Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

252027 .. 256316

Gene Structure 4290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGGAGACGTGGCAGATAGTCCACATCCCCGACAACCCCCCATTCCCTCCCGACCAACAACCTACCGTCGATGCAATTGCTTCACTTATAGACCCTTTATTTGCCAACACTCTCGTAAGGCGTTTGAACCAAATTGCACCGCTGGAAAATCTTCGGCACATCAAGCGGGTGCACAAGAAATTTGTTCAAGGAGGAAAAACTCAGTTGTCTGTGATACTATGTCTAGCTTCTCAAAATGGTAATCAGTTGGACAGCATTCAGAATGATGTACAGGAGCTGATGAATTCCTACCAGTTGAGTCCTTTTGTCACAAAAGTCTGCAAGTATGCTGCATCATCAAAAGAAGAGTGGGAAGAACAATGCAAGCTATGGCCAACATCTTATCATCCCCCAACTTATAATATTGAAGGCATTACTGGATTCAGTCAAGAGGACTCACAATCAGTCTTCAGCTTCATGAAGTATGCTGTTCAGTTGGCAAAGTCTGGTGATAATTTGGAAGTCAACGCTGCAGTTATAGTGGATCCTTCTGTTAAACAGGTTATTGCGAAAGCATGTGATCAAACTTGTTCTTGCTATAATCCCAAAAACGAGATCACCCCTGAAACCAGCTGCATTGAAAAGCTGGAAACTTCTGTTTGCCATGGCATTTCAGGTGGTGCATTGAGCCGTAAAGAGCATTCAAATGGCTTTCCAGCTAAATCAGAACAGTTGTACACTGGCGTTTCTTGTTTATGTCCTTGGGGATGGGCTGAGCAAGAATCAGACATGAGTTTGAGTTATTGCCACCCTTTACGCCACGCTTCCATTGTTGCTATTGAGTCTTCTGCTGCCAGGGACAGGCTTCTTTTCCCCAGTTCGGGAAAAACACAAGATAAGTCATTTGAAATGGACCACATGCAGTCTTGTTCAGCAGCCTGTCCAGCAAAGAGACAAAAGACCAACCCCACAAATATTCAGGTTAATGGTGAAGAGAATCTGGACTTGAATGGTGAAGGTTGCAGCGGATCGCTGTCAGCGAGGCCTTATCTATGCACAGGTTTTGACATGTACCTTGTTTGGGAGCCGTGCATAATGTGTGCAATGGCACTTGTGCATCAGAGGATCAGGCGGATATTCTATGCATATCCAAACCCAAAAGCAGGAGCATTGGGGAGTGTCCACAGACTGCAAGGCCAAAGAAGCTTGAATCATCACTATGCTGTTTTCAGGGTCTTAGTGGGGACGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

413

Amino Acids

45.82

Weight (kDa)

6.23

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AciI	CCGC	4 cut(s)	143, 169, 1008, 1114
AclWI	GGATC	4 cut(s)	521, 534, 1018, 1115
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	182, 286
AcuI	CTGAAG	1 cut(s)	436
AfaI	GTAC	3 cut(s)	273, 719, 1055
AfiI	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1063, 1145
AflIII	ACRYGT	1 cut(s)	1050
AgsI	TTSAA	8 cut(s)	130, 191, 410, 623, 687, 890, 991, 1192
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	836
AluBI	AGCT	8 cut(s)	230, 280, 370, 456, 615, 628, 701, 1188
AluI	AGCT	8 cut(s)	230, 280, 370, 456, 615, 628, 701, 1188
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	2, 928
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	4 cut(s)	521, 534, 1018, 1115
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	3 cut(s)	374, 1025, 1177
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	6 cut(s)	332, 512, 615, 833, 917, 1005
ApoI	RAATTY	2 cut(s)	182, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	895
AsuHPI	GGTGA	4 cut(s)	503, 592, 983, 1007
AvaII	GGWCC	1 cut(s)	895
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	526
BbsI	GAAGAC	2 cut(s)	442, 819
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	6 cut(s)	319, 499, 602, 820, 929, 1017
BccI	CCATC	1 cut(s)	744
BceAI	ACGGC	2 cut(s)	657, 1054
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	838
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	2, 928
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	6 cut(s)	333, 513, 616, 834, 918, 1006
BlpI	GCTNAGC	1 cut(s)	756
BlsI	GCNGC	6 cut(s)	334, 514, 617, 835, 919, 1007
Bme1390I	CCNGG	1 cut(s)	838
Bme18I	GGWCC	1 cut(s)	895
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	895
BmiI	GGNNCC	2 cut(s)	528, 1068
BmrFI	CCNGG	1 cut(s)	838
BmrI	ACTGGG	1 cut(s)	852
BmsI	GCATC	3 cut(s)	64, 344, 1108
BmuI	ACTGGG	1 cut(s)	852
BpiI	GAAGAC	2 cut(s)	442, 819
Bpu1102I	GCTNAGC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	646, 743, 837
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1063, 1145
Bse1I	ACTGG	4 cut(s)	295, 424, 727, 858
Bse3DI	GCAATG	1 cut(s)	1092
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	3 cut(s)	646, 743, 837
BseGI	GGATG	3 cut(s)	27, 388, 755
BseLI	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1063, 1145
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	2 cut(s)	218, 747
BseNI	ACTGG	4 cut(s)	295, 424, 727, 858
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	6 cut(s)	319, 499, 602, 820, 929, 1017
BshFI	GGCC	3 cut(s)	376, 1027, 1179
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1063, 1145
BsmAI	GTCTC	2 cut(s)	2, 928
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	854
BsmI	GAATGC	2 cut(s)	258, 682
BsnI	GGCC	3 cut(s)	376, 1027, 1179
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	2 cut(s)	271, 717
Bsp143I	GATC	5 cut(s)	526, 562, 597, 1010, 1107
Bsp1720I	GCTNAGC	1 cut(s)	756
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	4 cut(s)	143, 169, 1008, 1114
BspANI	GGCC	3 cut(s)	376, 1027, 1179
BspCNI	CTCAG	2 cut(s)	217, 748
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	528, 1068
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	4 cut(s)	521, 534, 1018, 1115
BsrDI	GCAATG	1 cut(s)	1092
BsrGI	TGTACA	2 cut(s)	271, 717
BsrI	ACTGG	4 cut(s)	295, 424, 727, 858
BssECI	CCNNGG	3 cut(s)	646, 743, 837
BssMI	GATC	5 cut(s)	526, 562, 597, 1010, 1107
BssT1I	CCWWGG	2 cut(s)	646, 743
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	2 cut(s)	70, 714
Bst6I	CTCTTC	2 cut(s)	342, 969
BstAUI	TGTACA	2 cut(s)	271, 717
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	204, 756, 1219
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	3 cut(s)	27, 388, 755
BstKTI	GATC	5 cut(s)	529, 565, 600, 1013, 1110
BstMAI	GTCTC	2 cut(s)	2, 928
BstMBI	GATC	5 cut(s)	526, 562, 597, 1010, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 926, 1185
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	3 cut(s)	561, 904, 1054
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	6 cut(s)	319, 499, 602, 820, 929, 1017
BstV2I	GAAGAC	2 cut(s)	442, 819
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	376, 1027, 1179
BtgI	CCRYGG	1 cut(s)	646
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	27, 388, 755
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	1 cut(s)	368
CaiI	CAGNNNCTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	895
Csp6I	GTAC	3 cut(s)	272, 718, 1054
CviAII	CATG	6 cut(s)	460, 558, 647, 772, 901, 1051
CviQI	GTAC	3 cut(s)	272, 718, 1054
DdeI	CTNAG	3 cut(s)	204, 756, 1219
DpnI	GATC	5 cut(s)	528, 564, 599, 1012, 1109
DpnII	GATC	5 cut(s)	526, 562, 597, 1010, 1107
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	342, 969
EarI	CTCTTC	2 cut(s)	342, 969
EciI	GGCGGA	1 cut(s)	1129
Eco130I	CCWWGG	2 cut(s)	646, 743
Eco147I	AGGCCT	1 cut(s)	1027
Eco47I	GGWCC	1 cut(s)	895
Eco57I	CTGAAG	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	836
EcoT14I	CCWWGG	2 cut(s)	646, 743
EcoT22I	ATGCAT	1 cut(s)	1129
ErhI	CCWWGG	2 cut(s)	646, 743
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	6 cut(s)	463, 561, 650, 775, 904, 1054
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	6 cut(s)	459, 557, 646, 771, 900, 1050
FauI	CCCGC	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	6 cut(s)	333, 513, 616, 834, 918, 1006
FokI	GGATG	3 cut(s)	14, 375, 762
Fsp4HI	GCNGC	6 cut(s)	333, 513, 616, 834, 918, 1006
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	6 cut(s)	333, 513, 616, 834, 918, 1006
HaeIII	GGCC	3 cut(s)	376, 1027, 1179
Hin1II	CATG	6 cut(s)	463, 561, 650, 775, 904, 1054
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	1186
HinfI	GANTC	7 cut(s)	301, 423, 437, 764, 824, 979, 1192
HphI	GGTGA	4 cut(s)	503, 592, 983, 1007
Hpy166II	GTNNAC	5 cut(s)	25, 175, 508, 720, 1165
Hpy188I	TCNGA	4 cut(s)	264, 709, 769, 1104
Hpy188III	TCNNGA	5 cut(s)	53, 431, 460, 864, 983
Hpy8I	GTNNAC	5 cut(s)	25, 175, 508, 720, 1165
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	404, 540, 992
HpyCH4III	ACNGT	2 cut(s)	70, 714
HpyCH4IV	ACGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 926, 1185
HpyF3I	CTNAG	3 cut(s)	204, 756, 1219
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	463, 561, 650, 775, 904, 1054
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	526, 562, 597, 1010, 1107
LmnI	GCTCC	3 cut(s)	277, 1066, 1148
Lsp1109I	GCAGC	6 cut(s)	319, 499, 602, 820, 929, 1017
LweI	GCATC	3 cut(s)	64, 344, 1108
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	5 cut(s)	528, 564, 599, 1012, 1109
MboI	GATC	5 cut(s)	526, 562, 597, 1010, 1107
MboII	GAAGA	6 cut(s)	146, 359, 368, 442, 819, 986
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	376
MluCI	AATT	5 cut(s)	78, 135, 182, 286, 496
MluNI	TGGCCA	1 cut(s)	376
MlyI	GAGTC	3 cut(s)	310, 431, 833
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	60, 188, 427, 1017, 1098
Mox20I	TGGCCA	1 cut(s)	376
Mph1103I	ATGCAT	1 cut(s)	1129
MroXI	GAANNNNTTC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	376
MseI	TTAA	2 cut(s)	537, 966
MslI	CAYNNNNRTG	2 cut(s)	687, 1200
Msp20I	TGGCCA	1 cut(s)	376
MspA1I	CMGCKG	3 cut(s)	145, 615, 1008
MspR9I	CCNGG	1 cut(s)	838
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	258, 682
MvaI	CCWGG	1 cut(s)	838
MwoI	GCNNNNNNNGC	3 cut(s)	166, 926, 1185
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	5 cut(s)	526, 562, 597, 1010, 1107
NlaIII	CATG	6 cut(s)	463, 561, 650, 775, 904, 1054
NlaIV	GGNNCC	2 cut(s)	528, 1068
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	1129
NspI	RCATGY	3 cut(s)	561, 904, 1054
PagI	TCATGA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	1027
PciI	ACATGT	1 cut(s)	1050
PcsI	WCGNNNNNNNCGW	1 cut(s)	1019
PctI	GAATGC	2 cut(s)	258, 682
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	4 cut(s)	423, 764, 979, 1192
PkrI	GCNGC	6 cut(s)	334, 514, 617, 835, 919, 1007
PleI	GAGTC	3 cut(s)	309, 431, 832
PpsI	GAGTC	3 cut(s)	309, 431, 832
PscI	ACATGT	1 cut(s)	1050
PsiI	TTATAA	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	836
PspN4I	GGNNCC	2 cut(s)	528, 1068
PspPI	GGNCC	1 cut(s)	895
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	615
RsaI	GTAC	3 cut(s)	273, 719, 1055
RsaNI	GTAC	3 cut(s)	272, 718, 1054
RseI	CAYNNNNRTG	2 cut(s)	687, 1200
SaqAI	TTAA	2 cut(s)	537, 966
SatI	GCNGC	6 cut(s)	333, 513, 616, 834, 918, 1006
Sau3AI	GATC	5 cut(s)	526, 562, 597, 1010, 1107
Sau96I	GGNCC	1 cut(s)	895
SchI	GAGTC	3 cut(s)	310, 431, 833
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	64, 344, 1108
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	895
SmiMI	CAYNNNNRTG	2 cut(s)	687, 1200
Sse9I	AATT	5 cut(s)	78, 135, 182, 286, 496
SseBI	AGGCCT	1 cut(s)	1027
SsiI	CCGC	4 cut(s)	143, 169, 1008, 1114
SspI	AATATT	2 cut(s)	406, 958
SspMI	CTAG	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	1027
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	2 cut(s)	646, 743
TaaI	ACNGT	2 cut(s)	70, 714
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	72
TasI	AATT	5 cut(s)	78, 135, 182, 286, 496
TatI	WGTACW	2 cut(s)	271, 717
TfiI	GAWTC	4 cut(s)	423, 764, 979, 1192
Tru1I	TTAA	2 cut(s)	537, 966
Tru9I	TTAA	2 cut(s)	537, 966
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	6 cut(s)	332, 512, 615, 833, 917, 1005
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	299, 448, 476
TspRI	CASTG	1 cut(s)	727
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	895
XapI	RAATTY	2 cut(s)	182, 286
XceI	RCATGY	3 cut(s)	561, 904, 1054
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.