Rmu_sc0007784.1_g000013

negative regulation of oxidative stress-induced neuron death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007784.1
OG0020063
Physical Location & Seq
Forward (+)
47836 .. 49274
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007784.1_g000013.1.cds

Sequence Viewer

Length: 477 bp
atggcttccattgatgctgtcacagcaagcttcgctacttcccttgcccttgctgaaggaggtagcgctcctgacctaggaaagattggtggtggcctcgttcgcaggtcctcccaaccttttctgattggaaaacttctgactcgcaagctggttgatcctaagacagaatttagggttcaggaatggactggagatttattcttgttctcctttgaatttgtgcgcgatcgcaacaaggtacttcgaggtgggggttggtgttttgatcaagccctagtttgctttgaagagtatgacgatgtcaaacttcttcatgaagatcttgcagctatagctgtcccagaaaaatatcataaagagaagaagatctccatgttgaccaaaaaacgaagaagatctccattgaaatgtgggccacacatcaatccagataacccacgagcctgcgtgtcgcgtcggggtcgctactcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

158

Amino Acids

17.71

Weight (kDa)

9.51

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AccII CGCG 2 cut(s) 228, 457
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 170, 218
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 3 cut(s) 218, 290, 409
AluBI AGCT 4 cut(s) 30, 151, 332, 338
AluI AGCT 4 cut(s) 30, 151, 332, 338
AlwI GGATC 1 cut(s) 152
Aor51HI AGCGCT 1 cut(s) 67
AoxI GGCC 2 cut(s) 94, 416
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 170, 218
AsiSI GCGATCGC 1 cut(s) 232
AspA2I CCTAGG 1 cut(s) 76
AspLEI GCGC 2 cut(s) 68, 228
AspS9I GGNCC 2 cut(s) 108, 416
AvaII GGWCC 1 cut(s) 108
AvrII CCTAGG 1 cut(s) 76
BauI CACGAG 1 cut(s) 441
BbvI GCAGC 1 cut(s) 341
BclI TGATCA 1 cut(s) 268
BfaI CTAG 2 cut(s) 77, 278
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 96
BglII AGATCT 3 cut(s) 322, 369, 398
BisI GCNGC 1 cut(s) 330
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 108, 416
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 341
Bsh1236I CGCG 2 cut(s) 228, 457
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 96, 418
BsiEI CGRYCG 1 cut(s) 232
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 2 cut(s) 96, 418
Bsp143I GATC 6 cut(s) 157, 229, 268, 322, 369, 398
BspANI GGCC 2 cut(s) 96, 418
BspFNI CGCG 2 cut(s) 228, 457
BspHI TCATGA 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 6 cut(s) 157, 229, 268, 322, 369, 398
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 3 cut(s) 28, 149, 448
BstDEI CTNAG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 75
BstFNI CGCG 2 cut(s) 228, 457
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 228
BstKTI GATC 6 cut(s) 160, 232, 271, 325, 372, 401
BstMBI GATC 6 cut(s) 157, 229, 268, 322, 369, 398
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 102, 335
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 2 cut(s) 228, 457
BstV1I GCAGC 1 cut(s) 341
BstX2I RGATCY 3 cut(s) 322, 369, 398
BstYI RGATCY 3 cut(s) 322, 369, 398
BsuRI GGCC 2 cut(s) 96, 418
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 28, 149, 448
CciI TCATGA 1 cut(s) 316
CfoI GCGC 2 cut(s) 68, 228
Cfr13I GGNCC 2 cut(s) 108, 416
CseI GACGC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 317, 376
CviJI RGCY 9 cut(s) 5, 30, 96, 151, 275, 332, 338, 418, 446
CviKI_1 RGCY 9 cut(s) 5, 30, 96, 151, 275, 332, 338, 418, 446
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 162
DpnI GATC 6 cut(s) 159, 231, 270, 324, 371, 400
DpnII GATC 6 cut(s) 157, 229, 268, 322, 369, 398
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 108
Eco47III AGCGCT 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 320, 379
FaiI YATR 5 cut(s) 297, 318, 335, 357, 377
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 316, 375
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 2 cut(s) 77, 278
GlaI GCGC 2 cut(s) 67, 227
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 96, 418
HgaI GACGC 1 cut(s) 446
HhaI GCGC 2 cut(s) 68, 228
Hin1II CATG 2 cut(s) 320, 379
Hin6I GCGC 2 cut(s) 66, 226
HinP1I GCGC 2 cut(s) 66, 226
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 2 cut(s) 126, 141
Hpy188III TCNNGA 4 cut(s) 71, 182, 317, 431
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 102, 335
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 2 cut(s) 320, 379
HspAI GCGC 2 cut(s) 66, 226
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 6 cut(s) 157, 229, 268, 322, 369, 398
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 84, 91, 137, 167, 177, 357, 444, 460
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 77, 278
MaeIII GTNAC 1 cut(s) 19
MalI GATC 6 cut(s) 159, 231, 270, 324, 371, 400
MboI GATC 6 cut(s) 157, 229, 268, 322, 369, 398
MboII GAAGA 7 cut(s) 302, 305, 332, 376, 379, 405, 408
MflI RGATCY 3 cut(s) 322, 369, 398
MluCI AATT 2 cut(s) 170, 218
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 4 cut(s) 53, 107, 121, 242
MseI TTAA 1 cut(s) 475
MslI CAYNNNNRTG 1 cut(s) 409
MvnI CGCG 2 cut(s) 228, 457
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 102, 335
NdeII GATC 6 cut(s) 157, 229, 268, 322, 369, 398
NlaIII CATG 2 cut(s) 320, 379
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 316
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 331
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
PspPI GGNCC 2 cut(s) 108, 416
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 3 cut(s) 322, 369, 398
PsyI GACNNNGTC 1 cut(s) 302
PvuI CGATCG 1 cut(s) 232
RgaI GCGATCGC 1 cut(s) 232
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 409
SaqAI TTAA 1 cut(s) 475
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 6 cut(s) 157, 229, 268, 322, 369, 398
Sau96I GGNCC 2 cut(s) 108, 416
SchI GAGTC 1 cut(s) 136
SfaAI GCGATCGC 1 cut(s) 232
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 333
SgfI GCGATCGC 1 cut(s) 232
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 409
Sse9I AATT 2 cut(s) 170, 218
SspMI CTAG 2 cut(s) 77, 278
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 170, 218
Tru1I TTAA 1 cut(s) 475
Tru9I TTAA 1 cut(s) 475
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 305, 333
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 2 cut(s) 170, 218
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 2 cut(s) 77, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.