Rmu_sc0004533.1_g000011

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004533.1
OG0016096
Physical Location & Seq
Forward (+)
55924 .. 57735
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004533.1_g000011.1.cds

Sequence Viewer

Length: 1812 bp
atgaaaaagccgttgaaccaaatcctccacctcaccgccgcctcttcaaacttttcccgccaaaaccaaccgtcgcattttcacctcatccaacacctcctccgcaactgtaaccactccacctccgcaaactccatccattccgtcgtgataaagtctggctctttctacgacactttcaccgccaaccatctcatcaattgctatgtcaggttccgcagaatcgactctgcagccaaggtgttcgacgaaatgcctgacccaaacgtcgtgtcgtggacgtcgctcatctccggctacgtcagcgcggatcgcccgcgagtgggtctgtggctgtttgggaggatgtcggaatgttcggttctgcccaacgagtttacttttgctactgtcattaatgcgtgttcggtgcttgctgatgttgaaaccggcagaaaaattcatgcccgtgttgaaatattgggtgtgcaaaagaaccttgttgtgtgttccgcgctggttgatatgtacgggaagtgcaatgatgttggtggcgctcggcgggtttttgagttgacgggtgggaggaatgttgttacttggacttccattattgctgcttatgcccagaacggacgaggccaggatgcgctccatctttttagggaatttaatcgtgggatgatggagcgtccgaatcatttcatgttggctagtgttgtaaatgcttgtgcgagcttgggtcgtttagtttctggcaaagttgcacatggagcagtgattcgccgtggacatgatctgaatgatgtgattgcgagtgcattggttgacatgtatgctaaatgtgggagtgttgagtattctgacaaggttttcaggcgaatcccaaatccctctgtaatagcctacacttcgatgattgtggctgctgcgaagtatggattggggaaaatgtcccttcaactctttgaagaaatgatcgatagaagaataaaacccaatgatgtcacctttgttggtgtcttgcatgcttgtagccatgcagggcttgtggatgaagggctccaacactatgaatccatgtatgagaaacatggaatatccccaaatgcaaagcatcatacttgtattgttgacatgcttggtcgaactggccgtctcaatgaggcgtacgaactggccaaatccatccaagcagaaccaaatcaacaagccttggtgtggggtacacttctttcagcgagtaggcttcgtggaagggttgacattgctgttgaagctagtagacggctaatagattccaaccaacaggtatcgggtgcatatgtcacgttgtcaaatgcttatgcgttgagtggagagtgggagaccgctcatggtcttcggtcagaaatgaagcgtactggggttaggaaagaaccgggctgcagttgggttgagattaaggactcaaattatgtgttctatgctggagatgtatcatcatgtgcacgccggagtgaggtggttactttgctgagggagttggagggtaaaatgaaacaaagaggatatgtaggagggagtataggattggtctttgttgatgtagaggaggaggccaaagaggaaattgtaggtcttcatagtgagagattggcgttgggttttgcattgctgagtataccaaaaggagtcaccattagaataatgaagaacttgagaatgtgtactgattgtcatgaagctttcaagcttatcagtgatattgttgggagggaattcattgttagagatgttaatagatttcatcactttaaaggtggctcctgcacttgtagggatttttggtga

Protein Analysis

603

Amino Acids

67.03

Weight (kDa)

8.88

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15720
fragaria_vesca FvH4_3g12520
malus_domestica MD13G1170500.v1.1
prunus_persica Prupe.1G138900_v2.0.a1
pyrus_communis pycom13g14610
rosa_chinensis RchiOBHm_Chr4g0421681
rosa_laevigata RLG00000007659
rosa_multiflora Rmu_sc0004533.1_g000011
rosa_roxburghii Rroxscaffold_5G00363920
rosa_rugosa Rorug04G0174600
rosa_samantha Rh4AG233900 Rh4BG237000 Rh4CG248800
rosa_wichuraiana Rw0G007720 Rw4G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 1352
AccI GTMKAC 2 cut(s) 1264, 1642
AccII CGCG 3 cut(s) 308, 319, 494
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 2 cut(s) 1132, 1158
AcsI RAATTY 3 cut(s) 438, 647, 1739
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 5 cut(s) 509, 1151, 1207, 1381, 1690
AfiI CCNNNNNNNGG 4 cut(s) 322, 323, 1200, 1480
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 8 cut(s) 16, 48, 425, 455, 941, 950, 1256, 1711
AjnI CCWGG 1 cut(s) 621
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AluBI AGCT 4 cut(s) 717, 1259, 1706, 1714
AluI AGCT 4 cut(s) 717, 1259, 1706, 1714
Alw21I GWGCWC 1 cut(s) 1471
Alw26I GTCTC 2 cut(s) 1142, 1340
Alw44I GTGCAC 1 cut(s) 1467
AlwI GGATC 1 cut(s) 318
AoxI GGCC 4 cut(s) 619, 1132, 1158, 1578
ApaLI GTGCAC 1 cut(s) 1467
ApeKI GCWGC 5 cut(s) 233, 596, 905, 908, 1404
ApoI RAATTY 3 cut(s) 438, 647, 1739
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 1120, 1152
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 680
AspLEI GCGC 4 cut(s) 308, 496, 536, 631
AsuC2I CCSGG 1 cut(s) 1401
AsuHPI GGTGA 5 cut(s) 25, 74, 172, 979, 1648
BaeGI GKGCMC 1 cut(s) 1471
BalI TGGCCA 1 cut(s) 1160
BanII GRGCYC 1 cut(s) 1044
BbsI GAAGAC 2 cut(s) 1352, 1592
Bbv12I GWGCWC 1 cut(s) 1471
BbvCI CCTCAGC 1 cut(s) 1496
BbvI GCAGC 5 cut(s) 245, 583, 892, 895, 1391
BccI CCATC 5 cut(s) 143, 198, 642, 658, 1175
BceAI ACGGC 3 cut(s) 750, 1119, 1283
BciT130I CCWGG 1 cut(s) 623
BcnI CCSGG 1 cut(s) 1401
BcoDI GTCTC 2 cut(s) 1142, 1340
BfaI CTAG 2 cut(s) 693, 1260
BfmI CTRYAG 2 cut(s) 231, 1405
BfoI RGCGCY 1 cut(s) 537
BisI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
BlsI GCNGC 6 cut(s) 40, 235, 598, 907, 910, 1406
Bme1390I CCNGG 2 cut(s) 623, 1401
BmiI GGNNCC 3 cut(s) 215, 1043, 1786
BmrFI CCNGG 2 cut(s) 623, 1401
BmrI ACTGGG 1 cut(s) 1392
BmsI GCATC 2 cut(s) 616, 1105
BmuI ACTGGG 1 cut(s) 1392
BpiI GAAGAC 2 cut(s) 1352, 1592
BpmI CTGGAG 1 cut(s) 1470
Bpu10I CCTNAGC 1 cut(s) 1496
BpuEI CTTGAG 1 cut(s) 1699
BpuMI CCSGG 1 cut(s) 1401
Bsa29I ATCGAT 1 cut(s) 960
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 1340
BsaJI CCNNGG 3 cut(s) 237, 766, 1194
BsaXI ACNNNNNCTCC 4 cut(s) 84, 107, 114, 137
Bsc4I CCNNNNNNNGG 4 cut(s) 322, 323, 1200, 1480
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 1135, 1161, 1387
Bse3DI GCAATG 3 cut(s) 526, 1245, 1631
BseBI CCWGG 1 cut(s) 623
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 3 cut(s) 237, 766, 1194
BseGI GGATG 7 cut(s) 87, 135, 351, 631, 666, 1039, 1167
BseLI CCNNNNNNNGG 4 cut(s) 322, 323, 1200, 1480
BseMI GCAATG 3 cut(s) 526, 1245, 1631
BseMII CTCAG 2 cut(s) 1487, 1628
BseNI ACTGG 3 cut(s) 1135, 1161, 1387
BseRI GAGGAG 3 cut(s) 89, 1586, 1589
BseSI GKGCMC 1 cut(s) 1471
BseXI GCAGC 5 cut(s) 245, 583, 892, 895, 1391
BsgI GTGCAG 1 cut(s) 1774
Bsh1236I CGCG 3 cut(s) 308, 319, 494
BshFI GGCC 4 cut(s) 621, 1134, 1160, 1580
BshVI ATCGAT 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 1471
BsiSI CCGG 4 cut(s) 294, 429, 1400, 1474
BsiWI CGTACG 1 cut(s) 1149
BslFI GGGAC 1 cut(s) 919
BslI CCNNNNNNNGG 4 cut(s) 322, 323, 1200, 1480
BsmAI GTCTC 2 cut(s) 1142, 1340
BsmBI CGTCTC 1 cut(s) 1142
BsmFI GGGAC 1 cut(s) 919
BsnI GGCC 4 cut(s) 621, 1134, 1160, 1580
Bso31I GGTCTC 1 cut(s) 1340
Bsp1286I GDGCHC 2 cut(s) 1044, 1471
Bsp143I GATC 3 cut(s) 310, 775, 957
BspANI GGCC 4 cut(s) 621, 1134, 1160, 1580
BspCNI CTCAG 2 cut(s) 1488, 1629
BspDI ATCGAT 1 cut(s) 960
BspFNI CGCG 3 cut(s) 308, 319, 494
BspHI TCATGA 1 cut(s) 1699
BspLI GGNNCC 3 cut(s) 215, 1043, 1786
BspMAI CTGCAG 2 cut(s) 235, 1409
BspPI GGATC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 1340
BsrBI CCGCTC 1 cut(s) 1352
BsrDI GCAATG 3 cut(s) 526, 1245, 1631
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 3 cut(s) 1135, 1161, 1387
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 237, 766, 1194
BssMI GATC 3 cut(s) 310, 775, 957
BssNAI GTATAC 1 cut(s) 1643
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 237, 1194
Bst1107I GTATAC 1 cut(s) 1643
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 72, 110, 391
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 317, 414, 715, 1008, 1471
BstDEI CTNAG 2 cut(s) 1496, 1637
BstDSI CCRYGG 1 cut(s) 766
BstF5I GGATG 7 cut(s) 87, 135, 351, 631, 666, 1039, 1167
BstFNI CGCG 3 cut(s) 308, 319, 494
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 4 cut(s) 308, 496, 536, 631
BstKTI GATC 3 cut(s) 313, 778, 960
BstMAI GTCTC 2 cut(s) 1142, 1340
BstMBI GATC 3 cut(s) 310, 775, 957
BstMWI GCNNNNNNNGC 5 cut(s) 303, 312, 602, 752, 1256
BstNI CCWGG 1 cut(s) 623
BstNSI RCATGY 3 cut(s) 814, 1010, 1120
BstSCI CCNGG 2 cut(s) 621, 1399
BstSFI CTRYAG 2 cut(s) 231, 1405
BstSLI GKGCMC 1 cut(s) 1471
BstUI CGCG 3 cut(s) 308, 319, 494
BstV1I GCAGC 5 cut(s) 245, 583, 892, 895, 1391
BstV2I GAAGAC 2 cut(s) 1352, 1592
BstZ17I GTATAC 1 cut(s) 1643
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 4 cut(s) 621, 1134, 1160, 1580
BsuTUI ATCGAT 1 cut(s) 960
BtgI CCRYGG 1 cut(s) 766
BtsCI GGATG 7 cut(s) 87, 135, 351, 631, 666, 1039, 1167
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 2 cut(s) 762, 1726
Cac8I GCNNGC 5 cut(s) 317, 414, 715, 1008, 1471
CciI TCATGA 1 cut(s) 1699
CfoI GCGC 4 cut(s) 308, 496, 536, 631
Cfr10I RCCGGY 1 cut(s) 428
ClaI ATCGAT 1 cut(s) 960
CseI GACGC 1 cut(s) 659
Csp6I GTAC 5 cut(s) 508, 1150, 1206, 1380, 1689
CviQI GTAC 5 cut(s) 508, 1150, 1206, 1380, 1689
DdeI CTNAG 2 cut(s) 1496, 1637
DpnI GATC 3 cut(s) 312, 777, 959
DpnII GATC 3 cut(s) 310, 775, 957
DraI TTTAAA 1 cut(s) 1777
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 1132, 1158
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 237, 1194
Eco24I GRGCYC 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 1340
EcoRI GAATTC 1 cut(s) 1739
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 237, 1194
EcoT38I GRGCYC 1 cut(s) 1044
ErhI CCWWGG 2 cut(s) 237, 1194
Esp3I CGTCTC 1 cut(s) 1142
FaqI GGGAC 1 cut(s) 919
FauI CCCGC 3 cut(s) 65, 324, 534
FauNDI CATATG 1 cut(s) 1303
FblI GTMKAC 2 cut(s) 1264, 1642
Fnu4HI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
FokI GGATG 7 cut(s) 74, 122, 358, 638, 673, 1046, 1154
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
FspBI CTAG 2 cut(s) 693, 1260
GlaI GCGC 4 cut(s) 307, 495, 535, 630
GluI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
GsuI CTGGAG 1 cut(s) 1470
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 4 cut(s) 621, 1134, 1160, 1580
HapII CCGG 4 cut(s) 294, 429, 1400, 1474
HgaI GACGC 1 cut(s) 659
HhaI GCGC 4 cut(s) 308, 496, 536, 631
Hin1I GRCGYC 1 cut(s) 281
Hin6I GCGC 4 cut(s) 306, 494, 534, 629
HinP1I GCGC 4 cut(s) 306, 494, 534, 629
HincII GTYRAC 4 cut(s) 555, 808, 1114, 1243
HindII GTYRAC 4 cut(s) 555, 808, 1114, 1243
HindIII AAGCTT 2 cut(s) 1704, 1712
HinfI GANTC 9 cut(s) 222, 227, 676, 760, 861, 1055, 1277, 1427, 1653
HpaII CCGG 4 cut(s) 294, 429, 1400, 1474
HphI GGTGA 5 cut(s) 25, 74, 172, 979, 1648
Hpy188I TCNGA 5 cut(s) 352, 675, 780, 844, 1369
Hpy188III TCNNGA 2 cut(s) 148, 1700
Hpy99I CGWCG 5 cut(s) 76, 149, 251, 272, 286
HpyAV CCTTC 3 cut(s) 947, 1031, 1230
HpyCH4III ACNGT 3 cut(s) 72, 110, 391
HpyCH4IV ACGT 4 cut(s) 267, 281, 300, 1310
HpyF10VI GCNNNNNNNGC 5 cut(s) 303, 312, 602, 752, 1256
HpyF3I CTNAG 2 cut(s) 1496, 1637
HpySE526I ACGT 4 cut(s) 267, 281, 300, 1310
Hsp92I GRCGYC 1 cut(s) 281
HspAI GCGC 4 cut(s) 306, 494, 534, 629
Kzo9I GATC 3 cut(s) 310, 775, 957
LmnI GCTCC 5 cut(s) 636, 667, 752, 1047, 1790
Lsp1109I GCAGC 5 cut(s) 245, 583, 892, 895, 1391
LweI GCATC 2 cut(s) 616, 1105
MaeI CTAG 2 cut(s) 693, 1260
MaeII ACGT 4 cut(s) 267, 281, 300, 1310
MaeIII GTNAC 6 cut(s) 110, 574, 985, 1306, 1486, 1654
MalI GATC 3 cut(s) 312, 777, 959
MbiI CCGCTC 1 cut(s) 1352
MboI GATC 3 cut(s) 310, 775, 957
MboII GAAGA 6 cut(s) 36, 962, 978, 1352, 1592, 1684
MfeI CAATTG 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 1044, 1471
MlsI TGGCCA 1 cut(s) 1160
MluCI AATT 6 cut(s) 199, 438, 647, 1432, 1590, 1739
MluNI TGGCCA 1 cut(s) 1160
MlyI GAGTC 3 cut(s) 221, 1421, 1662
MmeI TCCRAC 5 cut(s) 115, 330, 1069, 1305, 1485
Mox20I TGGCCA 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 680
MscI TGGCCA 1 cut(s) 1160
MseI TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
MslI CAYNNNNRTG 2 cut(s) 447, 893
Msp20I TGGCCA 1 cut(s) 1160
MspI CCGG 4 cut(s) 294, 429, 1400, 1474
MspR9I CCNGG 2 cut(s) 623, 1401
MunI CAATTG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 3 cut(s) 308, 319, 494
MwoI GCNNNNNNNGC 5 cut(s) 303, 312, 602, 752, 1256
NciI CCSGG 1 cut(s) 1401
NdeI CATATG 1 cut(s) 1303
NdeII GATC 3 cut(s) 310, 775, 957
NlaIV GGNNCC 3 cut(s) 215, 1043, 1786
NmeAIII GCCGAG 1 cut(s) 517
NmuCI GTSAC 3 cut(s) 985, 1306, 1654
NspI RCATGY 3 cut(s) 814, 1010, 1120
PaeI GCATGC 1 cut(s) 1010
PagI TCATGA 1 cut(s) 1699
PciI ACATGT 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 6 cut(s) 222, 676, 760, 861, 1055, 1277
Pfl23II CGTACG 1 cut(s) 1149
PkrI GCNGC 6 cut(s) 40, 235, 598, 907, 910, 1406
PleI GAGTC 3 cut(s) 221, 1421, 1661
PpsI GAGTC 3 cut(s) 221, 1421, 1661
PscI ACATGT 1 cut(s) 810
PshBI ATTAAT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspLI CGTACG 1 cut(s) 1149
PspN4I GGNNCC 3 cut(s) 215, 1043, 1786
PstI CTGCAG 2 cut(s) 235, 1409
RsaI GTAC 5 cut(s) 509, 1151, 1207, 1381, 1690
RsaNI GTAC 5 cut(s) 508, 1150, 1206, 1380, 1689
RseI CAYNNNNRTG 2 cut(s) 447, 893
SaqAI TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
SatI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
Sau3AI GATC 3 cut(s) 310, 775, 957
SchI GAGTC 3 cut(s) 221, 1421, 1662
ScrFI CCNGG 2 cut(s) 623, 1401
SduI GDGCHC 2 cut(s) 1044, 1471
SfaNI GCATC 2 cut(s) 616, 1105
SfcI CTRYAG 2 cut(s) 231, 1405
SmiMI CAYNNNNRTG 2 cut(s) 447, 893
SmlI CTYRAG 1 cut(s) 1678
SmoI CTYRAG 1 cut(s) 1678
SphI GCATGC 1 cut(s) 1010
Sse9I AATT 6 cut(s) 199, 438, 647, 1432, 1590, 1739
SspI AATATT 1 cut(s) 459
SspMI CTAG 2 cut(s) 693, 1260
StyD4I CCNGG 2 cut(s) 621, 1399
StyI CCWWGG 2 cut(s) 237, 1194
TaaI ACNGT 3 cut(s) 72, 110, 391
TaiI ACGT 4 cut(s) 270, 284, 303, 1313
TaqI TCGA 5 cut(s) 225, 246, 893, 960, 1126
TaqII GACCGA 1 cut(s) 1353
TasI AATT 6 cut(s) 199, 438, 647, 1432, 1590, 1739
TatI WGTACW 1 cut(s) 1688
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 6 cut(s) 222, 676, 760, 861, 1055, 1277
Tru1I TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
Tru9I TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
TscAI CASTG 2 cut(s) 762, 1726
TseFI GTSAC 3 cut(s) 985, 1306, 1654
TseI GCWGC 5 cut(s) 233, 596, 905, 908, 1404
Tsp45I GTSAC 3 cut(s) 985, 1306, 1654
TspGWI ACGGA 2 cut(s) 133, 627
TspRI CASTG 2 cut(s) 762, 1726
VneI GTGCAC 1 cut(s) 1467
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 3 cut(s) 438, 647, 1739
XceI RCATGY 3 cut(s) 814, 1010, 1120
XmiI GTMKAC 2 cut(s) 1264, 1642
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 693, 1260
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.