Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

394272 .. 400118

Gene Structure 5847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCTGTATCTAAGAAAGAACCGATGCTGGTGAACGAGAATTGGGAGATTGTGCATGTGCCAGACAAACCCCTAATCTCTCCAGACCAACAACCCACTGTGGATGTCATTGCTTCAATCATACACCCAAAAGTTGCCAACACTCTTGTAAGGCGTCTGAACCAAATAGCACAACTGGAAAATCTCCGGCATGTCAAGCGGGTGCACAAGAAATTTGTTCAAGGAGGAACAATTCAGTTATCCGTGATCTTATGTCTCGCTTCTGAAAATGGTAATCTGTTGGACAACATACCTCACGATGTACAGGAGCTTATGACTTCCTATCAGTTGAGTCCTTTTATCACAAAAGTCTGCAAGTATGCGGCATTATCAAAAGAAGAGTGGGAGGAACAATGCAAACTTTGGCCAACATCTTTTCATCCACCAACCTATAATATCAATGGCATTACTGGATTCGGTGAGGAGGATTCACAGTCAGTGGTTGGCTTCATGAAGTATGCTATTCAGCTGGCGAAATCTGGTCATAAGATGGTAGTCAATGCTGCAGTTATAATAGATCCTTCAGTTAAACAAGTAATTGCTACTGCATGTGATCAAACTTGCTCTTGGTATGCTCCTGCGAGCAAGACCACCCTTGAAACAGACTTCTCTAAGAAGACAGAAGCCTCTGTTTCCCAGAGCCAATCAGATGGAGTATTGAGCTATGAAACTCTGCATTCAAACAGTTTGCCATTATATACTGGTGTTTGTTGTTTATATCCTTGGCGATGGGCTGAGCAAAAACCAGATACTGATTCCTGCTCTTGGCATCCTTTACGTCATGCTGCTATTGTTGCTATTGAATCTTCTGCAGCCAGGGACATAAATCTTTTCCCCAGTTCGGGGAAAGTCCAAGATACATTTGCTGAGACAGGCTACACACAGTCTTCTTCTGTAGGCTCTCCCTCCAAAAGACAAAAGACCCATTCTACAAAAGTTCACGATGAGGCTCATCTGGACACTAATGATGACGTTTCCAGTTCTTTATCAGTGAGGCCTTACCTATGTACAGGTTTTGACATTTACCTTGCTTGGGAGCCCTGCATAATGTGTGCAATGGCACTTGTGCATCAAAGAATTAGGCGTATATTCTTTGCTTTTCCAAACCCAAATGCAGGGGCATTGGGAACTGTTCACAGACTACAAGGGGAAAGAAGCTTAAACCATCACTATGCTGTATTTCGGGTCATGGTTCCTGAAGAAGTCCTTAGTAGGGATGACGCTGCAACTGATGAGTATAACCGAGTGATCGACAGCCTGATAAAAAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

438

Amino Acids

48.8

Weight (kDa)

6.38

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AciI	CCGC	2 cut(s)	199, 362
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	546, 1257
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	2 cut(s)	303, 1048
AfiI	CCNNNNNNNGG	7 cut(s)	804, 880, 881, 882, 1072, 1154, 1252
AgsI	TTSAA	5 cut(s)	117, 221, 638, 720, 842
AjnI	CCWGG	1 cut(s)	854
AluBI	AGCT	4 cut(s)	310, 508, 702, 1197
AluI	AGCT	4 cut(s)	310, 508, 702, 1197
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	260, 902
Alw44I	GTGCAC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	2 cut(s)	404, 1034
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	4 cut(s)	542, 824, 851, 1262
ApoI	RAATTY	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	43, 470
BaeGI	GKGCMC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	1080
BbsI	GAAGAC	2 cut(s)	662, 918
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	529, 811, 863, 1249
BccI	CCATC	4 cut(s)	523, 683, 762, 1212
BciT130I	CCWGG	1 cut(s)	856
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	260, 902
BfmI	CTRYAG	3 cut(s)	543, 849, 933
BisI	GCNGC	5 cut(s)	363, 543, 825, 852, 1263
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	5 cut(s)	364, 544, 826, 853, 1264
Bme1390I	CCNGG	1 cut(s)	856
BmiI	GGNNCC	2 cut(s)	1077, 1233
BmrFI	CCNGG	1 cut(s)	856
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	3 cut(s)	15, 817, 1117
BmuI	ACTGGG	1 cut(s)	870
BpiI	GAAGAC	2 cut(s)	662, 918
BpmI	CTGGAG	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	761, 855
Bsc4I	CCNNNNNNNGG	7 cut(s)	804, 880, 881, 882, 1072, 1154, 1252
Bse1I	ACTGG	5 cut(s)	180, 454, 745, 876, 1017
Bse3DI	GCAATG	2 cut(s)	108, 1101
BseBI	CCWGG	1 cut(s)	856
BseDI	CCNNGG	2 cut(s)	761, 855
BseGI	GGATG	4 cut(s)	109, 418, 808, 1261
BseLI	CCNNNNNNNGG	7 cut(s)	804, 880, 881, 882, 1072, 1154, 1252
BseMI	GCAATG	2 cut(s)	108, 1101
BseMII	CTCAG	2 cut(s)	765, 897
BseNI	ACTGG	5 cut(s)	180, 454, 745, 876, 1017
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	4 cut(s)	529, 811, 863, 1249
BshFI	GGCC	2 cut(s)	406, 1036
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	7 cut(s)	804, 880, 881, 882, 1072, 1154, 1252
BsmAI	GTCTC	2 cut(s)	260, 902
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	2 cut(s)	406, 1036
Bsp1286I	GDGCHC	2 cut(s)	207, 1080
Bsp1407I	TGTACA	2 cut(s)	301, 1046
Bsp143I	GATC	4 cut(s)	246, 556, 592, 1287
Bsp1720I	GCTNAGC	1 cut(s)	774
BspACI	CCGC	2 cut(s)	199, 362
BspANI	GGCC	2 cut(s)	406, 1036
BspCNI	CTCAG	2 cut(s)	766, 898
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	1077, 1233
BspMAI	CTGCAG	2 cut(s)	547, 853
BspPI	GGATC	1 cut(s)	551
BsrDI	GCAATG	2 cut(s)	108, 1101
BsrGI	TGTACA	2 cut(s)	301, 1046
BsrI	ACTGG	5 cut(s)	180, 454, 745, 876, 1017
BssECI	CCNNGG	2 cut(s)	761, 855
BssMI	GATC	4 cut(s)	246, 556, 592, 1287
BssNI	GRCGYC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	761
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	5 cut(s)	100, 474, 725, 924, 1171
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	154
BstAUI	TGTACA	2 cut(s)	301, 1046
BstC8I	GCNNGC	2 cut(s)	510, 622
BstDEI	CTNAG	5 cut(s)	12, 651, 774, 906, 1247
BstF5I	GGATG	4 cut(s)	109, 418, 808, 1261
BstKTI	GATC	4 cut(s)	249, 559, 595, 1290
BstMAI	GTCTC	2 cut(s)	260, 902
BstMBI	GATC	4 cut(s)	246, 556, 592, 1287
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 833
BstNI	CCWGG	1 cut(s)	856
BstNSI	RCATGY	3 cut(s)	59, 194, 591
BstSCI	CCNGG	1 cut(s)	854
BstSFI	CTRYAG	3 cut(s)	543, 849, 933
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	529, 811, 863, 1249
BstV2I	GAAGAC	2 cut(s)	662, 918
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	406, 1036
BtgZI	GCGATG	1 cut(s)	781
BtsCI	GGATG	4 cut(s)	109, 418, 808, 1261
BtsIMutI	CAGTG	3 cut(s)	96, 483, 1035
Cac8I	GCNNGC	2 cut(s)	510, 622
CaiI	CAGNNNCTG	1 cut(s)	791
CciI	TCATGA	1 cut(s)	489
CseI	GACGC	2 cut(s)	143, 1268
Csp6I	GTAC	2 cut(s)	302, 1047
CviAII	CATG	6 cut(s)	56, 191, 490, 588, 821, 1228
CviQI	GTAC	2 cut(s)	302, 1047
DdeI	CTNAG	5 cut(s)	12, 651, 774, 906, 1247
DpnI	GATC	4 cut(s)	248, 558, 594, 1289
DpnII	GATC	4 cut(s)	246, 556, 592, 1287
EaeI	YGGCCR	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	761
Eco147I	AGGCCT	1 cut(s)	1036
Eco24I	GRGCYC	1 cut(s)	1080
Eco57I	CTGAAG	2 cut(s)	546, 1257
EcoRII	CCWGG	1 cut(s)	854
EcoT14I	CCWWGG	1 cut(s)	761
EcoT38I	GRGCYC	1 cut(s)	1080
ErhI	CCWWGG	1 cut(s)	761
FaeI	CATG	6 cut(s)	59, 194, 493, 591, 824, 1231
FalI	AAGNNNNNCTT	2 cut(s)	1230, 1262
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	6 cut(s)	55, 190, 489, 587, 820, 1227
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	5 cut(s)	363, 543, 825, 852, 1263
FokI	GGATG	4 cut(s)	116, 405, 795, 1268
FriOI	GRGCYC	1 cut(s)	1080
Fsp4HI	GCNGC	5 cut(s)	363, 543, 825, 852, 1263
GluI	GCNGC	5 cut(s)	363, 543, 825, 852, 1263
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	406, 1036
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	2 cut(s)	143, 1268
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	6 cut(s)	59, 194, 493, 591, 824, 1231
HindIII	AAGCTT	1 cut(s)	1195
HinfI	GANTC	5 cut(s)	331, 453, 467, 794, 842
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	43, 470
Hpy166II	GTNNAC	4 cut(s)	34, 205, 979, 1174
Hpy188I	TCNGA	3 cut(s)	159, 265, 688
Hpy188III	TCNNGA	6 cut(s)	83, 296, 490, 980, 995, 1235
Hpy8I	GTNNAC	4 cut(s)	34, 205, 979, 1174
HpyAV	CCTTC	1 cut(s)	570
HpyCH4III	ACNGT	5 cut(s)	100, 474, 725, 924, 1171
HpyCH4IV	ACGT	2 cut(s)	817, 1011
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 833
HpyF3I	CTNAG	5 cut(s)	12, 651, 774, 906, 1247
HpySE526I	ACGT	2 cut(s)	817, 1011
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	6 cut(s)	59, 194, 493, 591, 824, 1231
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	246, 556, 592, 1287
LmnI	GCTCC	3 cut(s)	307, 619, 1075
Lsp1109I	GCAGC	4 cut(s)	529, 811, 863, 1249
LweI	GCATC	3 cut(s)	15, 817, 1117
MaeII	ACGT	2 cut(s)	817, 1011
MalI	GATC	4 cut(s)	248, 558, 594, 1289
MboI	GATC	4 cut(s)	246, 556, 592, 1287
MboII	GAAGA	6 cut(s)	389, 667, 837, 918, 921, 1250
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	2 cut(s)	207, 1080
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	5 cut(s)	40, 212, 231, 576, 1116
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	9 cut(s)	218, 303, 379, 454, 457, 676, 955, 979, 1026
Mox20I	TGGCCA	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	2 cut(s)	567, 1199
MslI	CAYNNNNRTG	1 cut(s)	1209
Msp20I	TGGCCA	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	856
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	856
MwoI	GCNNNNNNNGC	2 cut(s)	196, 833
NdeII	GATC	4 cut(s)	246, 556, 592, 1287
NlaIII	CATG	6 cut(s)	59, 194, 493, 591, 824, 1231
NlaIV	GGNNCC	2 cut(s)	1077, 1233
NspI	RCATGY	3 cut(s)	59, 194, 591
PagI	TCATGA	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	1036
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	4 cut(s)	453, 467, 794, 842
PkrI	GCNGC	5 cut(s)	364, 544, 826, 853, 1264
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	854
PspN4I	GGNNCC	2 cut(s)	1077, 1233
PstI	CTGCAG	2 cut(s)	547, 853
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	303, 1048
RsaNI	GTAC	2 cut(s)	302, 1047
RseI	CAYNNNNRTG	1 cut(s)	1209
SaqAI	TTAA	2 cut(s)	567, 1199
SatI	GCNGC	5 cut(s)	363, 543, 825, 852, 1263
Sau3AI	GATC	4 cut(s)	246, 556, 592, 1287
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	856
SduI	GDGCHC	2 cut(s)	207, 1080
SfaNI	GCATC	3 cut(s)	15, 817, 1117
SfcI	CTRYAG	3 cut(s)	543, 849, 933
SmiMI	CAYNNNNRTG	1 cut(s)	1209
Sse9I	AATT	5 cut(s)	40, 212, 231, 576, 1116
SseBI	AGGCCT	1 cut(s)	1036
SsiI	CCGC	2 cut(s)	199, 362
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	1 cut(s)	854
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	5 cut(s)	100, 474, 725, 924, 1171
TaiI	ACGT	2 cut(s)	820, 1014
TaqI	TCGA	1 cut(s)	1290
TasI	AATT	5 cut(s)	40, 212, 231, 576, 1116
TatI	WGTACW	2 cut(s)	301, 1046
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	4 cut(s)	453, 467, 794, 842
Tru1I	TTAA	2 cut(s)	567, 1199
Tru9I	TTAA	2 cut(s)	567, 1199
TscAI	CASTG	3 cut(s)	103, 483, 1035
TseI	GCWGC	4 cut(s)	542, 824, 851, 1262
TspDTI	ATGAA	4 cut(s)	407, 478, 506, 720
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	3 cut(s)	103, 483, 1035
VneI	GTGCAC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	3 cut(s)	59, 194, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.