Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0016096

Physical Location & Seq

Genomic Coordinates Reverse (-)

40277983 .. 40279973

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG237000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGAAAAAGCCGTTGAACCAAATCCTCCACCCCACCGCCGCCTCTTCAAACTTTTCCCGCCAAAACCAACCGTCGCATTTTCACCTCATCCAACACCTCCTCCGCAACTGTAACCACTCCACCTCCGCAAACTCCATCCATTCCATCGTGATAAAGTCTGGCTCTTTCTACGACACTTTCACCGCCAACCATCTCATCAATTACTATGTCAGGTCCCGCAGAGTCGACTCTGCAGCCAAGGTGTTCGACGAAATGCCTGACCCAAACGTCGTGTCGTGGACGTCGCTCATCTCCGGCTACGTCAGCACGGATCGCCCGCGAGTGGGTCTGTGGCTGTTTGGGAGGATGTCGGAATGTTCGGTTCTGCCCAACGAGTTTACTTTCGCTACTGTCATTAATGCGTGTTCGGTGCTTGCTGATGTTGAAACCGGCAGAAAAATTCATGCCCGTGTTGAAATATTGGGTGTGCAAAACAACCTTGTTGTGTGTTCTGCGCTGGTTGATATGTACGGGAAGTGCAATGATGTCGGTGGCGCTAGGCGGGTTTTTGAGTTGATGGGTGGGAGGAATGTTGTTACTTGGACTTCCATTATTGCTGCTTATGCTCAGAACGGACGAGGCGAGGATGCGCTCCAGCTTTTTAGGGAATTTAATCGTGGGATGATGGAGCGTCCGAATCATTTCATGTTGGCTAGTGTTGTAAATGCTTGTGCGAGCTTGGGTCGTTTAGTTTCTGGCAAAGTTGCACATGGAGCAGTGATTCGCCGTGGACATGATCTGAATGATGTGATTGCGAGTGCATTGGTTGACATGTATGCTAAATGTGGGAGTGTTGAGTATTCTGACCAGGTTTTCAGGCGAATCCGAAATCCCTCTGTAATAGCCTACACTTCGATGATTGTGGCTGCTGCGAAGTATGGATTGGGGAAAATGTCCCTTCAACTCTTTGAAGAAATGATCGATAGAAGAATAAAACCCAATGATGTCACCTTTGTTGGTGTCTTGCATGCTTGTAGCCATGCAGGGCTTGTGGATGAAGGGCTCCAACACTATGAATCTATGTATGAGAAACATGGAATATCCCCAAATGCAAAGCATCATACTTGCATTGTTGACATGCTTGGTCGAACTGGCTTTCTCAATGAGGCGTACGAACTGGCCAAATCCATCCAAGCAGAACCAAATCAACAAGCCTTGGTGTGGGGGACACTTCTTTCAGCGAGTAGGCTTCGTGGAAGGGTTGACATTGCTGTTGAAGCTAGCAGACGGCTAATAGATTCCAACCAACAGGTATCAGGTGCATATGTCACGTTGTCAAATGCATATGCGTTGAGTGGAGAGTGGGAGACCGCTCATGGTCTTCGGTCAGAAATGAAGCGTACTGGGGTTAGGAAAGAACCCGGCTGCAGTTGGGTTGAGATCAAGGACTCAAATTATGTGTTCTATGCTGGAGATGTATCATCATGTGCACGCCGGAGTGAGGTGGTTACTTTGCTGAGGGAGTTGGAGGGTAAAATGAAACAAAGAGGATATGTAGGAGGGAGTATAGGATTGGTCTTTGTTGATATAGAGGAGGAGGCCAAAGAGGAAATTGTTGGTCTTCATAGTGAGAGATTGGCGTTGGGTTTTGCATTGCTGAGTATACCAAAAGGAGTCACCATTAGAATAATGAAGAACTTGAGAATGTGTACTGATTGTCATGAAGCTTTCAAGCTTATTAGTGATATTGTTGGGAGGGAATTCATTGTTAGAGATGTTAATAGATTTCATCACTTTAAAGGTGGCTCCTGCACTTGTAGGGATTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

603

Amino Acids

67.11

Weight (kDa)

8.7

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	88 - 135	4.5e-09	PPR repeat family
PPR_2	PF13041	189 - 217	6.3e-06	PPR repeat family
PPR	PF01535	192 - 216	3.7e-06	PPR repeat
PPR_2	PF13041	291 - 339	5.8e-09	PPR repeat family
E_motif	PF20431	414 - 473	1.8e-14	E motif
DYW_deaminase	PF14432	516 - 603	2.5e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15720
fragaria_vesca	FvH4_3g12520
malus_domestica	MD13G1170500.v1.1
prunus_persica	Prupe.1G138900_v2.0.a1
pyrus_communis	pycom13g14610
rosa_chinensis	RchiOBHm_Chr4g0421681
rosa_laevigata	RLG00000007659
rosa_multiflora	Rmu_sc0004533.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363920
rosa_rugosa	Rorug04G0174600
rosa_samantha	Rh4AG233900 Rh4BG237000 Rh4CG248800
rosa_wichuraiana	Rw0G007720 Rw4G020010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	1352
AccI	GTMKAC	2 cut(s)	225, 1642
AccII	CGCG	1 cut(s)	319
AclWI	GGATC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	1158
AcsI	RAATTY	3 cut(s)	438, 647, 1739
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	4 cut(s)	509, 1151, 1381, 1690
AfiI	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1480
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	8 cut(s)	16, 48, 425, 455, 941, 950, 1256, 1711
AjnI	CCWGG	1 cut(s)	846
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AluBI	AGCT	5 cut(s)	637, 717, 1259, 1706, 1714
AluI	AGCT	5 cut(s)	637, 717, 1259, 1706, 1714
Alw21I	GWGCWC	1 cut(s)	1471
Alw26I	GTCTC	1 cut(s)	1340
Alw44I	GTGCAC	1 cut(s)	1467
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	2 cut(s)	1158, 1578
ApaLI	GTGCAC	1 cut(s)	1467
ApeKI	GCWGC	5 cut(s)	233, 596, 905, 908, 1404
ApoI	RAATTY	3 cut(s)	438, 647, 1739
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	3 cut(s)	496, 536, 631
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	1401
AsuHPI	GGTGA	4 cut(s)	74, 172, 979, 1648
AsuNHI	GCTAGC	1 cut(s)	1259
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	1471
BalI	TGGCCA	1 cut(s)	1160
BanII	GRGCYC	1 cut(s)	1044
BbsI	GAAGAC	2 cut(s)	1352, 1592
Bbv12I	GWGCWC	1 cut(s)	1471
BbvCI	CCTCAGC	1 cut(s)	1496
BbvI	GCAGC	5 cut(s)	245, 583, 892, 895, 1391
BccI	CCATC	6 cut(s)	143, 152, 198, 550, 658, 1175
BceAI	ACGGC	2 cut(s)	750, 1283
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BciT130I	CCWGG	1 cut(s)	848
BcnI	CCSGG	1 cut(s)	1401
BcoDI	GTCTC	1 cut(s)	1340
BfaI	CTAG	3 cut(s)	537, 693, 1260
BfmI	CTRYAG	2 cut(s)	231, 1405
BfoI	RGCGCY	1 cut(s)	537
BisI	GCNGC	6 cut(s)	39, 234, 597, 906, 909, 1405
BlsI	GCNGC	6 cut(s)	40, 235, 598, 907, 910, 1406
Bme1390I	CCNGG	2 cut(s)	848, 1401
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	3 cut(s)	215, 1043, 1786
BmrFI	CCNGG	2 cut(s)	848, 1401
BmrI	ACTGGG	1 cut(s)	1392
BmsI	GCATC	2 cut(s)	616, 1105
BmtI	GCTAGC	1 cut(s)	1263
BmuI	ACTGGG	1 cut(s)	1392
BpiI	GAAGAC	2 cut(s)	1352, 1592
BpmI	CTGGAG	2 cut(s)	617, 1470
Bpu10I	CCTNAGC	1 cut(s)	1496
BpuEI	CTTGAG	1 cut(s)	1699
BpuMI	CCSGG	1 cut(s)	1401
Bsa29I	ATCGAT	1 cut(s)	960
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	1340
BsaJI	CCNNGG	3 cut(s)	237, 766, 1194
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 107, 114, 137
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1480
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	1135, 1161, 1387
Bse3DI	GCAATG	3 cut(s)	526, 1245, 1631
BseBI	CCWGG	1 cut(s)	848
BseCI	ATCGAT	1 cut(s)	960
BseDI	CCNNGG	3 cut(s)	237, 766, 1194
BseGI	GGATG	7 cut(s)	87, 135, 351, 631, 666, 1039, 1167
BseLI	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1480
BseMI	GCAATG	3 cut(s)	526, 1245, 1631
BseMII	CTCAG	3 cut(s)	620, 1487, 1628
BseNI	ACTGG	3 cut(s)	1135, 1161, 1387
BseRI	GAGGAG	3 cut(s)	89, 1586, 1589
BseSI	GKGCMC	1 cut(s)	1471
BseXI	GCAGC	5 cut(s)	245, 583, 892, 895, 1391
BsgI	GTGCAG	1 cut(s)	1774
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	1160, 1580
BshVI	ATCGAT	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	1471
BsiSI	CCGG	4 cut(s)	294, 429, 1401, 1474
BsiWI	CGTACG	1 cut(s)	1149
BslFI	GGGAC	3 cut(s)	199, 919, 1219
BslI	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1480
BsmAI	GTCTC	1 cut(s)	1340
BsmFI	GGGAC	3 cut(s)	199, 919, 1219
BsnI	GGCC	2 cut(s)	1160, 1580
Bso31I	GGTCTC	1 cut(s)	1340
Bsp1286I	GDGCHC	2 cut(s)	1044, 1471
Bsp143I	GATC	4 cut(s)	310, 775, 957, 1419
BspANI	GGCC	2 cut(s)	1160, 1580
BspCNI	CTCAG	3 cut(s)	619, 1488, 1629
BspDI	ATCGAT	1 cut(s)	960
BspFNI	CGCG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	1699
BspLI	GGNNCC	3 cut(s)	215, 1043, 1786
BspMAI	CTGCAG	2 cut(s)	235, 1409
BspOI	GCTAGC	1 cut(s)	1263
BspPI	GGATC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	1340
BsrBI	CCGCTC	1 cut(s)	1352
BsrDI	GCAATG	3 cut(s)	526, 1245, 1631
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	3 cut(s)	1135, 1161, 1387
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	3 cut(s)	237, 766, 1194
BssMI	GATC	4 cut(s)	310, 775, 957, 1419
BssNAI	GTATAC	1 cut(s)	1643
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	237, 1194
Bst1107I	GTATAC	1 cut(s)	1643
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	3 cut(s)	72, 110, 391
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	281
BstC8I	GCNNGC	6 cut(s)	317, 414, 715, 1008, 1261, 1471
BstDEI	CTNAG	3 cut(s)	606, 1496, 1637
BstDSI	CCRYGG	1 cut(s)	766
BstF5I	GGATG	7 cut(s)	87, 135, 351, 631, 666, 1039, 1167
BstFNI	CGCG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	3 cut(s)	496, 536, 631
BstKTI	GATC	4 cut(s)	313, 778, 960, 1422
BstMAI	GTCTC	1 cut(s)	1340
BstMBI	GATC	4 cut(s)	310, 775, 957, 1419
BstMWI	GCNNNNNNNGC	5 cut(s)	303, 312, 602, 752, 1256
BstNI	CCWGG	1 cut(s)	848
BstNSI	RCATGY	3 cut(s)	814, 1010, 1120
BstSCI	CCNGG	2 cut(s)	846, 1399
BstSFI	CTRYAG	2 cut(s)	231, 1405
BstSLI	GKGCMC	1 cut(s)	1471
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	5 cut(s)	245, 583, 892, 895, 1391
BstV2I	GAAGAC	2 cut(s)	1352, 1592
BstZ17I	GTATAC	1 cut(s)	1643
Bsu15I	ATCGAT	1 cut(s)	960
BsuRI	GGCC	2 cut(s)	1160, 1580
BsuTUI	ATCGAT	1 cut(s)	960
BtgI	CCRYGG	1 cut(s)	766
BtsCI	GGATG	7 cut(s)	87, 135, 351, 631, 666, 1039, 1167
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	6 cut(s)	317, 414, 715, 1008, 1261, 1471
CciI	TCATGA	1 cut(s)	1699
CfoI	GCGC	3 cut(s)	496, 536, 631
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	960
CseI	GACGC	1 cut(s)	659
CsiI	ACCWGGT	1 cut(s)	846
Csp6I	GTAC	4 cut(s)	508, 1150, 1380, 1689
CviQI	GTAC	4 cut(s)	508, 1150, 1380, 1689
DdeI	CTNAG	3 cut(s)	606, 1496, 1637
DpnI	GATC	4 cut(s)	312, 777, 959, 1421
DpnII	GATC	4 cut(s)	310, 775, 957, 1419
DraI	TTTAAA	1 cut(s)	1777
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	1158
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	237, 1194
Eco24I	GRGCYC	1 cut(s)	1044
Eco31I	GGTCTC	1 cut(s)	1340
Eco47I	GGWCC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	1739
EcoRII	CCWGG	1 cut(s)	846
EcoT14I	CCWWGG	2 cut(s)	237, 1194
EcoT22I	ATGCAT	1 cut(s)	1324
EcoT38I	GRGCYC	1 cut(s)	1044
ErhI	CCWWGG	2 cut(s)	237, 1194
FaqI	GGGAC	3 cut(s)	199, 919, 1219
FauI	CCCGC	4 cut(s)	65, 224, 324, 534
FauNDI	CATATG	2 cut(s)	1303, 1324
FblI	GTMKAC	2 cut(s)	225, 1642
Fnu4HI	GCNGC	6 cut(s)	39, 234, 597, 906, 909, 1405
FokI	GGATG	7 cut(s)	74, 122, 358, 638, 673, 1046, 1154
FriOI	GRGCYC	1 cut(s)	1044
Fsp4HI	GCNGC	6 cut(s)	39, 234, 597, 906, 909, 1405
FspBI	CTAG	3 cut(s)	537, 693, 1260
GlaI	GCGC	3 cut(s)	495, 535, 630
GluI	GCNGC	6 cut(s)	39, 234, 597, 906, 909, 1405
GsuI	CTGGAG	2 cut(s)	617, 1470
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	1160, 1580
HapII	CCGG	4 cut(s)	294, 429, 1401, 1474
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	3 cut(s)	496, 536, 631
Hin1I	GRCGYC	1 cut(s)	281
Hin6I	GCGC	3 cut(s)	494, 534, 629
HinP1I	GCGC	3 cut(s)	494, 534, 629
HincII	GTYRAC	4 cut(s)	226, 808, 1114, 1243
HindII	GTYRAC	4 cut(s)	226, 808, 1114, 1243
HindIII	AAGCTT	2 cut(s)	1704, 1712
HinfI	GANTC	9 cut(s)	222, 227, 676, 760, 861, 1055, 1277, 1427, 1653
HpaII	CCGG	4 cut(s)	294, 429, 1401, 1474
HphI	GGTGA	4 cut(s)	74, 172, 979, 1648
Hpy188I	TCNGA	7 cut(s)	352, 609, 675, 780, 844, 866, 1369
Hpy188III	TCNNGA	2 cut(s)	148, 1700
Hpy99I	CGWCG	4 cut(s)	76, 251, 272, 286
HpyAV	CCTTC	3 cut(s)	947, 1031, 1230
HpyCH4III	ACNGT	3 cut(s)	72, 110, 391
HpyCH4IV	ACGT	4 cut(s)	267, 281, 300, 1310
HpyF10VI	GCNNNNNNNGC	5 cut(s)	303, 312, 602, 752, 1256
HpyF3I	CTNAG	3 cut(s)	606, 1496, 1637
HpySE526I	ACGT	4 cut(s)	267, 281, 300, 1310
Hsp92I	GRCGYC	1 cut(s)	281
HspAI	GCGC	3 cut(s)	494, 534, 629
Kzo9I	GATC	4 cut(s)	310, 775, 957, 1419
LmnI	GCTCC	5 cut(s)	636, 667, 752, 1047, 1790
Lsp1109I	GCAGC	5 cut(s)	245, 583, 892, 895, 1391
LweI	GCATC	2 cut(s)	616, 1105
MabI	ACCWGGT	1 cut(s)	846
MaeI	CTAG	3 cut(s)	537, 693, 1260
MaeII	ACGT	4 cut(s)	267, 281, 300, 1310
MaeIII	GTNAC	6 cut(s)	110, 574, 985, 1306, 1486, 1654
MalI	GATC	4 cut(s)	312, 777, 959, 1421
MbiI	CCGCTC	1 cut(s)	1352
MboI	GATC	4 cut(s)	310, 775, 957, 1419
MboII	GAAGA	6 cut(s)	36, 962, 978, 1352, 1592, 1684
MhlI	GDGCHC	2 cut(s)	1044, 1471
MlsI	TGGCCA	1 cut(s)	1160
MluCI	AATT	6 cut(s)	199, 438, 647, 1432, 1590, 1739
MluNI	TGGCCA	1 cut(s)	1160
MlyI	GAGTC	4 cut(s)	221, 231, 1421, 1662
MmeI	TCCRAC	5 cut(s)	115, 330, 1069, 1305, 1485
Mox20I	TGGCCA	1 cut(s)	1160
Mph1103I	ATGCAT	1 cut(s)	1324
MroXI	GAANNNNTTC	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	4 cut(s)	396, 651, 1758, 1776
MslI	CAYNNNNRTG	2 cut(s)	447, 893
Msp20I	TGGCCA	1 cut(s)	1160
MspI	CCGG	4 cut(s)	294, 429, 1401, 1474
MspR9I	CCNGG	2 cut(s)	848, 1401
MvaI	CCWGG	1 cut(s)	848
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	5 cut(s)	303, 312, 602, 752, 1256
NciI	CCSGG	1 cut(s)	1401
NdeI	CATATG	2 cut(s)	1303, 1324
NdeII	GATC	4 cut(s)	310, 775, 957, 1419
NheI	GCTAGC	1 cut(s)	1259
NlaIV	GGNNCC	3 cut(s)	215, 1043, 1786
NmuCI	GTSAC	3 cut(s)	985, 1306, 1654
NsiI	ATGCAT	1 cut(s)	1324
NspI	RCATGY	3 cut(s)	814, 1010, 1120
PaeI	GCATGC	1 cut(s)	1010
PagI	TCATGA	1 cut(s)	1699
PciI	ACATGT	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	5 cut(s)	676, 760, 861, 1055, 1277
Pfl23II	CGTACG	1 cut(s)	1149
PkrI	GCNGC	6 cut(s)	40, 235, 598, 907, 910, 1406
PleI	GAGTC	4 cut(s)	221, 230, 1421, 1661
PpsI	GAGTC	4 cut(s)	221, 230, 1421, 1661
PpuMI	RGGWCCY	1 cut(s)	213
PscI	ACATGT	1 cut(s)	810
PshBI	ATTAAT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	846
PspGI	CCWGG	1 cut(s)	846
PspLI	CGTACG	1 cut(s)	1149
PspN4I	GGNNCC	3 cut(s)	215, 1043, 1786
PspPI	GGNCC	1 cut(s)	213
PspPPI	RGGWCCY	1 cut(s)	213
PstI	CTGCAG	2 cut(s)	235, 1409
RsaI	GTAC	4 cut(s)	509, 1151, 1381, 1690
RsaNI	GTAC	4 cut(s)	508, 1150, 1380, 1689
RseI	CAYNNNNRTG	2 cut(s)	447, 893
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	396, 651, 1758, 1776
SatI	GCNGC	6 cut(s)	39, 234, 597, 906, 909, 1405
Sau3AI	GATC	4 cut(s)	310, 775, 957, 1419
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	4 cut(s)	221, 231, 1421, 1662
ScrFI	CCNGG	2 cut(s)	848, 1401
SduI	GDGCHC	2 cut(s)	1044, 1471
SexAI	ACCWGGT	1 cut(s)	846
SfaNI	GCATC	2 cut(s)	616, 1105
SfcI	CTRYAG	2 cut(s)	231, 1405
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	447, 893
SmlI	CTYRAG	1 cut(s)	1678
SmoI	CTYRAG	1 cut(s)	1678
SphI	GCATGC	1 cut(s)	1010
Sse9I	AATT	6 cut(s)	199, 438, 647, 1432, 1590, 1739
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	3 cut(s)	537, 693, 1260
StyD4I	CCNGG	2 cut(s)	846, 1399
StyI	CCWWGG	2 cut(s)	237, 1194
TaaI	ACNGT	3 cut(s)	72, 110, 391
TaiI	ACGT	4 cut(s)	270, 284, 303, 1313
TaqI	TCGA	5 cut(s)	225, 246, 893, 960, 1126
TaqII	GACCGA	1 cut(s)	1353
TasI	AATT	6 cut(s)	199, 438, 647, 1432, 1590, 1739
TatI	WGTACW	1 cut(s)	1688
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	5 cut(s)	676, 760, 861, 1055, 1277
Tru1I	TTAA	4 cut(s)	396, 651, 1758, 1776
Tru9I	TTAA	4 cut(s)	396, 651, 1758, 1776
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	3 cut(s)	985, 1306, 1654
TseI	GCWGC	5 cut(s)	233, 596, 905, 908, 1404
Tsp45I	GTSAC	3 cut(s)	985, 1306, 1654
TspGWI	ACGGA	2 cut(s)	323, 627
TspRI	CASTG	1 cut(s)	762
VneI	GTGCAC	1 cut(s)	1467
VpaK11BI	GGWCC	1 cut(s)	213
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	3 cut(s)	438, 647, 1739
XceI	RCATGY	3 cut(s)	814, 1010, 1120
XmiI	GTMKAC	2 cut(s)	225, 1642
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	3 cut(s)	537, 693, 1260
ZraI	GACGTC	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	1324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.