGGA 2 cut(s) 120, 474
AciI CCGC 4 cut(s) 277, 870, 962, 1017
AclWI GGATC 5 cut(s) 138, 170, 330, 394, 821
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 1 cut(s) 450
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 817
AfaI GTAC 2 cut(s) 262, 1094
AfiI CCNNNNNNNGG 6 cut(s) 327, 399, 928, 961, 975, 982
AgsI TTSAA 7 cut(s) 27, 632, 686, 793, 1075, 1214, 1249
AjnI CCWGG 1 cut(s) 1222
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 4 cut(s) 187, 635, 740, 796
AluI AGCT 4 cut(s) 187, 635, 740, 796
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 325, 888
AlwI GGATC 5 cut(s) 138, 170, 330, 394, 821
Ama87I CYCGRG 1 cut(s) 620
Aor13HI TCCGGA 2 cut(s) 120, 474
AoxI GGCC 2 cut(s) 1119, 1146
ApeKI GCWGC 5 cut(s) 177, 271, 438, 885, 965
ApoI RAATTY 1 cut(s) 590
ArsI GACNNNNNNTTYG 2 cut(s) 995, 1027
AspLEI GCGC 2 cut(s) 276, 298
AspS9I GGNCC 2 cut(s) 242, 853
AsuC2I CCSGG 4 cut(s) 240, 400, 891, 977
AsuHPI GGTGA 1 cut(s) 860
AsuII TTCGAA 1 cut(s) 945
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 2 cut(s) 242, 853
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 189
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 204, 712
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 5 cut(s) 164, 283, 450, 897, 977
BccI CCATC 5 cut(s) 32, 619, 951, 1117, 1187
BceAI ACGGC 2 cut(s) 264, 999
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 1 cut(s) 1224
BciVI GTATCC 1 cut(s) 1264
BcnI CCSGG 4 cut(s) 240, 400, 891, 977
BcoDI GTCTC 2 cut(s) 325, 888
BfaI CTAG 5 cut(s) 5, 299, 443, 1008, 1173
BfoI RGCGCY 2 cut(s) 277, 299
BfuI GTATCC 1 cut(s) 1264
BisI GCNGC 7 cut(s) 178, 272, 277, 439, 886, 963, 966
BlsI GCNGC 7 cut(s) 179, 273, 278, 440, 887, 964, 967
Bme1390I CCNGG 5 cut(s) 240, 400, 891, 977, 1224
Bme18I GGWCC 2 cut(s) 242, 853
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 242, 853
BmiI GGNNCC 4 cut(s) 243, 654, 1021, 1030
BmrFI CCNGG 5 cut(s) 240, 400, 891, 977, 1224
BmsI GCATC 4 cut(s) 573, 771, 908, 1109
BpiI GAAGAC 2 cut(s) 204, 712
BpmI CTGGAG 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 945
BpuMI CCSGG 4 cut(s) 240, 400, 891, 977
Bsa29I ATCGAT 2 cut(s) 142, 165
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 817
BsaJI CCNNGG 4 cut(s) 158, 856, 889, 1122
BsaWI WCCGGW 3 cut(s) 120, 474, 730
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 6 cut(s) 327, 399, 928, 961, 975, 982
Bse118I RCCGGY 1 cut(s) 748
Bse1I ACTGG 1 cut(s) 524
Bse3DI GCAATG 1 cut(s) 76
BseAI TCCGGA 2 cut(s) 120, 474
BseBI CCWGG 1 cut(s) 1224
BseCI ATCGAT 2 cut(s) 142, 165
BseDI CCNNGG 4 cut(s) 158, 856, 889, 1122
BseGI GGATG 3 cut(s) 588, 630, 1092
BseLI CCNNNNNNNGG 6 cut(s) 327, 399, 928, 961, 975, 982
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 524
BseRI GAGGAG 2 cut(s) 300, 343
BseXI GCAGC 5 cut(s) 164, 283, 450, 897, 977
Bsh1285I CGRYCG 4 cut(s) 169, 239, 393, 735
BshFI GGCC 2 cut(s) 1121, 1148
BshNI GGYRCC 1 cut(s) 652
BshVI ATCGAT 2 cut(s) 142, 165
BsiEI CGRYCG 4 cut(s) 169, 239, 393, 735
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 620
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 6 cut(s) 327, 399, 928, 961, 975, 982
BsmAI GTCTC 2 cut(s) 325, 888
BsmBI CGTCTC 2 cut(s) 325, 888
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 2 cut(s) 775, 1136
BsnI GGCC 2 cut(s) 1121, 1148
BsoBI CYCGRG 1 cut(s) 620
Bsp119I TTCGAA 1 cut(s) 945
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 2 cut(s) 120, 474
Bsp1407I TGTACA 1 cut(s) 1092
Bsp143I GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
Bsp19I CCATGG 1 cut(s) 856
BspACI CCGC 4 cut(s) 277, 870, 962, 1017
BspANI GGCC 2 cut(s) 1121, 1148
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 2 cut(s) 142, 165
BspEI TCCGGA 2 cut(s) 120, 474
BspLI GGNNCC 4 cut(s) 243, 654, 1021, 1030
BspPI GGATC 5 cut(s) 138, 170, 330, 394, 821
BspT104I TTCGAA 1 cut(s) 945
BspT107I GGYRCC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 748
BsrGI TGTACA 1 cut(s) 1092
BsrI ACTGG 1 cut(s) 524
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 4 cut(s) 158, 856, 889, 1122
BssMI GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
BssNI GRCGYC 1 cut(s) 817
BssT1I CCWWGG 3 cut(s) 158, 856, 1122
Bst2UI CCWGG 1 cut(s) 1224
Bst4CI ACNGT 2 cut(s) 260, 1168
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 817
BstAPI GCANNNNNTGC 1 cut(s) 918
BstAUI TGTACA 1 cut(s) 1092
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 945
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 856
BstF5I GGATG 3 cut(s) 588, 630, 1092
BstH2I RGCGCY 2 cut(s) 277, 299
BstHHI GCGC 2 cut(s) 276, 298
BstKTI GATC 8 cut(s) 146, 165, 169, 338, 367, 389, 535, 829
BstMAI GTCTC 2 cut(s) 325, 888
BstMBI GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
BstMCI CGRYCG 4 cut(s) 169, 239, 393, 735
BstMWI GCNNNNNNNGC 1 cut(s) 918
BstNI CCWGG 1 cut(s) 1224
BstNSI RCATGY 1 cut(s) 555
BstSCI CCNGG 5 cut(s) 238, 398, 889, 975, 1222
BstV1I GCAGC 5 cut(s) 164, 283, 450, 897, 977
BstV2I GAAGAC 2 cut(s) 204, 712
BstXI CCANNNNNNTGG 1 cut(s) 863
Bsu15I ATCGAT 2 cut(s) 142, 165
BsuI GTATCC 1 cut(s) 1264
BsuRI GGCC 2 cut(s) 1121, 1148
BsuTUI ATCGAT 2 cut(s) 142, 165
BtgI CCRYGG 1 cut(s) 856
BtgZI GCGATG 2 cut(s) 340, 1203
BtsCI GGATG 3 cut(s) 588, 630, 1092
BtsIMutI CAGTG 2 cut(s) 517, 1195
CfoI GCGC 2 cut(s) 276, 298
Cfr10I RCCGGY 1 cut(s) 748
Cfr13I GGNCC 2 cut(s) 242, 853
ClaI ATCGAT 2 cut(s) 142, 165
CseI GACGC 2 cut(s) 499, 825
Csp6I GTAC 2 cut(s) 261, 1093
CviAII CATG 4 cut(s) 552, 671, 857, 1096
CviQI GTAC 2 cut(s) 261, 1093
DdeI CTNAG 1 cut(s) 183
DpnI GATC 8 cut(s) 145, 164, 168, 337, 366, 388, 534, 828
DpnII GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 1032
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 3 cut(s) 158, 856, 1122
Eco147I AGGCCT 1 cut(s) 1148
Eco24I GRGCYC 1 cut(s) 189
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 242, 853
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 450
Eco72I CACGTG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 1222
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 3 cut(s) 158, 856, 1122
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 3 cut(s) 158, 856, 1122
Esp3I CGTCTC 2 cut(s) 325, 888
FaeI CATG 4 cut(s) 555, 674, 860, 1099
FalI AAGNNNNNCTT 2 cut(s) 1241, 1273
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 551, 670, 856, 1095
FauNDI CATATG 1 cut(s) 559
Fnu4HI GCNGC 7 cut(s) 178, 272, 277, 439, 886, 963, 966
FokI GGATG 3 cut(s) 595, 637, 1099
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 7 cut(s) 178, 272, 277, 439, 886, 963, 966
FspBI CTAG 5 cut(s) 5, 299, 443, 1008, 1173
GlaI GCGC 2 cut(s) 275, 297
GluI GCNGC 7 cut(s) 178, 272, 277, 439, 886, 963, 966
GsuI CTGGAG 1 cut(s) 621
HaeII RGCGCY 2 cut(s) 277, 299
HaeIII GGCC 2 cut(s) 1121, 1148
HgaI GACGC 2 cut(s) 499, 825
HhaI GCGC 2 cut(s) 276, 298
Hin1I GRCGYC 1 cut(s) 817
Hin1II CATG 4 cut(s) 555, 674, 860, 1099
Hin6I GCGC 2 cut(s) 274, 296
HinP1I GCGC 2 cut(s) 274, 296
HphI GGTGA 1 cut(s) 860
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 9 cut(s) 184, 222, 236, 246, 386, 430, 737, 956, 1105
Hpy188III TCNNGA 8 cut(s) 121, 344, 475, 622, 638, 713, 766, 830
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 3 cut(s) 174, 285, 819
HpyAV CCTTC 7 cut(s) 68, 79, 425, 688, 839, 1220, 1267
HpyCH4III ACNGT 2 cut(s) 260, 1168
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 7 cut(s) 271, 555, 670, 762, 773, 912, 1136
HpyF10VI GCNNNNNNNGC 1 cut(s) 918
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 817
Hsp92II CATG 4 cut(s) 555, 674, 860, 1099
HspAI GCGC 2 cut(s) 274, 296
Kpn2I TCCGGA 2 cut(s) 120, 474
Kzo9I GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
LmnI GCTCC 2 cut(s) 640, 737
Lsp1109I GCAGC 5 cut(s) 164, 283, 450, 897, 977
LweI GCATC 4 cut(s) 573, 771, 908, 1109
MaeI CTAG 5 cut(s) 5, 299, 443, 1008, 1173
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 1126
MalI GATC 8 cut(s) 145, 164, 168, 337, 366, 388, 534, 828
MboI GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 124, 464, 590
MlyI GAGTC 4 cut(s) 194, 404, 817, 998
MmeI TCCRAC 4 cut(s) 259, 364, 715, 1165
MroI TCCGGA 2 cut(s) 120, 474
MseI TTAA 1 cut(s) 780
MslI CAYNNNNRTG 2 cut(s) 550, 560
MspR9I CCNGG 5 cut(s) 240, 400, 891, 977, 1224
Mva1269I GAATGC 2 cut(s) 775, 1136
MvaI CCWGG 1 cut(s) 1224
MwoI GCNNNNNNNGC 1 cut(s) 918
NciI CCSGG 4 cut(s) 240, 400, 891, 977
NcoI CCATGG 1 cut(s) 856
NdeI CATATG 1 cut(s) 559
NdeII GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
NlaIII CATG 4 cut(s) 555, 674, 860, 1099
NlaIV GGNNCC 4 cut(s) 243, 654, 1021, 1030
NspI RCATGY 1 cut(s) 555
NspV TTCGAA 1 cut(s) 945
OliI CACNNNNGTG 1 cut(s) 560
PceI AGGCCT 1 cut(s) 1148
PcsI WCGNNNNNNNCGW 4 cut(s) 331, 390, 752, 1226
PctI GAATGC 2 cut(s) 775, 1136
PfeI GAWTC 6 cut(s) 8, 117, 139, 290, 425, 1071
PflFI GACNNNGTC 2 cut(s) 240, 394
PkrI GCNGC 7 cut(s) 179, 273, 278, 440, 887, 964, 967
Ple19I CGATCG 1 cut(s) 169
PleI GAGTC 4 cut(s) 194, 403, 816, 998
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 4 cut(s) 194, 403, 816, 998
Ppu21I YACGTR 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 1222
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 1222
PspN4I GGNNCC 4 cut(s) 243, 654, 1021, 1030
PspPI GGNCC 2 cut(s) 242, 853
PsyI GACNNNGTC 2 cut(s) 240, 394
PvuI CGATCG 1 cut(s) 169
RsaI GTAC 2 cut(s) 262, 1094
RsaNI GTAC 2 cut(s) 261, 1093
RseI CAYNNNNRTG 2 cut(s) 550, 560
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 7 cut(s) 178, 272, 277, 439, 886, 963, 966
Sau3AI GATC 8 cut(s) 143, 162, 166, 335, 364, 386, 532, 826
Sau96I GGNCC 2 cut(s) 242, 853
SchI GAGTC 4 cut(s) 194, 404, 817, 998
ScrFI CCNGG 5 cut(s) 240, 400, 891, 977, 1224
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 4 cut(s) 573, 771, 908, 1109
SfuI TTCGAA 1 cut(s) 945
SgrAI CRCCGGYG 1 cut(s) 748
SinI GGWCC 2 cut(s) 242, 853
SmiMI CAYNNNNRTG 2 cut(s) 550, 560
Sse9I AATT 3 cut(s) 124, 464, 590
SseBI AGGCCT 1 cut(s) 1148
SsiI CCGC 4 cut(s) 277, 870, 962, 1017
SspMI CTAG 5 cut(s) 5, 299, 443, 1008, 1173
SstI GAGCTC 1 cut(s) 189
StuI AGGCCT 1 cut(s) 1148
StyD4I CCNGG 5 cut(s) 238, 398, 889, 975, 1222
StyI CCWWGG 3 cut(s) 158, 856, 1122
TaaI ACNGT 2 cut(s) 260, 1168
TaiI ACGT 1 cut(s) 138
TaqII GACCGA 1 cut(s) 407
TasI AATT 3 cut(s) 124, 464, 590
TatI WGTACW 1 cut(s) 1092
TauI GCSGC 2 cut(s) 279, 965
TfiI GAWTC 6 cut(s) 8, 117, 139, 290, 425, 1071
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TscAI CASTG 2 cut(s) 524, 1195
TseI GCWGC 5 cut(s) 177, 271, 438, 885, 965
TspDTI ATGAA 7 cut(s) 66, 87, 98, 107, 343, 506, 1058
TspGWI ACGGA 3 cut(s) 340, 1041, 1083
TspRI CASTG 2 cut(s) 524, 1195
Tth111I GACNNNGTC 2 cut(s) 240, 394
VpaK11BI GGWCC 2 cut(s) 242, 853
XapI RAATTY 1 cut(s) 590
XceI RCATGY 1 cut(s) 555
XspI CTAG 5 cut(s) 5, 299, 443, 1008, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.