Rmu_sc0004331.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004331.1
OG0012906
Physical Location & Seq
Reverse (-)
52411 .. 54043
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
atgagcttgaggtacgcgagcagagtgttgtaccaggcagggatgaggctgatgaaagaccaggcccccaagctaagtggcgagtcgaccgttaagtctctcagggattcagcttcctcagcttcttcttcttcgtcgtcttcgaagttacagacgaggcggttctctgtaactattgattcaaagggaagtgcttttaaggaggccaagagcgagaagcttaagaatgcagaggagtctctgaggaccgtcatgtacttgagctgctgggaagaagctggtctagtcgaaatctcaggcctcagcacccacgagaggtttctatgtcgcctaacgatatcgtcattgaatctgctaagggtgatatcggagcaagaaggatgcacaattgaggagctaaatgcaggaagaatatgcgattggtttgtaaaggacaagctcaaaagagagcagaatttaggctctgctgttcttcaatgggatgactcccagcctttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.57

Weight (kDa)

8.69

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 18 - 90 3e-11 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21445
fragaria_vesca FvH4_3g03820 FvH4_3g03870
malus_domestica MD05G1326300.v1.1 MD10G1304300.v1.1
prunus_persica Prupe.4G035400_v2.0.a1
pyrus_communis pycom05g30070 pycom10g25680
rosa_chinensis RchiOBHm_Chr5g0006121
rosa_laevigata RLG00000031381
rosa_multiflora Rmu_sc0004331.1_g000011
rosa_roxburghii Rroxscaffold_1G00069880
rosa_rugosa Rorug04G0419600
rosa_samantha Rh5AG047400 Rh5BG046100 Rh5CG054800 Rh5DG045900
rosa_wichuraiana Rw5G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 86
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 454
AfaI GTAC 3 cut(s) 14, 32, 257
AfiI CCNNNNNNNGG 1 cut(s) 315
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 3 cut(s) 183, 349, 476
AjnI CCWGG 2 cut(s) 33, 60
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AluBI AGCT 9 cut(s) 6, 73, 113, 122, 220, 264, 278, 397, 439
AluI AGCT 9 cut(s) 6, 73, 113, 122, 220, 264, 278, 397, 439
Alw26I GTCTC 2 cut(s) 102, 243
AoxI GGCC 3 cut(s) 63, 204, 298
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 454
AspS9I GGNCC 2 cut(s) 64, 246
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 246
BauI CACGAG 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 132
BbvCI CCTCAGC 2 cut(s) 118, 302
BbvI GCAGC 1 cut(s) 251
BciT130I CCWGG 2 cut(s) 35, 62
BcoDI GTCTC 2 cut(s) 102, 243
BfaI CTAG 1 cut(s) 284
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 2 cut(s) 35, 62
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 64, 246
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 35, 62
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 132
Bpu10I CCTNAGC 3 cut(s) 118, 302, 356
Bpu14I TTCGAA 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 28, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 315
BseBI CCWGG 2 cut(s) 35, 62
BseGI GGATG 3 cut(s) 48, 386, 487
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 5 cut(s) 115, 132, 233, 309, 316
BseRI GAGGAG 2 cut(s) 248, 407
BseXI GCAGC 1 cut(s) 251
BseYI CCCAGC 2 cut(s) 267, 489
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 65, 206, 300
BsiEI CGRYCG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 2 cut(s) 102, 243
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 3 cut(s) 65, 206, 300
Bsp119I TTCGAA 1 cut(s) 143
BspACI CCGC 1 cut(s) 160
BspANI GGCC 3 cut(s) 65, 206, 300
BspCNI CTCAG 5 cut(s) 114, 131, 234, 308, 315
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 143
BspTI CTTAAG 1 cut(s) 221
BssSI CACGAG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 35, 62
Bst4CI ACNGT 2 cut(s) 91, 250
BstAFI CTTAAG 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 7 cut(s) 74, 101, 118, 242, 295, 302, 356
BstF5I GGATG 3 cut(s) 48, 386, 487
BstFNI CGCG 1 cut(s) 17
BstMAI GTCTC 2 cut(s) 102, 243
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 35, 62
BstSCI CCNGG 2 cut(s) 33, 60
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 3 cut(s) 65, 206, 300
BtsCI GGATG 3 cut(s) 48, 386, 487
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 64, 246
Csp6I GTAC 3 cut(s) 13, 31, 256
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 253
CviQI GTAC 3 cut(s) 13, 31, 256
DdeI CTNAG 7 cut(s) 74, 101, 118, 242, 295, 302, 356
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 300
Eco32I GATATC 2 cut(s) 339, 366
Eco47I GGWCC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 33, 60
EcoRV GATATC 2 cut(s) 339, 366
FaeI CATG 1 cut(s) 256
FaiI YATR 3 cut(s) 254, 325, 415
FatI CATG 1 cut(s) 252
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 3 cut(s) 55, 393, 494
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 265
GsaI CCCAGC 2 cut(s) 271, 493
HaeIII GGCC 3 cut(s) 65, 206, 300
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 6 cut(s) 83, 107, 179, 236, 349, 485
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 243, 370
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 91, 250
HpyCH4V TGCA 3 cut(s) 230, 384, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 7 cut(s) 74, 101, 118, 242, 295, 302, 356
Hsp92II CATG 1 cut(s) 256
LmnI GCTCC 2 cut(s) 370, 394
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 2 cut(s) 147, 169
MboII GAAGA 7 cut(s) 117, 120, 123, 132, 284, 420, 464
MfeI CAATTG 1 cut(s) 387
MluCI AATT 2 cut(s) 387, 454
MlyI GAGTC 3 cut(s) 92, 245, 479
MseI TTAA 4 cut(s) 93, 198, 222, 499
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 35, 62
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 2 cut(s) 35, 62
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 66
NspV TTCGAA 1 cut(s) 143
PceI AGGCCT 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 107, 179, 349
PkrI GCNGC 1 cut(s) 266
PleI GAGTC 3 cut(s) 91, 244, 479
PpsI GAGTC 3 cut(s) 91, 244, 479
Psp6I CCWGG 2 cut(s) 33, 60
PspFI CCCAGC 2 cut(s) 267, 489
PspGI CCWGG 2 cut(s) 33, 60
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 64, 246
RsaI GTAC 3 cut(s) 14, 32, 257
RsaNI GTAC 3 cut(s) 13, 31, 256
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 4 cut(s) 93, 198, 222, 499
SatI GCNGC 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 64, 246
SchI GAGTC 3 cut(s) 92, 245, 479
ScrFI CCNGG 2 cut(s) 35, 62
SfaNI GCATC 1 cut(s) 371
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 1 cut(s) 246
SmlI CTYRAG 3 cut(s) 7, 221, 259
SmoI CTYRAG 3 cut(s) 7, 221, 259
Sse9I AATT 2 cut(s) 387, 454
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 284
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 33, 60
TaaI ACNGT 2 cut(s) 91, 250
TaqI TCGA 3 cut(s) 86, 143, 288
TasI AATT 2 cut(s) 387, 454
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 3 cut(s) 107, 179, 349
Tru1I TTAA 4 cut(s) 93, 198, 222, 499
Tru9I TTAA 4 cut(s) 93, 198, 222, 499
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 68
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.