Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

604430 .. 606423

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAATATGCTATTCAGTTGGCGAAGTCTGGTGATAAAATGGTAGTCAATGCTGCAGTTATAGTAGATCCTTCAGTTAAACAGGTAATTACTACTGCATGTGATCAAACTTGCTCTTGGTATACTCCTGCGAACAACACCACCCTTGAAACATACTGCTTTGAAAAGACAGAAGCTTCTGTTTCCCAGAGCCAATCAGATGGAGTATTCAGCTATGAAACTCTGCATTCAAACAGTTTGCCACATTTTCCAAAACAATTAAATACTGGTGTTTGTTGTTTATATCCATGGGGATGGGCTGAGCAACAATCAGACACTAATTCCTGCTCTTGGCACCCTTTACGTCATGCTGCTATTGTTGCTATTGAATCTTCTGCTGCCAGGGACATACATCTTTTCCCCAGTTTGGGGAAAATCCAAGATAAGTATGCTGAAACGGAGCACATACACTCTTCTTCTGCAGGCTCTCCAGCCAAAAGACAAAAGACCCATTCTACAAAAGTTAATGATGAGGCTCATCTGGACAGTAATGATGAAGGTTCCAGTTCTTTATCAGTGAGACCTTATCTATGTACAGGTTTTGACATTTACCTTGCTTGGGAGCCCTGCATAATGTGTGCAATGGCACTTGTGCATCAAAGAATTAGGCGTATATTCTTTGCTTTTCCGAACCCAAATGCAGGGGCATTGGGCACTGTTCACAGACTACAAGGGGAAAGAAGCTTAAACCATCATTATGCTGTATTTAGGGTCTTGGTTCCTGAAGAAGTCCTTAGTAGGGATGAAACTGCGGCTGCTGAGTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

269

Amino Acids

29.88

Weight (kDa)

6.09

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	57, 783
AfaI	GTAC	2 cut(s)	574, 803
AfiI	CCNNNNNNNGG	7 cut(s)	330, 406, 407, 408, 598, 680, 778
AgsI	TTSAA	4 cut(s)	149, 164, 231, 368
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	176, 213, 723
AluI	AGCT	3 cut(s)	176, 213, 723
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	553
AlwI	GGATC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	53, 350, 377, 794
AsuHPI	GGTGA	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	40, 337, 364, 781
BccI	CCATC	3 cut(s)	194, 288, 738
BciT130I	CCWGG	1 cut(s)	382
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	553
BfmI	CTRYAG	2 cut(s)	54, 459
BisI	GCNGC	5 cut(s)	54, 351, 378, 792, 795
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	5 cut(s)	55, 352, 379, 793, 796
Bme1390I	CCNGG	1 cut(s)	382
BmiI	GGNNCC	4 cut(s)	335, 541, 603, 759
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	2 cut(s)	287, 381
Bsc4I	CCNNNNNNNGG	7 cut(s)	330, 406, 407, 408, 598, 680, 778
Bse1I	ACTGG	3 cut(s)	271, 402, 543
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	287, 381
BseGI	GGATG	2 cut(s)	299, 787
BseLI	CCNNNNNNNGG	7 cut(s)	330, 406, 407, 408, 598, 680, 778
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	291, 789
BseNI	ACTGG	3 cut(s)	271, 402, 543
BseSI	GKGCMC	1 cut(s)	695
BseXI	GCAGC	4 cut(s)	40, 337, 364, 781
BshNI	GGYRCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	7 cut(s)	330, 406, 407, 408, 598, 680, 778
BsmAI	GTCTC	1 cut(s)	553
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	553
Bsp1286I	GDGCHC	3 cut(s)	444, 606, 695
Bsp1407I	TGTACA	1 cut(s)	572
Bsp143I	GATC	2 cut(s)	67, 103
Bsp1720I	GCTNAGC	1 cut(s)	300
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	1 cut(s)	791
BspCNI	CTCAG	2 cut(s)	292, 790
BspLI	GGNNCC	4 cut(s)	335, 541, 603, 759
BspMAI	CTGCAG	2 cut(s)	58, 463
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	627
BsrGI	TGTACA	1 cut(s)	572
BsrI	ACTGG	3 cut(s)	271, 402, 543
BssECI	CCNNGG	2 cut(s)	287, 381
BssMI	GATC	2 cut(s)	67, 103
BssNAI	GTATAC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	287
Bst1107I	GTATAC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	3 cut(s)	236, 527, 697
Bst6I	CTCTTC	1 cut(s)	457
BstAUI	TGTACA	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	300, 773, 798
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	299, 787
BstKTI	GATC	2 cut(s)	70, 106
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	2 cut(s)	67, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	2 cut(s)	54, 459
BstSLI	GKGCMC	1 cut(s)	695
BstV1I	GCAGC	4 cut(s)	40, 337, 364, 781
BstX2I	RGATCY	1 cut(s)	67
BstXI	CCANNNNNNTGG	2 cut(s)	200, 294
BstYI	RGATCY	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	299, 787
BtsIMutI	CAGTG	2 cut(s)	561, 693
Cac8I	GCNNGC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	573, 802
CviAII	CATG	3 cut(s)	99, 288, 347
CviQI	GTAC	2 cut(s)	573, 802
DdeI	CTNAG	3 cut(s)	300, 773, 798
DpnI	GATC	2 cut(s)	69, 105
DpnII	GATC	2 cut(s)	67, 103
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	57, 783
EcoRII	CCWGG	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	3 cut(s)	102, 291, 350
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	98, 287, 346
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	5 cut(s)	54, 351, 378, 792, 795
FokI	GGATG	2 cut(s)	306, 794
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	5 cut(s)	54, 351, 378, 792, 795
GluI	GCNGC	5 cut(s)	54, 351, 378, 792, 795
GsuI	CTGGAG	1 cut(s)	453
Hin1II	CATG	3 cut(s)	102, 291, 350
HindIII	AAGCTT	2 cut(s)	174, 721
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	123, 700
Hpy188I	TCNGA	3 cut(s)	199, 313, 669
Hpy188III	TCNNGA	2 cut(s)	521, 761
Hpy8I	GTNNAC	2 cut(s)	123, 700
HpyAV	CCTTC	2 cut(s)	81, 530
HpyCH4III	ACNGT	3 cut(s)	236, 527, 697
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	8 cut(s)	56, 98, 226, 461, 609, 620, 634, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	3 cut(s)	300, 773, 798
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	102, 291, 350
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	67, 103
LmnI	GCTCC	2 cut(s)	439, 601
Lsp1109I	GCAGC	4 cut(s)	40, 337, 364, 781
LweI	GCATC	1 cut(s)	643
MaeII	ACGT	1 cut(s)	343
MalI	GATC	2 cut(s)	69, 105
MboI	GATC	2 cut(s)	67, 103
MboII	GAAGA	4 cut(s)	363, 444, 447, 776
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	3 cut(s)	444, 606, 695
MluCI	AATT	4 cut(s)	87, 257, 319, 642
MnlI	CCTC	1 cut(s)	505
MseI	TTAA	4 cut(s)	78, 260, 504, 725
MslI	CAYNNNNRTG	2 cut(s)	292, 735
MspR9I	CCNGG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	2 cut(s)	67, 103
NlaIII	CATG	3 cut(s)	102, 291, 350
NlaIV	GGNNCC	4 cut(s)	335, 541, 603, 759
NspI	RCATGY	1 cut(s)	102
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	5 cut(s)	55, 352, 379, 793, 796
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	4 cut(s)	335, 541, 603, 759
PstI	CTGCAG	2 cut(s)	58, 463
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	574, 803
RsaNI	GTAC	2 cut(s)	573, 802
RseI	CAYNNNNRTG	2 cut(s)	292, 735
SaqAI	TTAA	4 cut(s)	78, 260, 504, 725
SatI	GCNGC	5 cut(s)	54, 351, 378, 792, 795
Sau3AI	GATC	2 cut(s)	67, 103
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	3 cut(s)	444, 606, 695
SetI	ASST	9 cut(s)	87, 178, 215, 346, 541, 565, 580, 594, 725
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	2 cut(s)	54, 459
SmiMI	CAYNNNNRTG	2 cut(s)	292, 735
Sse9I	AATT	4 cut(s)	87, 257, 319, 642
SsiI	CCGC	1 cut(s)	791
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	3 cut(s)	236, 527, 697
TaiI	ACGT	1 cut(s)	346
TasI	AATT	4 cut(s)	87, 257, 319, 642
TatI	WGTACW	2 cut(s)	572, 801
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	4 cut(s)	78, 260, 504, 725
Tru9I	TTAA	4 cut(s)	78, 260, 504, 725
TscAI	CASTG	2 cut(s)	561, 700
TseI	GCWGC	4 cut(s)	53, 350, 377, 794
TspDTI	ATGAA	4 cut(s)	17, 231, 549, 798
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	561, 700
XceI	RCATGY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.