Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

67610614 .. 67613831

Gene Structure 3218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0493400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGATGGGTGAACCATCGTTACAAGAGACGAATGAGGATGCTGTTGTAGATGAACCAAAACTTCAGCTTGGTCAAGAATTTGAATCAATAGAGGAGGCCTATTACTTTTACAATGAGATATATGCAAAGACTGTTGGTTTTAGTGTGAGAATGGGTTCAACTAAGAGAAGTAAGGTGACTGGAGATATTACTTGGAAACAATTTTTATGTTCCAAGGAAGGAAAAACAGATGACACTTATGAGAACTCAAGACGGCAACATTCATTGACCATGGAAGAAAGGAGGTGCGGAATAAAGCGTATGGGTTGTAAGGCAAGGTTGAACATCGTCTTTAACAAGGCAAGCAAAAAATGGTGTGTAAGTGACTTCGAGGAGGCTCATACACATGAACTTACAACCCCCAAAAGAGTACATTTATTACCATCACACCGCAAGCTTACAAAGGCAAAGAAGTGTCTCATGGAAAAGCTAAGTAGTGTTAATGTTCGAACAAGTCAGCAATTCAAAATAATGGAGACTGTGGCAGGTGGTATACAGAATGTTGGATGTATTCCAAGAGATTTGAGAAACTTTGAAAGAGATTCGAGGGAAGAAGTGAAGGGACATGATGCAACTATGCTACTTGAGTTCTTAGAGTCAGAAAAGGAAAAGAAGCAGTCTTTTTATTTTGAAGTTGACCGAGATGAAGAAAATAGGATGAATCGCTGCTTTTGGGCTGATCCTACCTCAAAAAAAGCATATTATTTCTTTAACGATGTTGTTGTGTTTGATACCACGTACAACACAAACAAATATCGCATGATCTTTGCTCCAATCACAGGCGTCAACCATCATGGCCAGACAATTGTATTTGGTTGTGGACTTTTAAGTGATGAGAAAACTGAGTCTTTTATTTGGTTACTGGAACAATGGTTGAAAGCTATGCCTAGTGGTCCACCGAAAGTTATAATTACTGATCAAGATCCAGCAATTGCAAAAGCCATTGCTCAAGTTCTTCCACTTACACTCCACCGTTTTTGTCTTTGGCATATCATGTTTAAATTTCGAGATAAGCTTGGTCCTGTGATTGCCCAAAGTTATTATGGACTCTTCAAAGCCAGTGTATATAACTCCGGGACTAAAGAAGAATTTGAAGCTAGTTGGAAGAATGCTGTGCAACAAAGTAGTCAAGAAAATCATGCTTGGTTGAACACAATGTATGAACTACGAAGTAAATGGGTCCCTGCATTTTGCAATCACATCTTTCATGCAGGTTTTCATACTGAAGAAGTAGAAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

427

Amino Acids

49.66

Weight (kDa)

7.95

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	36 - 132	1.8e-17	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	217 - 333	4.4e-08	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	253 - 345	8.8e-32	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	947
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	2 cut(s)	515, 1241
AccI	GTMKAC	1 cut(s)	532
AciI	CCGC	2 cut(s)	288, 430
AclWI	GGATC	2 cut(s)	713, 956
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	3 cut(s)	77, 1040, 1127
AcuI	CTGAAG	2 cut(s)	47, 1284
AcyI	GRCGYC	1 cut(s)	822
AfaI	GTAC	2 cut(s)	411, 779
AfiI	CCNNNNNNNGG	1 cut(s)	818
AluBI	AGCT	6 cut(s)	67, 436, 469, 920, 1054, 1136
AluI	AGCT	6 cut(s)	67, 436, 469, 920, 1054, 1136
Alw26I	GTCTC	3 cut(s)	20, 461, 509
AlwI	GGATC	2 cut(s)	713, 956
AoxI	GGCC	2 cut(s)	96, 835
ApeKI	GCWGC	1 cut(s)	705
ApoI	RAATTY	3 cut(s)	77, 1040, 1127
Asp700I	GAANNNNTTC	1 cut(s)	154
AspS9I	GGNCC	3 cut(s)	932, 1058, 1219
AsuC2I	CCSGG	1 cut(s)	1114
AsuHPI	GGTGA	2 cut(s)	20, 187
AsuII	TTCGAA	1 cut(s)	487
AvaII	GGWCC	3 cut(s)	932, 1058, 1219
BalI	TGGCCA	1 cut(s)	837
BbvI	GCAGC	1 cut(s)	692
BccI	CCATC	3 cut(s)	22, 430, 837
BceAI	ACGGC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	1114
BcoDI	GTCTC	3 cut(s)	20, 461, 509
BfaI	CTAG	2 cut(s)	927, 1137
BfuAI	ACCTGC	2 cut(s)	515, 1241
BisI	GCNGC	1 cut(s)	706
BlsI	GCNGC	1 cut(s)	707
Bme1390I	CCNGG	1 cut(s)	1114
Bme18I	GGWCC	3 cut(s)	932, 1058, 1219
BmgT120I	GGNCC	3 cut(s)	932, 1058, 1219
BmiI	GGNNCC	2 cut(s)	1220, 1221
BmrFI	CCNGG	1 cut(s)	1114
BmsI	GCATC	2 cut(s)	28, 598
BpmI	CTGGAG	1 cut(s)	201
Bpu14I	TTCGAA	1 cut(s)	487
BpuEI	CTTGAG	3 cut(s)	232, 644, 972
BpuMI	CCSGG	1 cut(s)	1114
BsaAI	YACGTR	1 cut(s)	777
BsaBI	GATNNNNATC	1 cut(s)	960
BsaHI	GRCGYC	1 cut(s)	822
BsaJI	CCNNGG	2 cut(s)	213, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	818
Bse1I	ACTGG	3 cut(s)	184, 906, 1098
Bse3DI	GCAATG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	960
BseDI	CCNNGG	2 cut(s)	213, 270
BseGI	GGATG	3 cut(s)	43, 551, 702
BseJI	GATNNNNATC	1 cut(s)	960
BseLI	CCNNNNNNNGG	1 cut(s)	818
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	3 cut(s)	184, 906, 1098
BseRI	GAGGAG	2 cut(s)	107, 386
BseXI	GCAGC	1 cut(s)	692
BshFI	GGCC	2 cut(s)	98, 837
BsiSI	CCGG	1 cut(s)	1113
BslFI	GGGAC	3 cut(s)	615, 1129, 1205
BslI	CCNNNNNNNGG	1 cut(s)	818
BsmAI	GTCTC	3 cut(s)	20, 461, 509
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	3 cut(s)	615, 1129, 1205
BsmI	GAATGC	1 cut(s)	1153
BsnI	GGCC	2 cut(s)	98, 837
Bsp119I	TTCGAA	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	718, 801, 955, 961
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	2 cut(s)	288, 430
BspANI	GGCC	2 cut(s)	98, 837
BspCNI	CTCAG	1 cut(s)	874
BspLI	GGNNCC	2 cut(s)	1220, 1221
BspMI	ACCTGC	2 cut(s)	515, 1241
BspPI	GGATC	2 cut(s)	713, 956
BspT104I	TTCGAA	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	3 cut(s)	184, 906, 1098
BssECI	CCNNGG	2 cut(s)	213, 270
BssMI	GATC	4 cut(s)	718, 801, 955, 961
BssNAI	GTATAC	1 cut(s)	533
BssNI	GRCGYC	1 cut(s)	822
BssT1I	CCWWGG	2 cut(s)	213, 270
Bst1107I	GTATAC	1 cut(s)	533
Bst4CI	ACNGT	3 cut(s)	133, 520, 1013
Bst6I	CTCTTC	1 cut(s)	1094
BstACI	GRCGYC	1 cut(s)	822
BstBAI	YACGTR	1 cut(s)	777
BstBI	TTCGAA	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	343, 434
BstDEI	CTNAG	4 cut(s)	162, 470, 631, 882
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	43, 551, 702
BstKTI	GATC	4 cut(s)	721, 804, 958, 964
BstMAI	GTCTC	3 cut(s)	20, 461, 509
BstMBI	GATC	4 cut(s)	718, 801, 955, 961
BstSCI	CCNGG	1 cut(s)	1112
BstV1I	GCAGC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BstZ17I	GTATAC	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	98, 837
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	43, 551, 702
BtsIMutI	CAGTG	1 cut(s)	1105
BveI	ACCTGC	2 cut(s)	515, 1241
Cac8I	GCNNGC	2 cut(s)	343, 434
Cfr13I	GGNCC	3 cut(s)	932, 1058, 1219
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	2 cut(s)	410, 778
CspCI	CAANNNNNGTGG	2 cut(s)	998, 1033
CviAII	CATG	9 cut(s)	271, 386, 460, 605, 799, 833, 1033, 1178, 1247
CviQI	GTAC	2 cut(s)	410, 778
DdeI	CTNAG	4 cut(s)	162, 470, 631, 882
DpnI	GATC	4 cut(s)	720, 803, 957, 963
DpnII	GATC	4 cut(s)	718, 801, 955, 961
DraI	TTTAAA	1 cut(s)	1039
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	1094
EarI	CTCTTC	1 cut(s)	1094
Eco130I	CCWWGG	2 cut(s)	213, 270
Eco147I	AGGCCT	1 cut(s)	98
Eco47I	GGWCC	3 cut(s)	932, 1058, 1219
Eco57I	CTGAAG	2 cut(s)	47, 1284
EcoO109I	RGGNCCY	1 cut(s)	1219
EcoT14I	CCWWGG	2 cut(s)	213, 270
ErhI	CCWWGG	2 cut(s)	213, 270
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	9 cut(s)	274, 389, 463, 608, 802, 836, 1036, 1181, 1250
FaqI	GGGAC	3 cut(s)	615, 1129, 1205
FatI	CATG	9 cut(s)	270, 385, 459, 604, 798, 832, 1032, 1177, 1246
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	706
FokI	GGATG	3 cut(s)	50, 558, 709
Fsp4HI	GCNGC	1 cut(s)	706
FspBI	CTAG	2 cut(s)	927, 1137
GluI	GCNGC	1 cut(s)	706
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	98, 837
HapII	CCGG	1 cut(s)	1113
HgaI	GACGC	1 cut(s)	811
Hin1I	GRCGYC	1 cut(s)	822
Hin1II	CATG	9 cut(s)	274, 389, 463, 608, 802, 836, 1036, 1181, 1250
HincII	GTYRAC	2 cut(s)	676, 826
HindII	GTYRAC	2 cut(s)	676, 826
HindIII	AAGCTT	2 cut(s)	434, 1052
HinfI	GANTC	6 cut(s)	83, 581, 635, 700, 884, 1086
HpaII	CCGG	1 cut(s)	1113
HphI	GGTGA	2 cut(s)	20, 187
Hpy166II	GTNNAC	6 cut(s)	11, 533, 676, 826, 860, 935
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	5 cut(s)	74, 249, 959, 1046, 1169
Hpy8I	GTNNAC	6 cut(s)	11, 533, 676, 826, 860, 935
HpyAV	CCTTC	2 cut(s)	212, 592
HpyCH4III	ACNGT	3 cut(s)	133, 520, 1013
HpyCH4IV	ACGT	1 cut(s)	776
HpyCH4V	TGCA	7 cut(s)	125, 611, 974, 1156, 1226, 1233, 1250
HpyF3I	CTNAG	4 cut(s)	162, 470, 631, 882
HpySE526I	ACGT	1 cut(s)	776
Hsp92I	GRCGYC	1 cut(s)	822
Hsp92II	CATG	9 cut(s)	274, 389, 463, 608, 802, 836, 1036, 1181, 1250
KflI	GGGWCCC	1 cut(s)	1219
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	4 cut(s)	718, 801, 955, 961
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	1 cut(s)	692
LweI	GCATC	2 cut(s)	28, 598
MaeI	CTAG	2 cut(s)	927, 1137
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	4 cut(s)	18, 175, 362, 897
MalI	GATC	4 cut(s)	720, 803, 957, 963
MboI	GATC	4 cut(s)	718, 801, 955, 961
MboII	GAAGA	8 cut(s)	287, 602, 698, 986, 1081, 1136, 1156, 1277
MfeI	CAATTG	2 cut(s)	843, 969
MflI	RGATCY	1 cut(s)	961
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	8 cut(s)	77, 200, 500, 843, 948, 969, 1040, 1127
MluNI	TGGCCA	1 cut(s)	837
MlyI	GAGTC	3 cut(s)	644, 893, 1080
MmeI	TCCRAC	2 cut(s)	523, 1121
MnlI	CCTC	8 cut(s)	28, 85, 88, 276, 364, 367, 579, 736
Mox20I	TGGCCA	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	5 cut(s)	333, 480, 750, 866, 1038
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	837
MspI	CCGG	1 cut(s)	1113
MspR9I	CCNGG	1 cut(s)	1114
MunI	CAATTG	2 cut(s)	843, 969
Mva1269I	GAATGC	1 cut(s)	1153
NciI	CCSGG	1 cut(s)	1114
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	4 cut(s)	718, 801, 955, 961
NlaIII	CATG	9 cut(s)	274, 389, 463, 608, 802, 836, 1036, 1181, 1250
NlaIV	GGNNCC	2 cut(s)	1220, 1221
NmuCI	GTSAC	2 cut(s)	175, 362
NspV	TTCGAA	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	515
PceI	AGGCCT	1 cut(s)	98
PctI	GAATGC	1 cut(s)	1153
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	83, 581, 700
PfoI	TCCNGGA	1 cut(s)	1112
PkrI	GCNGC	1 cut(s)	707
PleI	GAGTC	3 cut(s)	643, 892, 1080
PpsI	GAGTC	3 cut(s)	643, 892, 1080
Ppu21I	YACGTR	1 cut(s)	777
PpuMI	RGGWCCY	1 cut(s)	1219
PsiI	TTATAA	1 cut(s)	947
Psp5II	RGGWCCY	1 cut(s)	1219
PspN4I	GGNNCC	2 cut(s)	1220, 1221
PspPI	GGNCC	3 cut(s)	932, 1058, 1219
PspPPI	RGGWCCY	1 cut(s)	1219
PsrI	GAACNNNNNNTAC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	961
RsaI	GTAC	2 cut(s)	411, 779
RsaNI	GTAC	2 cut(s)	410, 778
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	333, 480, 750, 866, 1038
SatI	GCNGC	1 cut(s)	706
Sau3AI	GATC	4 cut(s)	718, 801, 955, 961
Sau96I	GGNCC	3 cut(s)	932, 1058, 1219
SchI	GAGTC	3 cut(s)	644, 893, 1080
ScrFI	CCNGG	1 cut(s)	1114
SfaNI	GCATC	2 cut(s)	28, 598
SfuI	TTCGAA	1 cut(s)	487
SinI	GGWCC	3 cut(s)	932, 1058, 1219
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	247, 623, 987
SmoI	CTYRAG	3 cut(s)	247, 623, 987
Sse9I	AATT	8 cut(s)	77, 200, 500, 843, 948, 969, 1040, 1127
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	288, 430
SspMI	CTAG	2 cut(s)	927, 1137
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	1112
StyI	CCWWGG	2 cut(s)	213, 270
TaaI	ACNGT	3 cut(s)	133, 520, 1013
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	4 cut(s)	369, 487, 584, 1045
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	8 cut(s)	77, 200, 500, 843, 948, 969, 1040, 1127
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	3 cut(s)	83, 581, 700
Tru1I	TTAA	5 cut(s)	333, 480, 750, 866, 1038
Tru9I	TTAA	5 cut(s)	333, 480, 750, 866, 1038
TscAI	CASTG	1 cut(s)	1105
TseFI	GTSAC	2 cut(s)	175, 362
TseI	GCWGC	1 cut(s)	705
Tsp45I	GTSAC	2 cut(s)	175, 362
TspDTI	ATGAA	8 cut(s)	66, 252, 402, 699, 713, 1215, 1235, 1247
TspRI	CASTG	1 cut(s)	1105
VpaK11BI	GGWCC	3 cut(s)	932, 1058, 1219
XapI	RAATTY	3 cut(s)	77, 1040, 1127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1079
XmiI	GTMKAC	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	2 cut(s)	927, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.