RLG00000015562
NAC Family

inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006791
Physical Location & Seq
Reverse (-)
67855908 .. 67862257
6350 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015562

Sequence Viewer

Length: 1713 bp
ATGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCGGCAGGTGTCGACAGGTCTCGGCAGGTGCTCGGCAGGTCTCGGCAAATGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGAAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGATGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGATGCTCGGCAGGTGTCGGCAGCTGCTCGGCAGGGGCTCGGCAGGTGTCGGCAGGTCTCGGCAGATGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGATGCTCGGCAGGTCTCGGCAGCTGCTCGGCAGCTCTCGGCAGGAATAGGGAATATGGAGAATTGGGAGATCGTGCACGTGCCAGACAATCCCCCAATCCCTCCTGACCAACAGCCCACAGTGGATGTGATTGCTTCAGTTATAGACCCAAAAGTTGCCAACACTCTTGTAAGGCGTCTAAACCAAATAGCACAACTGGAAAATCTAAGGCACGTGAAGCGGGTCAAGAAGAAATTTGTTGAAGGAGGAAGGACTCAGTTATCCGTGATCTTATGTTTAGCTTCTGAAATTGGTAATCCGTTGGAGAGCATACCCCACGATGTACAGGAGCTTATGAATTCCTACCAGTTGAGTCCTTTTATCACAAAAGTCTGCAATTATGCAGCATTATCAAAAGAAGAGTGGGAGGAACAATGCAAGCTATGGCCAACATCTTATCATCCACCAACCTATAATATCGATGGCATTACTGGATTCAGTGAAGAGGACTCACAGTCAGTGTTTGGCTTTATGAAATATGCTATTCAGCTGGCGAAGTCTGGTGATAAAATGGTAGTCAATGCTGGAGTTATAGTAGATCCTTCAGTTAAACAGATAATTACTACTGCATGTGATCAAACTTGCTCTTGGTATACTCCTGCGAACAACACCACCCTTGAAACATACTGCTTTGAAAAGACAGAAGCTTCTGTTACCCAGAGCCAATCAGATGGAGTATTCAGCTATGAAACTCTGCATTCAAACAGTTTGCCACATTTTCCAAAACAATTAAATACTGGTGTTTGTTGTTTATATCCATGGGGATGGGCTGAGCAACAATCAGACACTAATTCCTGCTCTTGGCACCCTTTACGTCATGCTGCTATTGTTGCTATTGAATCTTCTGCTGCCAGGGACATACATCTTTTCCCCAGTTTGGGGAAAATCCAAGATAAGTATGCTGAAACGGAGCACATACACTCTTCTTCTGCAGGCTCTCCAGCCAAAAGACAAAAGACCCATACTACAAAAGTTAATGATGAGGCTCATCTGGACAGTAATGATGAAGGTTCCAGTTCTTTATCAGTGAGACCTTATCTATGTACAGGTTTTGACATTTACCTTGCTTGGGAGCCCTGCATAATGTGTGCAATGGCACTTGTGCATCAAAGAATTAGGCGTATATTCTTTGCTTTTCCGAACCCAAATGCAGGGGCATTGGGCACTGTTCACAGACTACAAGGGGAAAGAAGCTTAAACCATCACTATGCTGTATTTAGGGTCTTGGTTCCTGAAGAAGTCCTTAGTAGGGATGAAACTGCGGCTGCTGAGTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dCMP_cyt_deam_1

Protein Analysis

571

Amino Acids

62.81

Weight (kDa)

8.91

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1236
AccI GTMKAC 2 cut(s) 88, 1025
AciI CCGC 2 cut(s) 613, 1694
AclWI GGATC 1 cut(s) 965
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 2 cut(s) 626, 730
AcuI CTGAAG 3 cut(s) 513, 960, 1686
AcvI CACGTG 2 cut(s) 472, 607
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 3 cut(s) 717, 1477, 1706
AfiI CCNNNNNNNGG 7 cut(s) 1233, 1309, 1310, 1311, 1501, 1583, 1681
AgsI TTSAA 5 cut(s) 635, 1052, 1067, 1134, 1271
AhdI GACNNNNNGTC 1 cut(s) 886
AjnI CCWGG 1 cut(s) 1283
Alw21I GWGCWC 7 cut(s) 78, 109, 151, 183, 265, 471, 1347
Alw26I GTCTC 5 cut(s) 100, 121, 340, 412, 1456
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 1 cut(s) 965
AoxI GGCC 2 cut(s) 31, 818
ApaLI GTGCAC 1 cut(s) 467
ApoI RAATTY 2 cut(s) 626, 730
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 947
BaeGI GKGCMC 2 cut(s) 471, 1598
BalI TGGCCA 1 cut(s) 820
BanI GGYRCC 1 cut(s) 1236
BanII GRGCYC 2 cut(s) 318, 1509
BbrPI CACGTG 2 cut(s) 472, 607
Bbv12I GWGCWC 7 cut(s) 78, 109, 151, 183, 265, 471, 1347
BccI CCATC 4 cut(s) 848, 1097, 1191, 1641
BcgI CGANNNNNNTGC 3 cut(s) 16, 27, 50
BciT130I CCWGG 1 cut(s) 1285
BclI TGATCA 1 cut(s) 1006
BcoDI GTCTC 5 cut(s) 100, 121, 340, 412, 1456
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 1362
BlpI GCTNAGC 1 cut(s) 1203
Bme1390I CCNGG 1 cut(s) 1285
BmeRI GACNNNNNGTC 1 cut(s) 886
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 5 cut(s) 32, 1238, 1444, 1506, 1662
BmrFI CCNGG 1 cut(s) 1285
BmrI ACTGGG 1 cut(s) 1299
BmsI GCATC 5 cut(s) 219, 271, 334, 385, 1546
BmuI ACTGGG 1 cut(s) 1299
BpmI CTGGAG 2 cut(s) 978, 1356
Bpu1102I GCTNAGC 1 cut(s) 1203
Bsa29I ATCGAT 1 cut(s) 852
BsaAI YACGTR 2 cut(s) 472, 607
BsaHI GRCGYC 1 cut(s) 568
BsaI GGTCTC 5 cut(s) 100, 121, 340, 412, 1456
BsaJI CCNNGG 3 cut(s) 34, 1190, 1284
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 7 cut(s) 1233, 1309, 1310, 1311, 1501, 1583, 1681
Bse1I ACTGG 6 cut(s) 594, 739, 868, 1174, 1305, 1446
Bse3DI GCAATG 1 cut(s) 1530
BseBI CCWGG 1 cut(s) 1285
BseCI ATCGAT 1 cut(s) 852
BseDI CCNNGG 3 cut(s) 34, 1190, 1284
BseGI GGATG 4 cut(s) 523, 832, 1202, 1690
BseLI CCNNNNNNNGG 7 cut(s) 1233, 1309, 1310, 1311, 1501, 1583, 1681
BseMI GCAATG 1 cut(s) 1530
BseMII CTCAG 3 cut(s) 662, 1194, 1692
BseNI ACTGG 6 cut(s) 594, 739, 868, 1174, 1305, 1446
BseSI GKGCMC 2 cut(s) 471, 1598
BshFI GGCC 2 cut(s) 33, 820
BshNI GGYRCC 1 cut(s) 1236
BshVI ATCGAT 1 cut(s) 852
BsiHKAI GWGCWC 7 cut(s) 78, 109, 151, 183, 265, 471, 1347
BslFI GGGAC 1 cut(s) 1301
BslI CCNNNNNNNGG 7 cut(s) 1233, 1309, 1310, 1311, 1501, 1583, 1681
BsmAI GTCTC 5 cut(s) 100, 121, 340, 412, 1456
BsmFI GGGAC 1 cut(s) 1301
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 2 cut(s) 33, 820
Bso31I GGTCTC 5 cut(s) 100, 121, 340, 412, 1456
Bsp1407I TGTACA 2 cut(s) 715, 1475
Bsp143I GATC 4 cut(s) 462, 660, 970, 1006
Bsp1720I GCTNAGC 1 cut(s) 1203
Bsp19I CCATGG 1 cut(s) 1190
BspACI CCGC 2 cut(s) 613, 1694
BspANI GGCC 2 cut(s) 33, 820
BspCNI CTCAG 3 cut(s) 661, 1195, 1693
BspDI ATCGAT 1 cut(s) 852
BspLI GGNNCC 5 cut(s) 32, 1238, 1444, 1506, 1662
BspMAI CTGCAG 1 cut(s) 1366
BspPI GGATC 1 cut(s) 965
BspT107I GGYRCC 1 cut(s) 1236
BspTNI GGTCTC 5 cut(s) 100, 121, 340, 412, 1456
BsrDI GCAATG 1 cut(s) 1530
BsrGI TGTACA 2 cut(s) 715, 1475
BsrI ACTGG 6 cut(s) 594, 739, 868, 1174, 1305, 1446
BssECI CCNNGG 3 cut(s) 34, 1190, 1284
BssMI GATC 4 cut(s) 462, 660, 970, 1006
BssNAI GTATAC 1 cut(s) 1026
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 1190
Bst1107I GTATAC 1 cut(s) 1026
Bst2UI CCWGG 1 cut(s) 1285
Bst4CI ACNGT 5 cut(s) 514, 888, 1139, 1430, 1600
Bst6I CTCTTC 3 cut(s) 786, 870, 1360
BstACI GRCGYC 1 cut(s) 568
BstAUI TGTACA 2 cut(s) 715, 1475
BstBAI YACGTR 2 cut(s) 472, 607
BstC8I GCNNGC 3 cut(s) 812, 924, 1366
BstDEI CTNAG 5 cut(s) 599, 648, 1203, 1676, 1701
BstDSI CCRYGG 1 cut(s) 1190
BstF5I GGATG 4 cut(s) 523, 832, 1202, 1690
BstKTI GATC 4 cut(s) 465, 663, 973, 1009
BstMAI GTCTC 5 cut(s) 100, 121, 340, 412, 1456
BstMBI GATC 4 cut(s) 462, 660, 970, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 610, 1262
BstNI CCWGG 1 cut(s) 1285
BstNSI RCATGY 1 cut(s) 1005
BstSCI CCNGG 1 cut(s) 1283
BstSFI CTRYAG 1 cut(s) 1362
BstSLI GKGCMC 2 cut(s) 471, 1598
BstX2I RGATCY 1 cut(s) 970
BstXI CCANNNNNNTGG 2 cut(s) 1103, 1197
BstYI RGATCY 1 cut(s) 970
BstZ17I GTATAC 1 cut(s) 1026
Bsu15I ATCGAT 1 cut(s) 852
BsuRI GGCC 2 cut(s) 33, 820
BsuTUI ATCGAT 1 cut(s) 852
BtgI CCRYGG 1 cut(s) 1190
BtsCI GGATG 4 cut(s) 523, 832, 1202, 1690
BtsIMutI CAGTG 5 cut(s) 519, 877, 897, 1464, 1596
Cac8I GCNNGC 3 cut(s) 812, 924, 1366
Cfr13I GGNCC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 852
CseI GACGC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 716, 1476, 1705
CviAII CATG 3 cut(s) 1002, 1191, 1250
CviQI GTAC 3 cut(s) 716, 1476, 1705
DdeI CTNAG 5 cut(s) 599, 648, 1203, 1676, 1701
DpnI GATC 4 cut(s) 464, 662, 972, 1008
DpnII GATC 4 cut(s) 462, 660, 970, 1006
DriI GACNNNNNGTC 1 cut(s) 886
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 3 cut(s) 786, 870, 1360
Eam1105I GACNNNNNGTC 1 cut(s) 886
EarI CTCTTC 3 cut(s) 786, 870, 1360
Eco130I CCWWGG 1 cut(s) 1190
Eco24I GRGCYC 2 cut(s) 318, 1509
Eco31I GGTCTC 5 cut(s) 100, 121, 340, 412, 1456
Eco57I CTGAAG 3 cut(s) 513, 960, 1686
Eco72I CACGTG 2 cut(s) 472, 607
EcoO109I RGGNCCY 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 1283
EcoT14I CCWWGG 1 cut(s) 1190
EcoT38I GRGCYC 2 cut(s) 318, 1509
ErhI CCWWGG 1 cut(s) 1190
FaeI CATG 3 cut(s) 1005, 1194, 1253
FalI AAGNNNNNCTT 2 cut(s) 1659, 1691
FaqI GGGAC 1 cut(s) 1301
FatI CATG 3 cut(s) 1001, 1190, 1249
FauI CCCGC 1 cut(s) 606
FbaI TGATCA 1 cut(s) 1006
FblI GTMKAC 2 cut(s) 88, 1025
FokI GGATG 4 cut(s) 530, 819, 1209, 1697
FriOI GRGCYC 2 cut(s) 318, 1509
FspBI CTAG 1 cut(s) 56
GsuI CTGGAG 2 cut(s) 978, 1356
HaeIII GGCC 2 cut(s) 33, 820
HgaI GACGC 1 cut(s) 557
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 3 cut(s) 1005, 1194, 1253
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HindIII AAGCTT 2 cut(s) 1077, 1624
HinfI GANTC 5 cut(s) 646, 745, 867, 881, 1271
HphI GGTGA 1 cut(s) 947
Hpy166II GTNNAC 4 cut(s) 89, 469, 1026, 1603
Hpy188I TCNGA 5 cut(s) 195, 679, 1102, 1216, 1572
Hpy188III TCNNGA 4 cut(s) 497, 619, 1424, 1664
Hpy8I GTNNAC 4 cut(s) 89, 469, 1026, 1603
HpyAV CCTTC 5 cut(s) 190, 629, 636, 984, 1433
HpyCH4III ACNGT 5 cut(s) 514, 888, 1139, 1430, 1600
HpyCH4IV ACGT 3 cut(s) 471, 606, 1246
HpyF10VI GCNNNNNNNGC 2 cut(s) 610, 1262
HpyF3I CTNAG 5 cut(s) 599, 648, 1203, 1676, 1701
HpySE526I ACGT 3 cut(s) 471, 606, 1246
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 3 cut(s) 1005, 1194, 1253
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 4 cut(s) 462, 660, 970, 1006
LmnI GCTCC 3 cut(s) 721, 1342, 1504
LweI GCATC 5 cut(s) 219, 271, 334, 385, 1546
MaeI CTAG 1 cut(s) 56
MaeII ACGT 3 cut(s) 471, 606, 1246
MaeIII GTNAC 1 cut(s) 1084
MalI GATC 4 cut(s) 464, 662, 972, 1008
MboI GATC 4 cut(s) 462, 660, 970, 1006
MboII GAAGA 7 cut(s) 634, 803, 887, 1266, 1347, 1350, 1679
MflI RGATCY 1 cut(s) 970
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 9 cut(s) 454, 626, 681, 730, 769, 990, 1160, 1222, 1545
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 3 cut(s) 640, 754, 875
MmeI TCCRAC 2 cut(s) 173, 675
MnlI CCTC 6 cut(s) 44, 504, 632, 793, 871, 1408
Mox20I TGGCCA 1 cut(s) 820
MscI TGGCCA 1 cut(s) 820
MseI TTAA 4 cut(s) 981, 1163, 1407, 1628
MslI CAYNNNNRTG 2 cut(s) 1195, 1638
Msp20I TGGCCA 1 cut(s) 820
MspA1I CMGCKG 3 cut(s) 302, 416, 922
MspR9I CCNGG 1 cut(s) 1285
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 1 cut(s) 1285
MwoI GCNNNNNNNGC 2 cut(s) 610, 1262
NcoI CCATGG 1 cut(s) 1190
NdeII GATC 4 cut(s) 462, 660, 970, 1006
NlaIII CATG 3 cut(s) 1005, 1194, 1253
NlaIV GGNNCC 5 cut(s) 32, 1238, 1444, 1506, 1662
NspI RCATGY 1 cut(s) 1005
PctI GAATGC 1 cut(s) 1129
PfeI GAWTC 2 cut(s) 867, 1271
PleI GAGTC 3 cut(s) 640, 753, 875
PmaCI CACGTG 2 cut(s) 472, 607
PmlI CACGTG 2 cut(s) 472, 607
PpsI GAGTC 3 cut(s) 640, 753, 875
Ppu21I YACGTR 2 cut(s) 472, 607
Psp6I CCWGG 1 cut(s) 1283
PspCI CACGTG 2 cut(s) 472, 607
PspGI CCWGG 1 cut(s) 1283
PspN4I GGNNCC 5 cut(s) 32, 1238, 1444, 1506, 1662
PspPI GGNCC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 1366
PsuI RGATCY 1 cut(s) 970
PvuII CAGCTG 3 cut(s) 302, 416, 922
RsaI GTAC 3 cut(s) 717, 1477, 1706
RsaNI GTAC 3 cut(s) 716, 1476, 1705
RseI CAYNNNNRTG 2 cut(s) 1195, 1638
SalI GTCGAC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 981, 1163, 1407, 1628
Sau3AI GATC 4 cut(s) 462, 660, 970, 1006
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 3 cut(s) 640, 754, 875
ScrFI CCNGG 1 cut(s) 1285
SfaNI GCATC 5 cut(s) 219, 271, 334, 385, 1546
SfcI CTRYAG 1 cut(s) 1362
SmiMI CAYNNNNRTG 2 cut(s) 1195, 1638
Sse9I AATT 9 cut(s) 454, 626, 681, 730, 769, 990, 1160, 1222, 1545
SsiI CCGC 2 cut(s) 613, 1694
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 1283
StyI CCWWGG 1 cut(s) 1190
TaaI ACNGT 5 cut(s) 514, 888, 1139, 1430, 1600
TaiI ACGT 3 cut(s) 474, 609, 1249
TaqI TCGA 2 cut(s) 88, 852
TasI AATT 9 cut(s) 454, 626, 681, 730, 769, 990, 1160, 1222, 1545
TatI WGTACW 3 cut(s) 715, 1475, 1704
TauI GCSGC 1 cut(s) 1697
TfiI GAWTC 2 cut(s) 867, 1271
Tru1I TTAA 4 cut(s) 981, 1163, 1407, 1628
Tru9I TTAA 4 cut(s) 981, 1163, 1407, 1628
TscAI CASTG 5 cut(s) 519, 877, 897, 1464, 1603
TspDTI ATGAA 5 cut(s) 743, 920, 1134, 1452, 1701
TspGWI ACGGA 3 cut(s) 646, 681, 1355
TspRI CASTG 5 cut(s) 519, 877, 897, 1464, 1603
VneI GTGCAC 1 cut(s) 467
XapI RAATTY 2 cut(s) 626, 730
XceI RCATGY 1 cut(s) 1005
XmiI GTMKAC 2 cut(s) 88, 1025
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.