Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022692.1

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

6 .. 1853

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022692.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgcaggttgtcaatgctgcagttatagtagatccttcagttaaacaggtaattactactgcatgtgatcaaacttacccttggtatactcctgcgaacaacaccacccttgaaacatactgctttgaaaagacagaagcttctgtttctcagagccaatcagatggagtattcagctatgaaactctgcattcaaacagtttgccacattttccaaaacaattaaatactggtgtttgttgtttatatccatggggatgggctgagcaacaatcagacactaattcctgctcttggcaccctttacgtcatgctgctattgttgctattgaatcttctgctgccagggacatacatcttttccccagtttggggaaaatccaagataagtatgctgaaacggagcacatacactcttcttctgcaggctctccagccaaaagacaaaagacccattctacaaaagttaatgatgaggctcatctggacagtaatgatgaaggttccagttctttatcagtgagaccttatctatgtacaggttttgacatttaccttgcttgggagccctgcataatgtgtgcaatggcacttgtgcatcaaagaattaggcgtatattctttgcttttccgaacccaaatgcaggggcattgggcactgttcacagactacaaggggaaagaagcttaaaccatcactatgctgtatttagggtcttggttcctgaagaagtccttagtagggatgaaactgcggctgctgagtacaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

257

Amino Acids

28.64

Weight (kDa)

5.87

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	86
AciI	CCGC	1 cut(s)	755
AclWI	GGATC	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	21, 747
AfaI	GTAC	2 cut(s)	538, 767
AfiI	CCNNNNNNNGG	7 cut(s)	294, 370, 371, 372, 562, 644, 742
AgsI	TTSAA	4 cut(s)	113, 128, 195, 332
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	3 cut(s)	140, 177, 687
AluI	AGCT	3 cut(s)	140, 177, 687
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	26
ApeKI	GCWGC	4 cut(s)	17, 314, 341, 758
BaeGI	GKGCMC	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	4, 301, 328, 745
BccI	CCATC	3 cut(s)	158, 252, 702
BciT130I	CCWGG	1 cut(s)	346
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	517
BfmI	CTRYAG	2 cut(s)	18, 423
BisI	GCNGC	5 cut(s)	18, 315, 342, 756, 759
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	5 cut(s)	19, 316, 343, 757, 760
Bme1390I	CCNGG	1 cut(s)	346
BmiI	GGNNCC	4 cut(s)	299, 505, 567, 723
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	80, 251, 345
Bsc4I	CCNNNNNNNGG	7 cut(s)	294, 370, 371, 372, 562, 644, 742
Bse1I	ACTGG	3 cut(s)	235, 366, 507
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	3 cut(s)	80, 251, 345
BseGI	GGATG	2 cut(s)	263, 751
BseLI	CCNNNNNNNGG	7 cut(s)	294, 370, 371, 372, 562, 644, 742
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	3 cut(s)	164, 255, 753
BseNI	ACTGG	3 cut(s)	235, 366, 507
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	4 cut(s)	4, 301, 328, 745
BshNI	GGYRCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	7 cut(s)	294, 370, 371, 372, 562, 644, 742
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	408, 570, 659
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	2 cut(s)	31, 67
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	251
BspACI	CCGC	1 cut(s)	755
BspCNI	CTCAG	3 cut(s)	163, 256, 754
BspLI	GGNNCC	4 cut(s)	299, 505, 567, 723
BspMAI	CTGCAG	2 cut(s)	22, 427
BspPI	GGATC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	591
BsrGI	TGTACA	1 cut(s)	536
BsrI	ACTGG	3 cut(s)	235, 366, 507
BssECI	CCNNGG	3 cut(s)	80, 251, 345
BssMI	GATC	2 cut(s)	31, 67
BssNAI	GTATAC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	80, 251
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	3 cut(s)	200, 491, 661
Bst6I	CTCTTC	1 cut(s)	421
BstAUI	TGTACA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	4 cut(s)	150, 264, 737, 762
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	263, 751
BstKTI	GATC	2 cut(s)	34, 70
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	2 cut(s)	31, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	2 cut(s)	18, 423
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	4 cut(s)	4, 301, 328, 745
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	2 cut(s)	164, 258
BstYI	RGATCY	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	263, 751
BtsIMutI	CAGTG	2 cut(s)	525, 657
Cac8I	GCNNGC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	537, 766
CviAII	CATG	3 cut(s)	63, 252, 311
CviQI	GTAC	2 cut(s)	537, 766
DdeI	CTNAG	4 cut(s)	150, 264, 737, 762
DpnI	GATC	2 cut(s)	33, 69
DpnII	GATC	2 cut(s)	31, 67
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	80, 251
Eco24I	GRGCYC	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	517
Eco57I	CTGAAG	2 cut(s)	21, 747
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	80, 251
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	2 cut(s)	80, 251
FaeI	CATG	3 cut(s)	66, 255, 314
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	3 cut(s)	62, 251, 310
FbaI	TGATCA	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	5 cut(s)	18, 315, 342, 756, 759
FokI	GGATG	2 cut(s)	270, 758
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	5 cut(s)	18, 315, 342, 756, 759
GluI	GCNGC	5 cut(s)	18, 315, 342, 756, 759
GsuI	CTGGAG	1 cut(s)	417
Hin1II	CATG	3 cut(s)	66, 255, 314
HindIII	AAGCTT	2 cut(s)	138, 685
HinfI	GANTC	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	87, 664
Hpy188I	TCNGA	4 cut(s)	153, 163, 277, 633
Hpy188III	TCNNGA	2 cut(s)	485, 725
Hpy8I	GTNNAC	2 cut(s)	87, 664
HpyAV	CCTTC	2 cut(s)	45, 494
HpyCH4III	ACNGT	3 cut(s)	200, 491, 661
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	9 cut(s)	4, 20, 62, 190, 425, 573, 584, 598, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	4 cut(s)	150, 264, 737, 762
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	66, 255, 314
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	31, 67
LmnI	GCTCC	2 cut(s)	403, 565
Lsp1109I	GCAGC	4 cut(s)	4, 301, 328, 745
LweI	GCATC	1 cut(s)	607
MaeII	ACGT	1 cut(s)	307
MalI	GATC	2 cut(s)	33, 69
MboI	GATC	2 cut(s)	31, 67
MboII	GAAGA	4 cut(s)	327, 408, 411, 740
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	3 cut(s)	408, 570, 659
MluCI	AATT	4 cut(s)	51, 221, 283, 606
MnlI	CCTC	1 cut(s)	469
MseI	TTAA	4 cut(s)	42, 224, 468, 689
MslI	CAYNNNNRTG	2 cut(s)	256, 699
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	31, 67
NlaIII	CATG	3 cut(s)	66, 255, 314
NlaIV	GGNNCC	4 cut(s)	299, 505, 567, 723
NspI	RCATGY	1 cut(s)	66
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	5 cut(s)	19, 316, 343, 757, 760
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	299, 505, 567, 723
PstI	CTGCAG	2 cut(s)	22, 427
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	538, 767
RsaNI	GTAC	2 cut(s)	537, 766
RseI	CAYNNNNRTG	2 cut(s)	256, 699
SaqAI	TTAA	4 cut(s)	42, 224, 468, 689
SatI	GCNGC	5 cut(s)	18, 315, 342, 756, 759
Sau3AI	GATC	2 cut(s)	31, 67
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	3 cut(s)	408, 570, 659
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	2 cut(s)	18, 423
SmiMI	CAYNNNNRTG	2 cut(s)	256, 699
Sse9I	AATT	4 cut(s)	51, 221, 283, 606
SsiI	CCGC	1 cut(s)	755
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	80, 251
TaaI	ACNGT	3 cut(s)	200, 491, 661
TaiI	ACGT	1 cut(s)	310
TasI	AATT	4 cut(s)	51, 221, 283, 606
TatI	WGTACW	2 cut(s)	536, 765
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	4 cut(s)	42, 224, 468, 689
Tru9I	TTAA	4 cut(s)	42, 224, 468, 689
TscAI	CASTG	2 cut(s)	525, 664
TseI	GCWGC	4 cut(s)	17, 314, 341, 758
TspDTI	ATGAA	3 cut(s)	195, 513, 762
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	525, 664
XceI	RCATGY	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.