Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006791

Physical Location & Seq

Genomic Coordinates Reverse (-)

67614198 .. 67614825

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0493500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGATACCGTGATGGTGTTATAGCCGGAAAGGAAGCTTCTTCTCAGGAGGGATTCAATATTGACTTTAAGCAATCACTCCTTGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGTACATTGGCTTCCCTTCCAGATGGTAAAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGAATTAGAACAAGTTGAAGGTTCAGAGGCTAGTTCTTTTGAAGTTGAAACTGGTCTGGAAGAGCAAAGATTAGACCACAGTGGTCTAGGAAATTACTATGCAAAGCTCCGTTCACTTCTTTTGGAGTCGCCTGGAATCAAAGTCAAGTTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

116

Amino Acids

12.94

Weight (kDa)

4.95

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yae1_N	PF09811	2 - 39	1.3e-06	Essential protein Yae1, N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24670 AT5G24670 AT5G24670 AT5G24670 AT5G24670
fragaria_vesca	FvH4_2g00270 FvH4_2g00270
malus_domestica	MD10G1001500.v1.1
prunus_persica	Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1 Prupe.8G002700_v2.0.a1
pyrus_communis	pycom10g00160
rosa_chinensis	RchiOBHm_Chr6g0249561
rosa_laevigata	RLG00000015562
rosa_multiflora	Rmu_sc0013555.1_g000007 Rmu_sc0022692.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217550
rosa_rugosa	Rorug05G0493400 Rorug05G0493500
rosa_samantha	Rh6AG003300 Rh6BG006800 Rh6CG002500 Rh6DG002300
rosa_wichuraiana	Rw6G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	58, 167, 212, 236, 242
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	38, 301
AluI	AGCT	2 cut(s)	38, 301
BarI	GAAGNNNNNNTAC	2 cut(s)	115, 147
BccI	CCATC	2 cut(s)	8, 137
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	3 cut(s)	225, 281, 349
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	101, 250
BseBI	CCWGG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	101, 250
BsiSI	CCGG	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	58
BspQI	GCTCTTC	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	101, 250
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	11, 275
Bst6I	CTCTTC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	123
CviJI	RGCY	5 cut(s)	26, 38, 131, 224, 301
CviKI_1	RGCY	5 cut(s)	26, 38, 131, 224, 301
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	325
FaiI	YATR	2 cut(s)	23, 294
FspBI	CTAG	3 cut(s)	225, 281, 349
HapII	CCGG	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	3 cut(s)	54, 320, 330
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	4 cut(s)	47, 140, 194, 251
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	146, 206
HpyCH4III	ACNGT	2 cut(s)	11, 275
HpyCH4V	TGCA	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	45
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	9 cut(s)	32, 40, 82, 153, 179, 231, 236, 312, 339
MaeI	CTAG	3 cut(s)	225, 281, 349
MaeIII	GTNAC	2 cut(s)	89, 115
MboII	GAAGA	3 cut(s)	33, 185, 266
MluCI	AATT	2 cut(s)	197, 286
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	3 cut(s)	43, 104, 214
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	54, 330
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	69
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	4 cut(s)	40, 115, 217, 303
Sse9I	AATT	2 cut(s)	197, 286
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	3 cut(s)	225, 281, 349
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	11, 275
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	197, 286
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	54, 330
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	280
XspI	CTAG	3 cut(s)	225, 281, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.