Rmu_sc0004517.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004517.1
OG0018749
Physical Location & Seq
Reverse (-)
20290 .. 21476
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
atggacgttgataagatccttccatttagcagcaccttaggggatggcatagccttaaataaagttaagggcgaggttcaaacgaggaaaggcttacggtggatacctaggcacccagagacgaggaagggcgtagtaagcgacgaaatgcttcggggagctgaaaataagcgtagatccggggattcccgaataggcgaagcggtggagtgctgcaccctagatggcgagagtccagtagccgaaagcatcactagcttacgctctgacccgagtagcatgggacacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggcagtggcttggttaagggaacccaccgtagccgtagcgaaagcgagtcttcatagggcaattgtcactgcttctggacccgaacctgggggtgaaatgccactcgaacctagagctagctggttctccccgaaatgcgttggggcgcagcagttgactggacatctaggggtacagcactgtttcggtgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactggatatgacctcaaaataacagggtcaaggtcggccagtgagacggtgggggataagcttcatcgtcgagagggaaacagcccggatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtaggggtgcagagacagccaggaggtttgcctagaagcagccacccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.16

Weight (kDa)

9.42

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07706 ATMG00470
fragaria_vesca FvH4_c3g00070
malus_domestica MD15G1346300.v1.1
rosa_laevigata RLG00000000100
rosa_multiflora Rmu_sc0004517.1_g000005
rosa_samantha Rh1DG235600 Rh1DG235700 Rh7AG405400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 2 cut(s) 111, 548
AccBSI CCGCTC 1 cut(s) 546
AccII CGCG 1 cut(s) 540
AciI CCGC 4 cut(s) 203, 533, 538, 546
AclWI GGATC 3 cut(s) 10, 171, 669
AcoI YGGCCR 1 cut(s) 609
AcvI CACGTG 1 cut(s) 289
AfaI GTAC 2 cut(s) 516, 550
AfiI CCNNNNNNNGG 3 cut(s) 428, 429, 558
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 3 cut(s) 338, 427, 724
AluBI AGCT 6 cut(s) 161, 258, 458, 462, 634, 670
AluI AGCT 6 cut(s) 161, 258, 458, 462, 634, 670
Alw26I GTCTC 3 cut(s) 113, 611, 712
AlwI GGATC 3 cut(s) 10, 171, 669
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 3 cut(s) 535, 609, 674
ApeKI GCWGC 4 cut(s) 30, 213, 490, 744
Asp700I GAANNNNTTC 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 548
AspA2I CCTAGG 1 cut(s) 107
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 4 cut(s) 314, 419, 535, 675
AsuC2I CCSGG 2 cut(s) 181, 659
AsuHPI GGTGA 2 cut(s) 446, 656
AsuNHI GCTAGC 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 2 cut(s) 314, 419
AvrII CCTAGG 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 37
BanI GGYRCC 2 cut(s) 111, 548
BbrPI CACGTG 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 383
BbvI GCAGC 3 cut(s) 42, 200, 502
BccI CCATC 2 cut(s) 38, 218
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 3 cut(s) 340, 429, 726
BciVI GTATCC 1 cut(s) 96
BcnI CCSGG 2 cut(s) 181, 659
BcoDI GTCTC 3 cut(s) 113, 611, 712
BfaI CTAG 7 cut(s) 108, 221, 255, 453, 459, 509, 738
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 5 cut(s) 31, 214, 491, 538, 745
BlnI CCTAGG 1 cut(s) 107
BlsI GCNGC 5 cut(s) 32, 215, 492, 539, 746
Bme1390I CCNGG 5 cut(s) 181, 340, 429, 659, 726
Bme18I GGWCC 2 cut(s) 314, 419
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 4 cut(s) 314, 419, 535, 675
BmiI GGNNCC 5 cut(s) 113, 363, 421, 550, 677
BmrFI CCNGG 5 cut(s) 181, 340, 429, 659, 726
BmsI GCATC 1 cut(s) 258
BmtI GCTAGC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 550, 582
Bpu10I CCTNAGC 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 181, 659
BsaAI YACGTR 1 cut(s) 289
BsaJI CCNNGG 4 cut(s) 107, 180, 339, 428
Bsc4I CCNNNNNNNGG 3 cut(s) 428, 429, 558
Bse1I ACTGG 4 cut(s) 236, 505, 580, 612
Bse21I CCTNAGG 1 cut(s) 37
BseBI CCWGG 3 cut(s) 340, 429, 726
BseDI CCNNGG 4 cut(s) 107, 180, 339, 428
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 3 cut(s) 428, 429, 558
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 4 cut(s) 236, 505, 580, 612
BseXI GCAGC 3 cut(s) 42, 200, 502
BsgI GTGCAG 2 cut(s) 199, 734
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 3 cut(s) 537, 611, 676
BshNI GGYRCC 2 cut(s) 111, 548
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 2 cut(s) 180, 659
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 428, 429, 558
BsmAI GTCTC 3 cut(s) 113, 611, 712
BsmBI CGTCTC 2 cut(s) 113, 611
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 3 cut(s) 537, 611, 676
BsoBI CYCGRG 1 cut(s) 271
Bsp143I GATC 4 cut(s) 15, 176, 661, 685
BspACI CCGC 4 cut(s) 203, 533, 538, 546
BspANI GGCC 3 cut(s) 537, 611, 676
BspCNI CTCAG 1 cut(s) 704
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 5 cut(s) 113, 363, 421, 550, 677
BspOI GCTAGC 1 cut(s) 462
BspPI GGATC 3 cut(s) 10, 171, 669
BspT107I GGYRCC 2 cut(s) 111, 548
BsrBI CCGCTC 1 cut(s) 546
BsrI ACTGG 4 cut(s) 236, 505, 580, 612
BssECI CCNNGG 4 cut(s) 107, 180, 339, 428
BssMI GATC 4 cut(s) 15, 176, 661, 685
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 3 cut(s) 340, 429, 726
Bst4CI ACNGT 4 cut(s) 99, 370, 524, 622
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 460, 535
BstDEI CTNAG 3 cut(s) 37, 671, 691
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 18, 179, 664, 688
BstMAI GTCTC 3 cut(s) 113, 611, 712
BstMBI GATC 4 cut(s) 15, 176, 661, 685
BstMWI GCNNNNNNNGC 4 cut(s) 138, 255, 543, 721
BstNI CCWGG 3 cut(s) 340, 429, 726
BstSCI CCNGG 5 cut(s) 179, 338, 427, 657, 724
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 42, 200, 502
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 2 cut(s) 15, 176
BstYI RGATCY 2 cut(s) 15, 176
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 3 cut(s) 537, 611, 676
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 2 cut(s) 351, 408
BtsIMutI CAGTG 5 cut(s) 351, 408, 520, 619, 699
Cac8I GCNNGC 2 cut(s) 460, 535
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 4 cut(s) 314, 419, 535, 675
Csp6I GTAC 2 cut(s) 515, 549
CviAII CATG 1 cut(s) 280
CviQI GTAC 2 cut(s) 515, 549
DdeI CTNAG 3 cut(s) 37, 671, 691
DpnI GATC 4 cut(s) 17, 178, 663, 687
DpnII GATC 4 cut(s) 15, 176, 661, 685
EaeI YGGCCR 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 314, 419
Eco72I CACGTG 1 cut(s) 289
Eco81I CCTNAGG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 675
EcoRII CCWGG 3 cut(s) 338, 427, 724
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 2 cut(s) 113, 611
FaeI CATG 1 cut(s) 283
FaiI YATR 4 cut(s) 50, 281, 396, 582
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 526
Fnu4HI GCNGC 5 cut(s) 31, 214, 491, 538, 745
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 5 cut(s) 31, 214, 491, 538, 745
FspBI CTAG 7 cut(s) 108, 221, 255, 453, 459, 509, 738
GlaI GCGC 1 cut(s) 489
GluI GCNGC 5 cut(s) 31, 214, 491, 538, 745
HaeIII GGCC 3 cut(s) 537, 611, 676
HapII CCGG 2 cut(s) 180, 659
HhaI GCGC 1 cut(s) 490
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 5 cut(s) 185, 232, 293, 304, 388
HpaII CCGG 2 cut(s) 180, 659
HphI GGTGA 2 cut(s) 446, 656
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 2 cut(s) 268, 570
Hpy188III TCNNGA 3 cut(s) 189, 417, 644
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 2 cut(s) 146, 645
HpyAV CCTTC 2 cut(s) 29, 121
HpyCH4III ACNGT 4 cut(s) 99, 370, 524, 622
HpyCH4IV ACGT 2 cut(s) 6, 288
HpyCH4V TGCA 3 cut(s) 216, 324, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 255, 543, 721
HpyF3I CTNAG 3 cut(s) 37, 671, 691
HpySE526I ACGT 2 cut(s) 6, 288
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 1 cut(s) 488
KpnI GGTACC 1 cut(s) 552
Kzo9I GATC 4 cut(s) 15, 176, 661, 685
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 3 cut(s) 42, 200, 502
LweI GCATC 1 cut(s) 258
MaeI CTAG 7 cut(s) 108, 221, 255, 453, 459, 509, 738
MaeII ACGT 2 cut(s) 6, 288
MaeIII GTNAC 1 cut(s) 406
MalI GATC 4 cut(s) 17, 178, 663, 687
MbiI CCGCTC 1 cut(s) 546
MboI GATC 4 cut(s) 15, 176, 661, 685
MboII GAAGA 1 cut(s) 383
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 2 cut(s) 15, 176
MluCI AATT 1 cut(s) 402
MlyI GAGTC 2 cut(s) 241, 397
MnlI CCTC 8 cut(s) 67, 78, 117, 552, 596, 640, 697, 722
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 3 cut(s) 56, 66, 356
MspI CCGG 2 cut(s) 180, 659
MspR9I CCNGG 5 cut(s) 181, 340, 429, 659, 726
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 3 cut(s) 340, 429, 726
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 4 cut(s) 138, 255, 543, 721
NciI CCSGG 2 cut(s) 181, 659
NdeII GATC 4 cut(s) 15, 176, 661, 685
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 5 cut(s) 113, 363, 421, 550, 677
NmuCI GTSAC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 3 cut(s) 185, 293, 304
PkrI GCNGC 5 cut(s) 32, 215, 492, 539, 746
PleI GAGTC 2 cut(s) 240, 396
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
PpsI GAGTC 2 cut(s) 240, 396
Ppu21I YACGTR 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 338, 427, 724
PspCI CACGTG 1 cut(s) 289
PspGI CCWGG 3 cut(s) 338, 427, 724
PspN4I GGNNCC 5 cut(s) 113, 363, 421, 550, 677
PspPI GGNCC 4 cut(s) 314, 419, 535, 675
PsuI RGATCY 2 cut(s) 15, 176
RsaI GTAC 2 cut(s) 516, 550
RsaNI GTAC 2 cut(s) 515, 549
SaqAI TTAA 3 cut(s) 56, 66, 356
SatI GCNGC 5 cut(s) 31, 214, 491, 538, 745
Sau3AI GATC 4 cut(s) 15, 176, 661, 685
Sau96I GGNCC 4 cut(s) 314, 419, 535, 675
SchI GAGTC 2 cut(s) 241, 397
ScrFI CCNGG 5 cut(s) 181, 340, 429, 659, 726
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 2 cut(s) 314, 419
Sse9I AATT 1 cut(s) 402
SsiI CCGC 4 cut(s) 203, 533, 538, 546
SspMI CTAG 7 cut(s) 108, 221, 255, 453, 459, 509, 738
StyD4I CCNGG 5 cut(s) 179, 338, 427, 657, 724
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 4 cut(s) 99, 370, 524, 622
TaiI ACGT 2 cut(s) 9, 291
TaqI TCGA 3 cut(s) 447, 557, 643
TasI AATT 1 cut(s) 402
TauI GCSGC 1 cut(s) 540
TfiI GAWTC 3 cut(s) 185, 293, 304
Tru1I TTAA 3 cut(s) 56, 66, 356
Tru9I TTAA 3 cut(s) 56, 66, 356
TscAI CASTG 5 cut(s) 351, 415, 527, 619, 699
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 4 cut(s) 30, 213, 490, 744
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 383, 626
TspRI CASTG 5 cut(s) 351, 415, 527, 619, 699
VpaK11BI GGWCC 2 cut(s) 314, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XmaJI CCTAGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 7 cut(s) 108, 221, 255, 453, 459, 509, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.