Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

475787 .. 486606

Gene Structure 10820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1001500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAGGAGATGTGGCAGATAGTCCACATCCCTGACAACCCCCCAATCCCTCCCGACCAACAACCTACCGTCGATGCAATTGCTTCACTTATAGACCCTTTATTTGCCAACACTCTCGTAAGGCGTTTGAACCAAATTGCACCGCTAGAAAATCTTCGGCACGTCAAGCGGGTGCACAAGAAATTTGTTCAAGGAGGAAAAACTCAGTTGTCTGTGATATTATGTCTAGCTTCTCAAAATGGTAATCAGTTGGACAGCATTCAGAATGATGTACAGGAGCTGATGAATTCCTACCAGTTGAGTCCTTTTATCACAAAAGTCTGCAAGTATGCTGCATCATCAAAAGAAGAGTGGGAAGAACAATGCAAGCTATGGCCAACATCTTATCATCCCCCAACTTATAATATTGAAGGCATTACTGGATTCAGTCAAGAGGACTCACAGTCAGTATTCAGCTTCATGAAGTATGCCATTCAGTTGGCAAAGTCTGGTGATAATTTGGAAGTCAACGCTGCAGTTATAGTGGATCCTTCAGTTAAACAGGTTATTGCGAAAGCATGTGATCAAACTTGTTCTTGCTATAATCCAAAAAACGAGATCACCCTTGAAACCAGCTGCAGTGAAAAGCTGGAAACTTCTGTTTGCCATGGCATTTCAGGTGGTGCATTGAGCTGTAAAGAGCATTCAAACGGCTTTCCAGCTAAATCAGAACATTTGTACACCGGTGTTTCTTGTTTATGTCCTTGGGGATGGGCTGAGCAAGAATCAGACATGAGTTTGCGTTATTGCCACCCTTTACGCCACGCTTCCATTGTTGCTATTGAGTCTTCTGCTGCCAGGGACAGGCTTCTTTTCCCCAGTTCGGGAAAAACGCAAGATAATAAGTCATTTGAAATGGACCACATGCAGTCTTGTTCAGCAGCCTCTCCGGCAAAGAGACAAAAGACCAACTCCACAAATATTCAGGTTAATTATGGTGAAGACAATCTGGACTTGAATGGTGAAGGTTGCAGCAGATCGCTATCAGCAAGGCCTTATCTATGCACAGGTTTTGACATGTACCTTGTGTGGGAGCCGTGCATAATGTGTGCAATGGCACTTGTGCATCAGAGGATCAGGCGGATATTCTTTGCATATCCAAACCCAAAAGCAGGAGCATTGGGGAGTGTCCACAGACTACAAGGCCAAAGAAGCTTGAATCATCACTATGCTGTTTTCAGGGTCTTAGTAGGGACGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

415

Amino Acids

46.17

Weight (kDa)

6.39

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AciI	CCGC	3 cut(s)	143, 169, 1120
AclWI	GGATC	3 cut(s)	521, 534, 1121
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	182, 286
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	3 cut(s)	273, 719, 1061
AfiI	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1069, 1151
AflIII	ACRYGT	1 cut(s)	1056
AgeI	ACCGGT	1 cut(s)	722
AgsI	TTSAA	8 cut(s)	130, 191, 410, 608, 687, 893, 997, 1198
AhdI	GACNNNNNGTC	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	836
AluBI	AGCT	9 cut(s)	230, 280, 370, 456, 615, 628, 672, 701, 1194
AluI	AGCT	9 cut(s)	230, 280, 370, 456, 615, 628, 672, 701, 1194
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	931
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	3 cut(s)	521, 534, 1121
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	3 cut(s)	374, 1031, 1183
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	6 cut(s)	332, 512, 615, 833, 920, 1011
ApoI	RAATTY	2 cut(s)	182, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AsiGI	ACCGGT	1 cut(s)	722
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	898
AsuHPI	GGTGA	4 cut(s)	503, 592, 989, 1013
AvaII	GGWCC	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	526
BbsI	GAAGAC	2 cut(s)	819, 987
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	6 cut(s)	319, 499, 602, 820, 932, 1023
BccI	CCATC	1 cut(s)	744
BceAI	ACGGC	2 cut(s)	706, 1060
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	838
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	931
BfaI	CTAG	2 cut(s)	146, 227
BfmI	CTRYAG	2 cut(s)	513, 616
BglI	GCCNNNNNGGC	1 cut(s)	929
BisI	GCNGC	6 cut(s)	333, 513, 616, 834, 921, 1012
BlpI	GCTNAGC	1 cut(s)	756
BlsI	GCNGC	6 cut(s)	334, 514, 617, 835, 922, 1013
Bme1390I	CCNGG	1 cut(s)	838
Bme18I	GGWCC	1 cut(s)	898
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	2 cut(s)	528, 1074
BmrFI	CCNGG	1 cut(s)	838
BmrI	ACTGGG	1 cut(s)	852
BmsI	GCATC	3 cut(s)	64, 344, 1114
BmuI	ACTGGG	1 cut(s)	852
BpiI	GAAGAC	2 cut(s)	819, 987
Bpu1102I	GCTNAGC	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	1021
BsaJI	CCNNGG	3 cut(s)	646, 743, 837
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1069, 1151
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	3 cut(s)	295, 424, 858
Bse3DI	GCAATG	1 cut(s)	1098
Bse8I	GATNNNNATC	1 cut(s)	1021
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	3 cut(s)	646, 743, 837
BseGI	GGATG	3 cut(s)	27, 388, 755
BseJI	GATNNNNATC	1 cut(s)	1021
BseLI	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1069, 1151
BseMI	GCAATG	1 cut(s)	1098
BseMII	CTCAG	2 cut(s)	218, 747
BseNI	ACTGG	3 cut(s)	295, 424, 858
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	6 cut(s)	319, 499, 602, 820, 932, 1023
BshFI	GGCC	3 cut(s)	376, 1033, 1185
BshTI	ACCGGT	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	723, 929
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	5 cut(s)	843, 862, 863, 1069, 1151
BsmAI	GTCTC	1 cut(s)	931
BsmFI	GGGAC	1 cut(s)	854
BsmI	GAATGC	2 cut(s)	258, 682
BsnI	GGCC	3 cut(s)	376, 1033, 1185
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	2 cut(s)	271, 717
Bsp143I	GATC	5 cut(s)	526, 562, 597, 1016, 1113
Bsp1720I	GCTNAGC	1 cut(s)	756
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	3 cut(s)	143, 169, 1120
BspANI	GGCC	3 cut(s)	376, 1033, 1185
BspCNI	CTCAG	2 cut(s)	217, 748
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	528, 1074
BspMAI	CTGCAG	2 cut(s)	517, 620
BspPI	GGATC	3 cut(s)	521, 534, 1121
BsrDI	GCAATG	1 cut(s)	1098
BsrFI	RCCGGY	1 cut(s)	722
BsrGI	TGTACA	2 cut(s)	271, 717
BsrI	ACTGG	3 cut(s)	295, 424, 858
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	646, 743, 837
BssMI	GATC	5 cut(s)	526, 562, 597, 1016, 1113
BssT1I	CCWWGG	2 cut(s)	646, 743
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	2 cut(s)	70, 444
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	2 cut(s)	271, 717
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	204, 756, 1225
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	3 cut(s)	27, 388, 755
BstKTI	GATC	5 cut(s)	529, 565, 600, 1019, 1116
BstMAI	GTCTC	1 cut(s)	931
BstMBI	GATC	5 cut(s)	526, 562, 597, 1016, 1113
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 929, 1191
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	3 cut(s)	561, 907, 1060
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	2 cut(s)	513, 616
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	6 cut(s)	319, 499, 602, 820, 932, 1023
BstV2I	GAAGAC	2 cut(s)	819, 987
BstX2I	RGATCY	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	376, 1033, 1185
BtgI	CCRYGG	1 cut(s)	646
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	27, 388, 755
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	368
CaiI	CAGNNNCTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	898
Csp6I	GTAC	3 cut(s)	272, 718, 1060
CspAI	ACCGGT	1 cut(s)	722
CviAII	CATG	6 cut(s)	460, 558, 647, 772, 904, 1057
CviQI	GTAC	3 cut(s)	272, 718, 1060
DdeI	CTNAG	3 cut(s)	204, 756, 1225
DpnI	GATC	5 cut(s)	528, 564, 599, 1018, 1115
DpnII	GATC	5 cut(s)	526, 562, 597, 1016, 1113
DriI	GACNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	1135
Eco130I	CCWWGG	2 cut(s)	646, 743
Eco147I	AGGCCT	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	836
EcoT14I	CCWWGG	2 cut(s)	646, 743
ErhI	CCWWGG	2 cut(s)	646, 743
FaeI	CATG	6 cut(s)	463, 561, 650, 775, 907, 1060
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	6 cut(s)	459, 557, 646, 771, 903, 1056
FauI	CCCGC	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	6 cut(s)	333, 513, 616, 834, 921, 1012
FokI	GGATG	3 cut(s)	14, 375, 762
Fsp4HI	GCNGC	6 cut(s)	333, 513, 616, 834, 921, 1012
FspBI	CTAG	2 cut(s)	146, 227
GluI	GCNGC	6 cut(s)	333, 513, 616, 834, 921, 1012
HaeIII	GGCC	3 cut(s)	376, 1033, 1185
HapII	CCGG	2 cut(s)	723, 929
Hin1II	CATG	6 cut(s)	463, 561, 650, 775, 907, 1060
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	1192
HinfI	GANTC	6 cut(s)	301, 423, 437, 764, 824, 1198
HpaII	CCGG	2 cut(s)	723, 929
HphI	GGTGA	4 cut(s)	503, 592, 989, 1013
Hpy166II	GTNNAC	5 cut(s)	25, 175, 508, 720, 1171
Hpy188I	TCNGA	4 cut(s)	264, 709, 769, 1110
Hpy188III	TCNNGA	5 cut(s)	53, 431, 460, 864, 989
Hpy8I	GTNNAC	5 cut(s)	25, 175, 508, 720, 1171
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	404, 540, 998
HpyCH4III	ACNGT	2 cut(s)	70, 444
HpyCH4IV	ACGT	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 929, 1191
HpyF3I	CTNAG	3 cut(s)	204, 756, 1225
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	6 cut(s)	463, 561, 650, 775, 907, 1060
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	526, 562, 597, 1016, 1113
LmnI	GCTCC	3 cut(s)	277, 1072, 1154
Lsp1109I	GCAGC	6 cut(s)	319, 499, 602, 820, 932, 1023
LweI	GCATC	3 cut(s)	64, 344, 1114
MaeI	CTAG	2 cut(s)	146, 227
MaeII	ACGT	1 cut(s)	162
MalI	GATC	5 cut(s)	528, 564, 599, 1018, 1115
MboI	GATC	5 cut(s)	526, 562, 597, 1016, 1113
MboII	GAAGA	5 cut(s)	146, 359, 368, 819, 992
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	376
MluCI	AATT	6 cut(s)	78, 135, 182, 286, 496, 970
MluNI	TGGCCA	1 cut(s)	376
MlyI	GAGTC	3 cut(s)	310, 431, 833
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	60, 188, 427, 934, 1104
Mox20I	TGGCCA	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	376
MseI	TTAA	2 cut(s)	537, 969
MslI	CAYNNNNRTG	1 cut(s)	1206
Msp20I	TGGCCA	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	615
MspI	CCGG	2 cut(s)	723, 929
MspR9I	CCNGG	1 cut(s)	838
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	258, 682
MvaI	CCWGG	1 cut(s)	838
MwoI	GCNNNNNNNGC	3 cut(s)	166, 929, 1191
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	5 cut(s)	526, 562, 597, 1016, 1113
NlaIII	CATG	6 cut(s)	463, 561, 650, 775, 907, 1060
NlaIV	GGNNCC	2 cut(s)	528, 1074
NspI	RCATGY	3 cut(s)	561, 907, 1060
PagI	TCATGA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	1033
PciI	ACATGT	1 cut(s)	1056
PctI	GAATGC	2 cut(s)	258, 682
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	423, 764, 1198
PinAI	ACCGGT	1 cut(s)	722
PkrI	GCNGC	6 cut(s)	334, 514, 617, 835, 922, 1013
PleI	GAGTC	3 cut(s)	309, 431, 832
PpsI	GAGTC	3 cut(s)	309, 431, 832
PscI	ACATGT	1 cut(s)	1056
PsiI	TTATAA	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	836
PspN4I	GGNNCC	2 cut(s)	528, 1074
PspPI	GGNCC	1 cut(s)	898
PstI	CTGCAG	2 cut(s)	517, 620
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	615
RsaI	GTAC	3 cut(s)	273, 719, 1061
RsaNI	GTAC	3 cut(s)	272, 718, 1060
RseI	CAYNNNNRTG	1 cut(s)	1206
SaqAI	TTAA	2 cut(s)	537, 969
SatI	GCNGC	6 cut(s)	333, 513, 616, 834, 921, 1012
Sau3AI	GATC	5 cut(s)	526, 562, 597, 1016, 1113
Sau96I	GGNCC	1 cut(s)	898
SchI	GAGTC	3 cut(s)	310, 431, 833
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	64, 344, 1114
SfcI	CTRYAG	2 cut(s)	513, 616
SgrAI	CRCCGGYG	1 cut(s)	722
SinI	GGWCC	1 cut(s)	898
SmiMI	CAYNNNNRTG	1 cut(s)	1206
Sse9I	AATT	6 cut(s)	78, 135, 182, 286, 496, 970
SseBI	AGGCCT	1 cut(s)	1033
SsiI	CCGC	3 cut(s)	143, 169, 1120
SspI	AATATT	2 cut(s)	406, 961
SspMI	CTAG	2 cut(s)	146, 227
StuI	AGGCCT	1 cut(s)	1033
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	2 cut(s)	646, 743
TaaI	ACNGT	2 cut(s)	70, 444
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	72
TasI	AATT	6 cut(s)	78, 135, 182, 286, 496, 970
TatI	WGTACW	2 cut(s)	271, 717
TfiI	GAWTC	3 cut(s)	423, 764, 1198
Tru1I	TTAA	2 cut(s)	537, 969
Tru9I	TTAA	2 cut(s)	537, 969
TscAI	CASTG	1 cut(s)	625
TseI	GCWGC	6 cut(s)	332, 512, 615, 833, 920, 1011
TspDTI	ATGAA	3 cut(s)	299, 448, 476
TspRI	CASTG	1 cut(s)	625
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	898
XapI	RAATTY	2 cut(s)	182, 286
XceI	RCATGY	3 cut(s)	561, 907, 1060
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	2 cut(s)	146, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.