Rmu_sc0004732.1_g000017

Ribosomal protein L14p/L23e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004732.1
OG0020063
Physical Location & Seq
Reverse (-)
56158 .. 56652
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004732.1_g000017.1.cds

Sequence Viewer

Length: 495 bp
atggcttccattgatgctatcacagcaagctttcctgcttcccttgccctcgctgaaggaggcagcactcctgacctaggaaagattggtagtggcctcgttcgtaggtcctcccaaccttttctaataagaaaacctctgacccgcaagccggttgatcctaaggaaaaatttagggttcatggacgggctggagatttattcttgttctcctttgaattagtgtgtgatcgaaacaaggtactccgaggtgggggttggtgttttgatcgagccctggtttgctttgaagagtatgacggcgtcaaacctcttcaggaagatcttacagctattggtgttgtttctagccctagagacaagggcaaaagaaagaggttgatcttcttgcctaatactagaagtatggtcttctactactttcatcttagtttctctagttgtacaccaattgaggtctctaggcgaccaggttactgttcaaagggaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

164

Amino Acids

18.17

Weight (kDa)

9.67

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 75, 299
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 243, 445
AfiI CCNNNNNNNGG 3 cut(s) 77, 151, 253
AgsI TTSAA 3 cut(s) 218, 290, 483
AjnI CCWGG 2 cut(s) 276, 469
AluBI AGCT 2 cut(s) 30, 332
AluI AGCT 2 cut(s) 30, 332
Alw26I GTCTC 2 cut(s) 351, 463
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 108
AvaII GGWCC 1 cut(s) 108
AvrII CCTAGG 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 162
BanII GRGCYC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 2 cut(s) 278, 471
BcoDI GTCTC 2 cut(s) 351, 463
BfaI CTAG 6 cut(s) 77, 348, 354, 399, 438, 462
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 64
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 2 cut(s) 278, 471
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 278, 471
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 3 cut(s) 76, 247, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 151, 253
Bse118I RCCGGY 1 cut(s) 151
Bse21I CCTNAGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 278, 471
BseDI CCNNGG 3 cut(s) 76, 247, 276
BseLI CCNNNNNNNGG 3 cut(s) 77, 151, 253
BseXI GCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 77, 151, 253
BsmAI GTCTC 2 cut(s) 351, 463
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 277
Bsp1407I TGTACA 1 cut(s) 443
Bsp143I GATC 5 cut(s) 157, 229, 268, 322, 381
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 76, 247, 276
BssMI GATC 5 cut(s) 157, 229, 268, 322, 381
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 278, 471
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 2 cut(s) 285, 318
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 28, 149
BstDEI CTNAG 2 cut(s) 162, 428
BstENI CCTNNNNNAGG 1 cut(s) 75
BstKTI GATC 5 cut(s) 160, 232, 271, 325, 384
BstMAI GTCTC 2 cut(s) 351, 463
BstMBI GATC 5 cut(s) 157, 229, 268, 322, 381
BstMWI GCNNNNNNNGC 2 cut(s) 23, 44
BstNI CCWGG 2 cut(s) 278, 471
BstSCI CCNGG 2 cut(s) 276, 469
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 28, 149
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 469
Csp6I GTAC 2 cut(s) 242, 444
CviAII CATG 1 cut(s) 182
CviJI RGCY 8 cut(s) 5, 30, 96, 151, 191, 275, 332, 351
CviKI_1 RGCY 8 cut(s) 5, 30, 96, 151, 191, 275, 332, 351
CviQI GTAC 2 cut(s) 242, 444
DdeI CTNAG 2 cut(s) 162, 428
DpnI GATC 5 cut(s) 159, 231, 270, 324, 383
DpnII GATC 5 cut(s) 157, 229, 268, 322, 381
Eam1104I CTCTTC 2 cut(s) 285, 318
EarI CTCTTC 2 cut(s) 285, 318
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 2 cut(s) 75, 299
Eco81I CCTNAGG 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 276, 469
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 185
FaiI YATR 3 cut(s) 183, 297, 407
FatI CATG 1 cut(s) 181
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 6 cut(s) 77, 348, 354, 399, 438, 462
GluI GCNGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 28
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 2 cut(s) 141, 248
Hpy188III TCNNGA 2 cut(s) 71, 317
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 44
HpyF3I CTNAG 2 cut(s) 162, 428
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 5 cut(s) 157, 229, 268, 322, 381
LpnPI CCDG 9 cut(s) 48, 84, 165, 177, 263, 290, 302, 456, 483
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 469
MaeI CTAG 6 cut(s) 77, 348, 354, 399, 438, 462
MaeIII GTNAC 1 cut(s) 473
MalI GATC 5 cut(s) 159, 231, 270, 324, 383
MboI GATC 5 cut(s) 157, 229, 268, 322, 381
MboII GAAGA 5 cut(s) 302, 305, 332, 376, 403
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 3 cut(s) 170, 218, 450
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 278, 471
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 2 cut(s) 278, 471
MwoI GCNNNNNNNGC 2 cut(s) 23, 44
NdeII GATC 5 cut(s) 157, 229, 268, 322, 381
NlaIII CATG 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 276, 469
PspGI CCWGG 2 cut(s) 276, 469
PspPI GGNCC 1 cut(s) 108
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 2 cut(s) 243, 445
RsaNI GTAC 2 cut(s) 242, 444
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 5 cut(s) 157, 229, 268, 322, 381
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 278, 471
SduI GDGCHC 1 cut(s) 277
SexAI ACCWGGT 1 cut(s) 469
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 108
Sse9I AATT 3 cut(s) 170, 218, 450
SsiI CCGC 1 cut(s) 145
SspMI CTAG 6 cut(s) 77, 348, 354, 399, 438, 462
StyD4I CCNGG 2 cut(s) 276, 469
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 479
TaqI TCGA 2 cut(s) 232, 271
TasI AATT 3 cut(s) 170, 218, 450
TatI WGTACW 1 cut(s) 443
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 170, 413
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 1 cut(s) 170
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 6 cut(s) 77, 348, 354, 399, 438, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.