AT5G24670

Zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006791
Physical Location & Seq
Forward (+)
8447378 .. 8451569
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24670.5

Sequence Viewer

Length: 1203 bp
ATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTGTCACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCCAATACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAAAGGGTGAAGAAGAAGATTCTGCCAGATTGCGGTGAAACTCAGTTGACTGTCATCTTATGTCTAGCACCTGAGCACAACGATCAGTTGAGTGACATGCCACCTGATGTGCAGAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGCTGCGGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCCACCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTGCAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGCTGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATATGCATCATCTGCTCCTCGTGACATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAGGGGAAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTTGTCTGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGCATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATCTGTTTCCCAATCCATCCAAGATTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGATTCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGCAGAGAAGAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATTTTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAACGGATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTTCAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGACGCACTTAGACAAATGACCACGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dCMP_cyt_deam_1

Protein Analysis

400

Amino Acids

45.1

Weight (kDa)

5.68

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1079
AatII GACGTC 1 cut(s) 921
Acc36I ACCTGC 1 cut(s) 1079
AciI CCGC 4 cut(s) 201, 341, 728, 860
AclWI GGATC 4 cut(s) 287, 527, 858, 947
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 918
AfaI GTAC 2 cut(s) 974, 1018
AfiI CCNNNNNNNGG 3 cut(s) 200, 714, 1006
AgsI TTSAA 5 cut(s) 665, 791, 960, 1118, 1135
AjnI CCWGG 2 cut(s) 617, 707
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 4 cut(s) 277, 608, 935, 1100
AlwI GGATC 4 cut(s) 287, 527, 858, 947
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 1097
AoxI GGCC 3 cut(s) 380, 620, 968
ApeKI GCWGC 4 cut(s) 338, 518, 724, 1165
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 611, 1036
AspS9I GGNCC 1 cut(s) 621
AsuHPI GGTGA 3 cut(s) 45, 187, 215
AsuNHI GCTAGC 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 1097
BauI CACGAG 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 325, 505, 736, 1152
BccI CCATC 4 cut(s) 69, 410, 838, 1146
BceAI ACGGC 2 cut(s) 955, 1101
BciT130I CCWGG 2 cut(s) 619, 709
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 2 cut(s) 568, 844
BcoDI GTCTC 4 cut(s) 277, 608, 935, 1100
BfaI CTAG 5 cut(s) 87, 149, 233, 558, 606
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 1037
BfuAI ACCTGC 1 cut(s) 1079
BfuI GTATCC 1 cut(s) 355
BglII AGATCT 1 cut(s) 154
BisI GCNGC 5 cut(s) 339, 519, 725, 728, 1166
BlsI GCNGC 5 cut(s) 340, 520, 726, 729, 1167
Bme1390I CCNGG 2 cut(s) 619, 709
BmeT110I CYCGRG 1 cut(s) 1097
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 1 cut(s) 1011
BmrFI CCNGG 2 cut(s) 619, 709
BmsI GCATC 4 cut(s) 429, 590, 766, 1051
BmtI GCTAGC 1 cut(s) 90
BoxI GACNNNNGTC 1 cut(s) 1196
Bpu10I CCTNAGC 1 cut(s) 240
BsaBI GATNNNNATC 2 cut(s) 813, 849
BsaHI GRCGYC 1 cut(s) 918
BsaI GGTCTC 2 cut(s) 608, 1100
BsaJI CCNNGG 4 cut(s) 707, 777, 1083, 1194
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 714, 1006
Bse1I ACTGG 2 cut(s) 751, 988
Bse3DI GCAATG 1 cut(s) 719
Bse8I GATNNNNATC 2 cut(s) 813, 849
BseBI CCWGG 2 cut(s) 619, 709
BseDI CCNNGG 4 cut(s) 707, 777, 1083, 1194
BseGI GGATG 3 cut(s) 394, 757, 830
BseJI GATNNNNATC 2 cut(s) 813, 849
BseLI CCNNNNNNNGG 3 cut(s) 200, 714, 1006
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 2 cut(s) 224, 231
BseNI ACTGG 2 cut(s) 751, 988
BseRI GAGGAG 3 cut(s) 135, 452, 582
BseXI GCAGC 4 cut(s) 325, 505, 736, 1152
BsgI GTGCAG 2 cut(s) 299, 964
BshFI GGCC 3 cut(s) 382, 622, 970
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 1097
BsiSI CCGG 1 cut(s) 881
BslI CCNNNNNNNGG 3 cut(s) 200, 714, 1006
BsmAI GTCTC 4 cut(s) 277, 608, 935, 1100
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 3 cut(s) 382, 622, 970
Bso31I GGTCTC 2 cut(s) 608, 1100
BsoBI CYCGRG 1 cut(s) 1097
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 1016
Bsp143I GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 4 cut(s) 201, 341, 728, 860
BspANI GGCC 3 cut(s) 382, 622, 970
BspCNI CTCAG 2 cut(s) 223, 232
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 1011
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 1 cut(s) 1079
BspOI GCTAGC 1 cut(s) 90
BspPI GGATC 4 cut(s) 287, 527, 858, 947
BspTNI GGTCTC 2 cut(s) 608, 1100
BsrDI GCAATG 1 cut(s) 719
BsrGI TGTACA 1 cut(s) 1016
BsrI ACTGG 2 cut(s) 751, 988
BssECI CCNNGG 4 cut(s) 707, 777, 1083, 1194
BssMI GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
BssNI GRCGYC 1 cut(s) 918
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 777
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 2 cut(s) 619, 709
Bst4CI ACNGT 4 cut(s) 73, 220, 946, 1198
Bst6I CTCTTC 3 cut(s) 348, 802, 933
BstACI GRCGYC 1 cut(s) 918
BstAPI GCANNNNNTGC 1 cut(s) 587
BstAUI TGTACA 1 cut(s) 1016
BstC8I GCNNGC 2 cut(s) 88, 771
BstDEI CTNAG 4 cut(s) 210, 240, 764, 1181
BstDSI CCRYGG 3 cut(s) 777, 1083, 1194
BstF5I GGATG 3 cut(s) 394, 757, 830
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 2 cut(s) 611, 1036
BstKTI GATC 8 cut(s) 157, 253, 295, 535, 571, 847, 853, 955
BstMAI GTCTC 4 cut(s) 277, 608, 935, 1100
BstMBI GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNI CCWGG 2 cut(s) 619, 709
BstNSI RCATGY 2 cut(s) 268, 773
BstPAI GACNNNNGTC 1 cut(s) 1196
BstSCI CCNGG 2 cut(s) 617, 707
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 325, 505, 736, 1152
BstX2I RGATCY 2 cut(s) 154, 952
BstYI RGATCY 2 cut(s) 154, 952
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 3 cut(s) 382, 622, 970
BtgI CCRYGG 3 cut(s) 777, 1083, 1194
BtsCI GGATG 3 cut(s) 394, 757, 830
BtsI GCAGTG 2 cut(s) 528, 1155
BtsIMutI CAGTG 6 cut(s) 69, 528, 735, 758, 981, 1155
BveI ACCTGC 1 cut(s) 1079
Cac8I GCNNGC 2 cut(s) 88, 771
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 465
CfoI GCGC 2 cut(s) 611, 1036
Cfr13I GGNCC 1 cut(s) 621
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 2 cut(s) 973, 1017
CviAII CATG 9 cut(s) 15, 164, 265, 466, 601, 731, 770, 778, 854
CviQI GTAC 2 cut(s) 973, 1017
DdeI CTNAG 4 cut(s) 210, 240, 764, 1181
DpnI GATC 8 cut(s) 156, 252, 294, 534, 570, 846, 852, 954
DpnII GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
DraI TTTAAA 1 cut(s) 651
Eam1104I CTCTTC 3 cut(s) 348, 802, 933
EarI CTCTTC 3 cut(s) 348, 802, 933
EciI GGCGGA 1 cut(s) 849
Eco130I CCWWGG 1 cut(s) 777
Eco31I GGTCTC 2 cut(s) 608, 1100
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 1097
EcoO109I RGGNCCY 1 cut(s) 621
EcoRII CCWGG 2 cut(s) 617, 707
EcoT14I CCWWGG 1 cut(s) 777
EcoT22I ATGCAT 2 cut(s) 16, 583
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 9 cut(s) 18, 167, 268, 469, 604, 734, 773, 781, 857
FatI CATG 9 cut(s) 14, 163, 264, 465, 600, 730, 769, 777, 853
FbaI TGATCA 2 cut(s) 568, 844
Fnu4HI GCNGC 5 cut(s) 339, 519, 725, 728, 1166
FokI GGATG 3 cut(s) 381, 744, 817
Fsp4HI GCNGC 5 cut(s) 339, 519, 725, 728, 1166
FspBI CTAG 5 cut(s) 87, 149, 233, 558, 606
GlaI GCGC 2 cut(s) 610, 1035
GluI GCNGC 5 cut(s) 339, 519, 725, 728, 1166
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 3 cut(s) 382, 622, 970
HapII CCGG 1 cut(s) 881
HgaI GACGC 1 cut(s) 1184
HhaI GCGC 2 cut(s) 611, 1036
Hin1I GRCGYC 1 cut(s) 918
Hin1II CATG 9 cut(s) 18, 167, 268, 469, 604, 734, 773, 781, 857
Hin6I GCGC 2 cut(s) 609, 1034
HinP1I GCGC 2 cut(s) 609, 1034
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 8 cut(s) 5, 187, 285, 307, 703, 791, 875, 910
HpaII CCGG 1 cut(s) 881
HphI GGTGA 3 cut(s) 45, 187, 215
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 3 cut(s) 10, 702, 909
Hpy188III TCNNGA 6 cut(s) 149, 466, 596, 848, 914, 1099
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 5 cut(s) 54, 70, 546, 634, 966
HpyCH4III ACNGT 4 cut(s) 73, 220, 946, 1198
HpyCH4IV ACGT 1 cut(s) 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 4 cut(s) 210, 240, 764, 1181
HpySE526I ACGT 1 cut(s) 918
Hsp92I GRCGYC 1 cut(s) 918
Hsp92II CATG 9 cut(s) 18, 167, 268, 469, 604, 734, 773, 781, 857
HspAI GCGC 2 cut(s) 609, 1034
Ksp22I TGATCA 2 cut(s) 568, 844
Kzo9I GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
LmnI GCTCC 3 cut(s) 148, 595, 1009
Lsp1109I GCAGC 4 cut(s) 325, 505, 736, 1152
LweI GCATC 4 cut(s) 429, 590, 766, 1051
MaeI CTAG 5 cut(s) 87, 149, 233, 558, 606
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 3 cut(s) 51, 260, 596
MalI GATC 8 cut(s) 156, 252, 294, 534, 570, 846, 852, 954
MboI GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
MboII GAAGA 9 cut(s) 149, 164, 190, 193, 196, 365, 374, 789, 950
MflI RGATCY 2 cut(s) 154, 952
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 21, 742
MlyI GAGTC 3 cut(s) 279, 316, 919
MmeI TCCRAC 1 cut(s) 987
Mph1103I ATGCAT 2 cut(s) 16, 583
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 168, 650
MslI CAYNNNNRTG 2 cut(s) 325, 1143
MspI CCGG 1 cut(s) 881
MspR9I CCNGG 2 cut(s) 619, 709
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 2 cut(s) 619, 709
MwoI GCNNNNNNNGC 1 cut(s) 587
NcoI CCATGG 1 cut(s) 777
NdeII GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
NheI GCTAGC 1 cut(s) 86
NlaIII CATG 9 cut(s) 18, 167, 268, 469, 604, 734, 773, 781, 857
NlaIV GGNNCC 1 cut(s) 1011
NmuCI GTSAC 3 cut(s) 51, 260, 596
NsiI ATGCAT 2 cut(s) 16, 583
NspI RCATGY 2 cut(s) 268, 773
PaeI GCATGC 1 cut(s) 773
PagI TCATGA 1 cut(s) 465
PaqCI CACCTGC 1 cut(s) 1079
PctI GAATGC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 5 cut(s) 5, 187, 703, 791, 875
PkrI GCNGC 5 cut(s) 340, 520, 726, 729, 1167
PleI GAGTC 3 cut(s) 279, 315, 918
PpsI GAGTC 3 cut(s) 279, 315, 918
PshAI GACNNNNGTC 1 cut(s) 1196
Psp6I CCWGG 2 cut(s) 617, 707
PspGI CCWGG 2 cut(s) 617, 707
PspN4I GGNNCC 1 cut(s) 1011
PspPI GGNCC 1 cut(s) 621
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 2 cut(s) 154, 952
RsaI GTAC 2 cut(s) 974, 1018
RsaNI GTAC 2 cut(s) 973, 1017
RseI CAYNNNNRTG 2 cut(s) 325, 1143
SaqAI TTAA 2 cut(s) 168, 650
SatI GCNGC 5 cut(s) 339, 519, 725, 728, 1166
Sau3AI GATC 8 cut(s) 154, 250, 292, 532, 568, 844, 850, 952
Sau96I GGNCC 1 cut(s) 621
SchI GAGTC 3 cut(s) 279, 316, 919
ScrFI CCNGG 2 cut(s) 619, 709
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 4 cut(s) 429, 590, 766, 1051
SfcI CTRYAG 1 cut(s) 519
SmiMI CAYNNNNRTG 2 cut(s) 325, 1143
SphI GCATGC 1 cut(s) 773
Sse9I AATT 2 cut(s) 21, 742
SsiI CCGC 4 cut(s) 201, 341, 728, 860
SspMI CTAG 5 cut(s) 87, 149, 233, 558, 606
StyD4I CCNGG 2 cut(s) 617, 707
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 4 cut(s) 73, 220, 946, 1198
TaiI ACGT 1 cut(s) 921
TaqI TCGA 1 cut(s) 627
TasI AATT 2 cut(s) 21, 742
TatI WGTACW 1 cut(s) 1016
TauI GCSGC 1 cut(s) 730
TfiI GAWTC 5 cut(s) 5, 187, 703, 791, 875
Tru1I TTAA 2 cut(s) 168, 650
Tru9I TTAA 2 cut(s) 168, 650
TscAI CASTG 6 cut(s) 76, 528, 742, 758, 988, 1155
TseFI GTSAC 3 cut(s) 51, 260, 596
TseI GCWGC 4 cut(s) 338, 518, 724, 1165
Tsp45I GTSAC 3 cut(s) 51, 260, 596
TspDTI ATGAA 6 cut(s) 36, 378, 383, 454, 669, 1097
TspGWI ACGGA 1 cut(s) 1072
TspRI CASTG 6 cut(s) 76, 528, 742, 758, 988, 1155
XbaI TCTAGA 1 cut(s) 148
XceI RCATGY 2 cut(s) 268, 773
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 5 cut(s) 87, 149, 233, 558, 606
ZraI GACGTC 1 cut(s) 919
Zsp2I ATGCAT 2 cut(s) 16, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.