Rmu_sc0012745.1_g000001

negative regulation of oxidative stress-induced neuron death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012745.1
OG0020063
Physical Location & Seq
Reverse (-)
103 .. 501
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012745.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atggcttccattgatgctgtcacagcaagcttcactgcttcccttgcccttgctgaaggaggcaacactccagacctaggaaagattggtggtggtctcattcgcaagtcctcccaaccttttttgattggaaagcctctaacccacaagccggttgatccaaaggcagaatttaaggttcaggaacgggctggagatttattcttgttctcctttgaatcagtgtgtgaaaccaacaaggtactccgaggtgggggttggtgttttgatcaagccctgatttgctttgaagagtatgatggcgtcaaacctcttcatgaagatcttgcagctattggtactgtttctagccctagagacaagggcaaagttttaaactttcctgttcatcttgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

132

Amino Acids

14.11

Weight (kDa)

5.88

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 243, 340
AfiI CCNNNNNNNGG 3 cut(s) 77, 151, 253
AgsI TTSAA 2 cut(s) 218, 290
AluBI AGCT 2 cut(s) 30, 332
AluI AGCT 2 cut(s) 30, 332
Alw26I GTCTC 2 cut(s) 101, 351
AlwI GGATC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 76
AvrII CCTAGG 1 cut(s) 76
BbvI GCAGC 1 cut(s) 341
BccI CCATC 1 cut(s) 293
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 101, 351
BfaI CTAG 3 cut(s) 77, 348, 354
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 330
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 1 cut(s) 331
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 2 cut(s) 54, 213
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 76, 247
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 151, 253
Bse118I RCCGGY 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 76, 247
BseLI CCNNNNNNNGG 3 cut(s) 77, 151, 253
BseXI GCAGC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 77, 151, 253
BsmAI GTCTC 2 cut(s) 101, 351
Bso31I GGTCTC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 157, 268, 322
BspHI TCATGA 1 cut(s) 316
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 76, 247
BssMI GATC 3 cut(s) 157, 268, 322
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 285, 318
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 28
BstKTI GATC 3 cut(s) 160, 271, 325
BstMAI GTCTC 2 cut(s) 101, 351
BstMBI GATC 3 cut(s) 157, 268, 322
BstMWI GCNNNNNNNGC 2 cut(s) 23, 44
BstV1I GCAGC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 228
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 151
CseI GACGC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 242, 339
CviAII CATG 1 cut(s) 317
CviJI RGCY 8 cut(s) 5, 30, 136, 151, 191, 275, 332, 351
CviKI_1 RGCY 8 cut(s) 5, 30, 136, 151, 191, 275, 332, 351
CviQI GTAC 2 cut(s) 242, 339
DpnI GATC 3 cut(s) 159, 270, 324
DpnII GATC 3 cut(s) 157, 268, 322
DraI TTTAAA 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 285, 318
EarI CTCTTC 2 cut(s) 285, 318
Eco130I CCWWGG 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 320
FaiI YATR 2 cut(s) 297, 318
FatI CATG 1 cut(s) 316
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 3 cut(s) 77, 348, 354
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 2 cut(s) 54, 213
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 71, 182, 317
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 44
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 157, 268, 322
LpnPI CCDG 5 cut(s) 84, 165, 167, 177, 290
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 77, 348, 354
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 159, 270, 324
MboI GATC 3 cut(s) 157, 268, 322
MboII GAAGA 3 cut(s) 302, 305, 332
MflI RGATCY 1 cut(s) 322
MluCI AATT 1 cut(s) 170
MnlI CCTC 5 cut(s) 53, 121, 147, 242, 321
MseI TTAA 2 cut(s) 174, 374
MspI CCGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 23, 44
NdeII GATC 3 cut(s) 157, 268, 322
NlaIII CATG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 316
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 331
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 2 cut(s) 243, 340
RsaNI GTAC 2 cut(s) 242, 339
SaqAI TTAA 2 cut(s) 174, 374
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 3 cut(s) 157, 268, 322
SetI ASST 8 cut(s) 32, 78, 121, 180, 243, 253, 313, 334
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 170
SspMI CTAG 3 cut(s) 77, 348, 354
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 343
TasI AATT 1 cut(s) 170
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 174, 374
Tru9I TTAA 2 cut(s) 174, 374
TscAI CASTG 2 cut(s) 40, 228
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 305, 333, 377
TspRI CASTG 2 cut(s) 40, 228
XapI RAATTY 1 cut(s) 170
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 3 cut(s) 77, 348, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.