Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

366868 .. 372410

Gene Structure 5543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG002300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTTCTTGACAGGAAGGACTCAGTTATCCGTGATCTTATGTTTAGCTTCTGAAATTGGTAATCCGTTGGAGAGCATACCCCACGATGTACAGGAGCTTATGAATTCCTACCAGTTGAGTCCTTTTATCACAAAAGTCTGCAACTATGCAGCATTATCAAAAGAAGAGTGGGAGGAACAATGCAAGCTATGGCCAACATCTTATCATCCCCCAACCTATAATATCGATGGCATTACTGGATTCAGTGAAGAGGACTCACAGTCAGTGTTTGGCTTTATGAAATATGCTATTCAGTTGGCGAAGTCTGGTGATAAAATGGTAGTCAATGCTGCAGTTATAGTAGATCCTTCAGTTAAACAGGTAATTACTACTGCATGTGATCAAACTTGCTCTTGGTATACTCCTGCGAACAACACCACCCTTGAAACATACTGCTTTGAAAAGACAGAAGCTTCTGTTTCCCAGAGCCAATCAGATGGAGTATTCAGCTATGAAACTCTGCATTCAAACAGTTTGCCACATTTTCCAAAACAATTAAATACTGGTGTTTGTTGTTTATATCCATGGGGATGGGCTGAGCAACAATCAGACACTAATTCCTGCTCTTGGCACCCTTTACGTCATGCTGCTATTGTTGCTATTGAATCTTCTGCTGCCAGGGACATACATCTTTTCCCCAGTTTGGGGAAAATCCAAGATAAGTATGCTGAAACGGAGCACATACACTCTTCTTCTGCAGGCTCTCCAGCCAAAAGACAAAAGACCCATTCTACAAAAGTTAATGATGAGGCTCATCTGGACAGTAATGATGAAGGTTCCAGTTCTTTATCAGTGAGACCTTATCTATGTACAGGTTTTGACATTTACCTTGCTTGGGAGCCCTGCATAATGTGTGCAATGGCACTTGTGCATCAAAGAATTAGGCGTATATTCTTTGCTTTTCCGAACCCAAATGCAGGGGCATTGGGCACTGTTCACAGACTACAAGGGGAAAGAAGCTTAAACCATCACTATGCTGTATTTAGGGTCTTGGTTCCTGAAGAAGTCCTTAGTAGGGATGAAACTGCGGCTGCTGAGTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

361

Amino Acids

40.29

Weight (kDa)

5.48

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	1 cut(s)	1067
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	2 cut(s)	333, 1059
AfaI	GTAC	3 cut(s)	90, 850, 1079
AfiI	CCNNNNNNNGG	7 cut(s)	606, 682, 683, 684, 874, 956, 1054
AgsI	TTSAA	4 cut(s)	425, 440, 507, 644
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	656
AluBI	AGCT	6 cut(s)	47, 97, 187, 452, 489, 999
AluI	AGCT	6 cut(s)	47, 97, 187, 452, 489, 999
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	5 cut(s)	149, 329, 626, 653, 1070
ApoI	RAATTY	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	971
BalI	TGGCCA	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	882
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	5 cut(s)	161, 316, 613, 640, 1057
BccI	CCATC	4 cut(s)	221, 470, 564, 1014
BciT130I	CCWGG	1 cut(s)	658
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	829
BfmI	CTRYAG	2 cut(s)	330, 735
BisI	GCNGC	6 cut(s)	150, 330, 627, 654, 1068, 1071
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	6 cut(s)	151, 331, 628, 655, 1069, 1072
Bme1390I	CCNGG	1 cut(s)	658
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmiI	GGNNCC	4 cut(s)	611, 817, 879, 1035
BmrFI	CCNGG	1 cut(s)	658
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	1 cut(s)	919
BmuI	ACTGGG	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	2 cut(s)	563, 657
Bsc4I	CCNNNNNNNGG	7 cut(s)	606, 682, 683, 684, 874, 956, 1054
Bse1I	ACTGG	5 cut(s)	112, 241, 547, 678, 819
Bse3DI	GCAATG	1 cut(s)	903
BseBI	CCWGG	1 cut(s)	658
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	563, 657
BseGI	GGATG	3 cut(s)	205, 575, 1063
BseLI	CCNNNNNNNGG	7 cut(s)	606, 682, 683, 684, 874, 956, 1054
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	3 cut(s)	35, 567, 1065
BseNI	ACTGG	5 cut(s)	112, 241, 547, 678, 819
BseSI	GKGCMC	1 cut(s)	971
BseXI	GCAGC	5 cut(s)	161, 316, 613, 640, 1057
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	7 cut(s)	606, 682, 683, 684, 874, 956, 1054
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	193
Bso31I	GGTCTC	1 cut(s)	829
Bsp1286I	GDGCHC	3 cut(s)	720, 882, 971
Bsp1407I	TGTACA	2 cut(s)	88, 848
Bsp143I	GATC	3 cut(s)	33, 343, 379
Bsp1720I	GCTNAGC	1 cut(s)	576
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	1 cut(s)	1067
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	34, 568, 1066
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	4 cut(s)	611, 817, 879, 1035
BspMAI	CTGCAG	2 cut(s)	334, 739
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	609
BspTNI	GGTCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	903
BsrGI	TGTACA	2 cut(s)	88, 848
BsrI	ACTGG	5 cut(s)	112, 241, 547, 678, 819
BssECI	CCNNGG	2 cut(s)	563, 657
BssMI	GATC	3 cut(s)	33, 343, 379
BssNAI	GTATAC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	563
Bst1107I	GTATAC	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	658
Bst4CI	ACNGT	4 cut(s)	261, 512, 803, 973
Bst6I	CTCTTC	3 cut(s)	159, 243, 733
BstAUI	TGTACA	2 cut(s)	88, 848
BstC8I	GCNNGC	2 cut(s)	185, 739
BstDEI	CTNAG	4 cut(s)	21, 576, 1049, 1074
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	3 cut(s)	205, 575, 1063
BstKTI	GATC	3 cut(s)	36, 346, 382
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	3 cut(s)	33, 343, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	1 cut(s)	658
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	656
BstSFI	CTRYAG	2 cut(s)	330, 735
BstSLI	GKGCMC	1 cut(s)	971
BstV1I	GCAGC	5 cut(s)	161, 316, 613, 640, 1057
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	2 cut(s)	476, 570
BstYI	RGATCY	1 cut(s)	343
BstZ17I	GTATAC	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	193
BsuTUI	ATCGAT	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	563
BtsCI	GGATG	3 cut(s)	205, 575, 1063
BtsIMutI	CAGTG	4 cut(s)	250, 270, 837, 969
Cac8I	GCNNGC	2 cut(s)	185, 739
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	89, 849, 1078
CviAII	CATG	3 cut(s)	375, 564, 623
CviQI	GTAC	3 cut(s)	89, 849, 1078
DdeI	CTNAG	4 cut(s)	21, 576, 1049, 1074
DpnI	GATC	3 cut(s)	35, 345, 381
DpnII	GATC	3 cut(s)	33, 343, 379
DriI	GACNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	3 cut(s)	159, 243, 733
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	3 cut(s)	159, 243, 733
Eco130I	CCWWGG	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	882
Eco31I	GGTCTC	1 cut(s)	829
Eco57I	CTGAAG	2 cut(s)	333, 1059
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	656
EcoT14I	CCWWGG	1 cut(s)	563
EcoT38I	GRGCYC	1 cut(s)	882
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	3 cut(s)	378, 567, 626
FalI	AAGNNNNNCTT	2 cut(s)	1032, 1064
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	3 cut(s)	374, 563, 622
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	6 cut(s)	150, 330, 627, 654, 1068, 1071
FokI	GGATG	3 cut(s)	192, 582, 1070
FriOI	GRGCYC	1 cut(s)	882
Fsp4HI	GCNGC	6 cut(s)	150, 330, 627, 654, 1068, 1071
GluI	GCNGC	6 cut(s)	150, 330, 627, 654, 1068, 1071
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	378, 567, 626
HindIII	AAGCTT	2 cut(s)	450, 997
HinfI	GANTC	5 cut(s)	19, 118, 240, 254, 644
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	399, 976
Hpy188I	TCNGA	4 cut(s)	52, 475, 589, 945
Hpy188III	TCNNGA	3 cut(s)	7, 797, 1037
Hpy8I	GTNNAC	2 cut(s)	399, 976
HpyAV	CCTTC	3 cut(s)	9, 357, 806
HpyCH4III	ACNGT	4 cut(s)	261, 512, 803, 973
HpyCH4IV	ACGT	1 cut(s)	619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	4 cut(s)	21, 576, 1049, 1074
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	378, 567, 626
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	33, 343, 379
LmnI	GCTCC	3 cut(s)	94, 715, 877
Lsp1109I	GCAGC	5 cut(s)	161, 316, 613, 640, 1057
LweI	GCATC	1 cut(s)	919
MaeII	ACGT	1 cut(s)	619
MalI	GATC	3 cut(s)	35, 345, 381
MboI	GATC	3 cut(s)	33, 343, 379
MboII	GAAGA	6 cut(s)	176, 260, 639, 720, 723, 1052
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	3 cut(s)	720, 882, 971
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	6 cut(s)	54, 103, 363, 533, 595, 918
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	3 cut(s)	13, 127, 248
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	166, 244, 781
Mox20I	TGGCCA	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	4 cut(s)	354, 536, 780, 1001
MslI	CAYNNNNRTG	2 cut(s)	568, 1011
Msp20I	TGGCCA	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	658
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	658
MwoI	GCNNNNNNNGC	1 cut(s)	635
NcoI	CCATGG	1 cut(s)	563
NdeII	GATC	3 cut(s)	33, 343, 379
NlaIII	CATG	3 cut(s)	378, 567, 626
NlaIV	GGNNCC	4 cut(s)	611, 817, 879, 1035
NspI	RCATGY	1 cut(s)	378
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	240, 644
PkrI	GCNGC	6 cut(s)	151, 331, 628, 655, 1069, 1072
PleI	GAGTC	3 cut(s)	13, 126, 248
PpsI	GAGTC	3 cut(s)	13, 126, 248
Psp6I	CCWGG	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	656
PspN4I	GGNNCC	4 cut(s)	611, 817, 879, 1035
PstI	CTGCAG	2 cut(s)	334, 739
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	3 cut(s)	90, 850, 1079
RsaNI	GTAC	3 cut(s)	89, 849, 1078
RseI	CAYNNNNRTG	2 cut(s)	568, 1011
SaqAI	TTAA	4 cut(s)	354, 536, 780, 1001
SatI	GCNGC	6 cut(s)	150, 330, 627, 654, 1068, 1071
Sau3AI	GATC	3 cut(s)	33, 343, 379
SchI	GAGTC	3 cut(s)	13, 127, 248
ScrFI	CCNGG	1 cut(s)	658
SduI	GDGCHC	3 cut(s)	720, 882, 971
SfaNI	GCATC	1 cut(s)	919
SfcI	CTRYAG	2 cut(s)	330, 735
SmiMI	CAYNNNNRTG	2 cut(s)	568, 1011
Sse9I	AATT	6 cut(s)	54, 103, 363, 533, 595, 918
SsiI	CCGC	1 cut(s)	1067
StyD4I	CCNGG	1 cut(s)	656
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	4 cut(s)	261, 512, 803, 973
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	1 cut(s)	225
TasI	AATT	6 cut(s)	54, 103, 363, 533, 595, 918
TatI	WGTACW	3 cut(s)	88, 848, 1077
TauI	GCSGC	1 cut(s)	1070
TfiI	GAWTC	2 cut(s)	240, 644
Tru1I	TTAA	4 cut(s)	354, 536, 780, 1001
Tru9I	TTAA	4 cut(s)	354, 536, 780, 1001
TscAI	CASTG	4 cut(s)	250, 270, 837, 976
TseI	GCWGC	5 cut(s)	149, 329, 626, 653, 1070
TspDTI	ATGAA	5 cut(s)	116, 293, 507, 825, 1074
TspGWI	ACGGA	3 cut(s)	19, 54, 728
TspRI	CASTG	4 cut(s)	250, 270, 837, 976
XapI	RAATTY	1 cut(s)	103
XceI	RCATGY	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.