Rmu_sc0004483.1_g000043

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004483.1
OG0020063
Physical Location & Seq
Reverse (-)
174785 .. 175793
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004483.1_g000043.1.cds

Sequence Viewer

Length: 363 bp
atggctttcattgatgctatcacagcaagtttcgctgcttcccttgccctcgctgaaggaggcagcgctcctgacctaggaaagattggtggtggcctcgtccgcaggtcctccctgttggaacttgtgggacttcccacatggaagaaagttttaaggcttatggaacgggctggagatttattcttgttctcctttgaatcaatgcttgatcgcaataaggtactccgaggtgggggttggtgttttgatcgagcctcggtttgctttaaagagtatgatagcgtcaaacctcttcatgaagatcctgcagctttcgatactgtttctagccctaaagacaagggcaaaggaaagttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.99

Weight (kDa)

8.62

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 225
AfeI AGCGCT 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 77, 235
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwI GGATC 1 cut(s) 299
Aor51HI AGCGCT 1 cut(s) 67
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 35, 63, 311
AspA2I CCTAGG 1 cut(s) 76
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 108
AvaII GGWCC 1 cut(s) 108
AvrII CCTAGG 1 cut(s) 76
BbvI GCAGC 3 cut(s) 22, 75, 323
BfaI CTAG 2 cut(s) 77, 330
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 96
BisI GCNGC 3 cut(s) 36, 64, 312
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 3 cut(s) 37, 65, 313
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 76, 229, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 235
BseDI CCNNGG 3 cut(s) 76, 229, 258
BseLI CCNNNNNNNGG 2 cut(s) 77, 235
BseXI GCAGC 3 cut(s) 22, 75, 323
BshFI GGCC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 77, 235
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 211, 250, 304
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 96
BspHI TCATGA 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 76, 229, 258
BssMI GATC 3 cut(s) 211, 250, 304
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 3 cut(s) 214, 253, 307
BstMBI GATC 3 cut(s) 211, 250, 304
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 102
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 22, 75, 323
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 96
BveI ACCTGC 1 cut(s) 96
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 141, 299
CviJI RGCY 7 cut(s) 5, 96, 160, 173, 257, 314, 333
CviKI_1 RGCY 7 cut(s) 5, 96, 160, 173, 257, 314, 333
CviQI GTAC 1 cut(s) 224
DpnI GATC 3 cut(s) 213, 252, 306
DpnII GATC 3 cut(s) 211, 250, 304
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 108
Eco47III AGCGCT 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 144, 302
FaiI YATR 4 cut(s) 142, 164, 279, 300
FaqI GGGAC 1 cut(s) 144
FatI CATG 2 cut(s) 140, 298
Fnu4HI GCNGC 3 cut(s) 36, 64, 312
Fsp4HI GCNGC 3 cut(s) 36, 64, 312
FspBI CTAG 2 cut(s) 77, 330
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 36, 64, 312
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 96
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 144, 302
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 230
Hpy188III TCNNGA 2 cut(s) 71, 299
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 102
Hsp92II CATG 2 cut(s) 144, 302
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 3 cut(s) 211, 250, 304
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 84, 91, 128, 159, 321
Lsp1109I GCAGC 3 cut(s) 22, 75, 323
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 77, 330
MalI GATC 3 cut(s) 213, 252, 306
MboI GATC 3 cut(s) 211, 250, 304
MboII GAAGA 3 cut(s) 157, 287, 314
MflI RGATCY 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 7 cut(s) 53, 59, 107, 121, 224, 268, 303
MseI TTAA 3 cut(s) 155, 270, 361
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 102
NdeII GATC 3 cut(s) 211, 250, 304
NlaIII CATG 2 cut(s) 144, 302
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 37, 65, 313
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
PspPI GGNCC 1 cut(s) 108
PspPPI RGGWCCY 1 cut(s) 108
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 3 cut(s) 155, 270, 361
SatI GCNGC 3 cut(s) 36, 64, 312
Sau3AI GATC 3 cut(s) 211, 250, 304
Sau96I GGNCC 1 cut(s) 108
SetI ASST 6 cut(s) 78, 110, 225, 235, 295, 316
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 108
SsiI CCGC 1 cut(s) 103
SspMI CTAG 2 cut(s) 77, 330
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 253, 318
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 3 cut(s) 155, 270, 361
Tru9I TTAA 3 cut(s) 155, 270, 361
TseI GCWGC 3 cut(s) 35, 63, 311
TspDTI ATGAA 2 cut(s) 287, 315
VpaK11BI GGWCC 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 75
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 2 cut(s) 77, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.