Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Forward (+)

454066 .. 459130

Gene Structure 5065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGAATTGGGAGATCGTGCACGTGCCAGACAATCCCCCAATCCCTCCTGACCAACAGCCCACAGTGGATGTGATTGCTTCAGTTATAGACCCAAAAGTTGCCAACACTCTTGTAAGGCGTCTAAACCAAATAGCACAACTGGAAAATCTAAGGCACGTGAAGCGGGTCAAGAAGAAATTTGTTGAAGGAGGAAGGACTCAGTTATCCGTGATCTTATGTTTAGCTTCTGAAATTGGTAATCCGTTGGAGAGCATACCCCACGATGTACAGGAGCTTATGAATTCCTACCAGTTGAGTCCTTTTATCACAAAAGTCTGCAACTATGCAGCATTATCAAAAGAAGAGTGGGAGGAACAATGCAAGCTATGGCCAACATCTTATCATCCCCCAACCTATAATATCGATGGCATTACTGGATTCAGTGAAGAGGACTCACAGTCAGTGTTTGGCTTTATGAAATATGCTATTCAGTTGGCGAAGTCTGGTGATAAAATGGTAGTCAATGCTGCAGTTATAGTAGATCCTTCAGTTAAACAGGTAATTACTACTGCATGTGATCAAACTTGCTCTTGGTATACTCCTGCGAACAACACCACCCTTGAAACATACTGCTTTGAAAAGACAGAAGCTTCTGTTTCCCAGAGCCAATCAGATGGAGTATTCAGCTATGAAACTCTGCATTCAAACAGTTTGCCACATTTTCCAAAACAATTAAATACTGGTGTTTGTTGTTTATATCCATGGGGATGGGCTGAGCAACAATCAGACACTAATTCCTGCTCTTGGCACCCTTTACGTCATGCTGCTATTGTTGCTATTGAATCTTCTGCTGCCAGGGACATACATCTTTTCCCCAGTTTGGGGAAAATCCAAGATAAGTATGCTGAAACGGAGCACATACACTCTTCTTCTGCAGGCTCTCCAGCCAAAAGACAAAAGACCCATTCTACAAAAGTTAATGATGAGGCTCATCTGGACAGTAATGATGAAGGTTCCAGTTCTTTATCAGTGAGACCTTATCTATGTACAGGTTTTGACATTTACCTTGCTTGGGAGCCCTGCATAATGTGTGCAATGGCACTTGTGCATCAAAGAATTAGGCGTATATTCTTTGCTTTTCCGAACCCAAATGCAGGGGCATTGGGCACTGTTCACAGACTACAAGGGGAAAGAAGCTTAAACCATCACTATGCTGTATTTAGGGTCTTGGTTCCTGAAGAAGTCCTTAGTAGGGATGAAACTGCGGCTGCTGAGTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

421

Amino Acids

47.11

Weight (kDa)

5.7

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	578
AciI	CCGC	2 cut(s)	166, 1247
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	179, 283
AcuI	CTGAAG	3 cut(s)	66, 513, 1239
AcvI	CACGTG	2 cut(s)	25, 160
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	3 cut(s)	270, 1030, 1259
AfiI	CCNNNNNNNGG	7 cut(s)	786, 862, 863, 864, 1054, 1136, 1234
AgsI	TTSAA	5 cut(s)	188, 605, 620, 687, 824
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	836
AluBI	AGCT	6 cut(s)	227, 277, 367, 632, 669, 1179
AluI	AGCT	6 cut(s)	227, 277, 367, 632, 669, 1179
Alw21I	GWGCWC	2 cut(s)	24, 900
Alw26I	GTCTC	1 cut(s)	1009
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	5 cut(s)	329, 509, 806, 833, 1250
ApoI	RAATTY	2 cut(s)	179, 283
AsuHPI	GGTGA	1 cut(s)	500
BaeGI	GKGCMC	2 cut(s)	24, 1151
BalI	TGGCCA	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	1062
BbrPI	CACGTG	2 cut(s)	25, 160
Bbv12I	GWGCWC	2 cut(s)	24, 900
BbvI	GCAGC	5 cut(s)	341, 496, 793, 820, 1237
BccI	CCATC	4 cut(s)	401, 650, 744, 1194
BciT130I	CCWGG	1 cut(s)	838
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	1009
BfmI	CTRYAG	2 cut(s)	510, 915
BisI	GCNGC	6 cut(s)	330, 510, 807, 834, 1248, 1251
BlpI	GCTNAGC	1 cut(s)	756
BlsI	GCNGC	6 cut(s)	331, 511, 808, 835, 1249, 1252
Bme1390I	CCNGG	1 cut(s)	838
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmiI	GGNNCC	4 cut(s)	791, 997, 1059, 1215
BmrFI	CCNGG	1 cut(s)	838
BmrI	ACTGGG	1 cut(s)	852
BmsI	GCATC	1 cut(s)	1099
BmuI	ACTGGG	1 cut(s)	852
BpmI	CTGGAG	1 cut(s)	909
Bpu1102I	GCTNAGC	1 cut(s)	756
Bsa29I	ATCGAT	1 cut(s)	405
BsaAI	YACGTR	2 cut(s)	25, 160
BsaHI	GRCGYC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	1009
BsaJI	CCNNGG	2 cut(s)	743, 837
Bsc4I	CCNNNNNNNGG	7 cut(s)	786, 862, 863, 864, 1054, 1136, 1234
Bse1I	ACTGG	6 cut(s)	147, 292, 421, 727, 858, 999
Bse3DI	GCAATG	1 cut(s)	1083
BseBI	CCWGG	1 cut(s)	838
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	743, 837
BseGI	GGATG	4 cut(s)	76, 385, 755, 1243
BseLI	CCNNNNNNNGG	7 cut(s)	786, 862, 863, 864, 1054, 1136, 1234
BseMI	GCAATG	1 cut(s)	1083
BseMII	CTCAG	3 cut(s)	215, 747, 1245
BseNI	ACTGG	6 cut(s)	147, 292, 421, 727, 858, 999
BseSI	GKGCMC	2 cut(s)	24, 1151
BseXI	GCAGC	5 cut(s)	341, 496, 793, 820, 1237
BshFI	GGCC	1 cut(s)	373
BshNI	GGYRCC	1 cut(s)	789
BshVI	ATCGAT	1 cut(s)	405
BsiHKAI	GWGCWC	2 cut(s)	24, 900
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	7 cut(s)	786, 862, 863, 864, 1054, 1136, 1234
BsmAI	GTCTC	1 cut(s)	1009
BsmFI	GGGAC	1 cut(s)	854
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	373
Bso31I	GGTCTC	1 cut(s)	1009
Bsp1286I	GDGCHC	4 cut(s)	24, 900, 1062, 1151
Bsp1407I	TGTACA	2 cut(s)	268, 1028
Bsp143I	GATC	4 cut(s)	15, 213, 523, 559
Bsp1720I	GCTNAGC	1 cut(s)	756
Bsp19I	CCATGG	1 cut(s)	743
BspACI	CCGC	2 cut(s)	166, 1247
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	3 cut(s)	214, 748, 1246
BspDI	ATCGAT	1 cut(s)	405
BspLI	GGNNCC	4 cut(s)	791, 997, 1059, 1215
BspMAI	CTGCAG	2 cut(s)	514, 919
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	789
BspTNI	GGTCTC	1 cut(s)	1009
BsrDI	GCAATG	1 cut(s)	1083
BsrGI	TGTACA	2 cut(s)	268, 1028
BsrI	ACTGG	6 cut(s)	147, 292, 421, 727, 858, 999
BssECI	CCNNGG	2 cut(s)	743, 837
BssMI	GATC	4 cut(s)	15, 213, 523, 559
BssNAI	GTATAC	1 cut(s)	579
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	743
Bst1107I	GTATAC	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	5 cut(s)	67, 441, 692, 983, 1153
Bst6I	CTCTTC	3 cut(s)	339, 423, 913
BstACI	GRCGYC	1 cut(s)	121
BstAUI	TGTACA	2 cut(s)	268, 1028
BstBAI	YACGTR	2 cut(s)	25, 160
BstC8I	GCNNGC	2 cut(s)	365, 919
BstDEI	CTNAG	5 cut(s)	152, 201, 756, 1229, 1254
BstDSI	CCRYGG	1 cut(s)	743
BstF5I	GGATG	4 cut(s)	76, 385, 755, 1243
BstKTI	GATC	4 cut(s)	18, 216, 526, 562
BstMAI	GTCTC	1 cut(s)	1009
BstMBI	GATC	4 cut(s)	15, 213, 523, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 815
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	2 cut(s)	510, 915
BstSLI	GKGCMC	2 cut(s)	24, 1151
BstV1I	GCAGC	5 cut(s)	341, 496, 793, 820, 1237
BstX2I	RGATCY	1 cut(s)	523
BstXI	CCANNNNNNTGG	2 cut(s)	656, 750
BstYI	RGATCY	1 cut(s)	523
BstZ17I	GTATAC	1 cut(s)	579
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	373
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	743
BtsCI	GGATG	4 cut(s)	76, 385, 755, 1243
BtsIMutI	CAGTG	5 cut(s)	72, 430, 450, 1017, 1149
Cac8I	GCNNGC	2 cut(s)	365, 919
ClaI	ATCGAT	1 cut(s)	405
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	269, 1029, 1258
CviAII	CATG	3 cut(s)	555, 744, 803
CviQI	GTAC	3 cut(s)	269, 1029, 1258
DdeI	CTNAG	5 cut(s)	152, 201, 756, 1229, 1254
DpnI	GATC	4 cut(s)	17, 215, 525, 561
DpnII	GATC	4 cut(s)	15, 213, 523, 559
DriI	GACNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	371
Eam1104I	CTCTTC	3 cut(s)	339, 423, 913
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	3 cut(s)	339, 423, 913
Eco130I	CCWWGG	1 cut(s)	743
Eco24I	GRGCYC	1 cut(s)	1062
Eco31I	GGTCTC	1 cut(s)	1009
Eco57I	CTGAAG	3 cut(s)	66, 513, 1239
Eco72I	CACGTG	2 cut(s)	25, 160
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	836
EcoT14I	CCWWGG	1 cut(s)	743
EcoT38I	GRGCYC	1 cut(s)	1062
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	3 cut(s)	558, 747, 806
FalI	AAGNNNNNCTT	2 cut(s)	1212, 1244
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	3 cut(s)	554, 743, 802
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	6 cut(s)	330, 510, 807, 834, 1248, 1251
FokI	GGATG	4 cut(s)	83, 372, 762, 1250
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	6 cut(s)	330, 510, 807, 834, 1248, 1251
GluI	GCNGC	6 cut(s)	330, 510, 807, 834, 1248, 1251
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	373
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	558, 747, 806
HindIII	AAGCTT	2 cut(s)	630, 1177
HinfI	GANTC	5 cut(s)	199, 298, 420, 434, 824
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	22, 579, 1156
Hpy188I	TCNGA	4 cut(s)	232, 655, 769, 1125
Hpy188III	TCNNGA	4 cut(s)	50, 172, 977, 1217
Hpy8I	GTNNAC	3 cut(s)	22, 579, 1156
HpyAV	CCTTC	4 cut(s)	182, 189, 537, 986
HpyCH4III	ACNGT	5 cut(s)	67, 441, 692, 983, 1153
HpyCH4IV	ACGT	3 cut(s)	24, 159, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 815
HpyF3I	CTNAG	5 cut(s)	152, 201, 756, 1229, 1254
HpySE526I	ACGT	3 cut(s)	24, 159, 799
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	558, 747, 806
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	15, 213, 523, 559
LmnI	GCTCC	3 cut(s)	274, 895, 1057
Lsp1109I	GCAGC	5 cut(s)	341, 496, 793, 820, 1237
LweI	GCATC	1 cut(s)	1099
MaeII	ACGT	3 cut(s)	24, 159, 799
MalI	GATC	4 cut(s)	17, 215, 525, 561
MboI	GATC	4 cut(s)	15, 213, 523, 559
MboII	GAAGA	7 cut(s)	187, 356, 440, 819, 900, 903, 1232
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	4 cut(s)	24, 900, 1062, 1151
MlsI	TGGCCA	1 cut(s)	373
MluCI	AATT	8 cut(s)	7, 179, 234, 283, 543, 713, 775, 1098
MluNI	TGGCCA	1 cut(s)	373
MlyI	GAGTC	3 cut(s)	193, 307, 428
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	57, 185, 346, 424, 961
Mox20I	TGGCCA	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	373
MseI	TTAA	4 cut(s)	534, 716, 960, 1181
MslI	CAYNNNNRTG	2 cut(s)	748, 1191
Msp20I	TGGCCA	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	838
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	838
MwoI	GCNNNNNNNGC	2 cut(s)	163, 815
NcoI	CCATGG	1 cut(s)	743
NdeII	GATC	4 cut(s)	15, 213, 523, 559
NlaIII	CATG	3 cut(s)	558, 747, 806
NlaIV	GGNNCC	4 cut(s)	791, 997, 1059, 1215
NspI	RCATGY	1 cut(s)	558
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	420, 824
PkrI	GCNGC	6 cut(s)	331, 511, 808, 835, 1249, 1252
PleI	GAGTC	3 cut(s)	193, 306, 428
PmaCI	CACGTG	2 cut(s)	25, 160
PmlI	CACGTG	2 cut(s)	25, 160
PpsI	GAGTC	3 cut(s)	193, 306, 428
Ppu21I	YACGTR	2 cut(s)	25, 160
Psp6I	CCWGG	1 cut(s)	836
PspCI	CACGTG	2 cut(s)	25, 160
PspGI	CCWGG	1 cut(s)	836
PspN4I	GGNNCC	4 cut(s)	791, 997, 1059, 1215
PstI	CTGCAG	2 cut(s)	514, 919
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	3 cut(s)	270, 1030, 1259
RsaNI	GTAC	3 cut(s)	269, 1029, 1258
RseI	CAYNNNNRTG	2 cut(s)	748, 1191
SaqAI	TTAA	4 cut(s)	534, 716, 960, 1181
SatI	GCNGC	6 cut(s)	330, 510, 807, 834, 1248, 1251
Sau3AI	GATC	4 cut(s)	15, 213, 523, 559
SchI	GAGTC	3 cut(s)	193, 307, 428
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	4 cut(s)	24, 900, 1062, 1151
SfaNI	GCATC	1 cut(s)	1099
SfcI	CTRYAG	2 cut(s)	510, 915
SmiMI	CAYNNNNRTG	2 cut(s)	748, 1191
Sse9I	AATT	8 cut(s)	7, 179, 234, 283, 543, 713, 775, 1098
SsiI	CCGC	2 cut(s)	166, 1247
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	5 cut(s)	67, 441, 692, 983, 1153
TaiI	ACGT	3 cut(s)	27, 162, 802
TaqI	TCGA	1 cut(s)	405
TasI	AATT	8 cut(s)	7, 179, 234, 283, 543, 713, 775, 1098
TatI	WGTACW	3 cut(s)	268, 1028, 1257
TauI	GCSGC	1 cut(s)	1250
TfiI	GAWTC	2 cut(s)	420, 824
Tru1I	TTAA	4 cut(s)	534, 716, 960, 1181
Tru9I	TTAA	4 cut(s)	534, 716, 960, 1181
TscAI	CASTG	5 cut(s)	72, 430, 450, 1017, 1156
TseI	GCWGC	5 cut(s)	329, 509, 806, 833, 1250
TspDTI	ATGAA	5 cut(s)	296, 473, 687, 1005, 1254
TspGWI	ACGGA	3 cut(s)	199, 234, 908
TspRI	CASTG	5 cut(s)	72, 430, 450, 1017, 1156
VneI	GTGCAC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	179, 283
XceI	RCATGY	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.