Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016096

Physical Location & Seq

Genomic Coordinates Forward (+)

43669034 .. 43670579

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGAAAAAGCCGTTGAACCAAATCCTCCACCTCACCGCCGGCTCTTTAAACTTTTCCCGCCAAAACCAACCGTCGCATTTTCACCTCATCCAACGCCTCCTCCGCAACTGTAACCACTCCACCTCCGCAAACTCCATCCATTCCGTCGTGATAAAGTCTGGCTCTTTCTACGACACTTTCACCGCCAACCATCTCATCAATTGCTATGTCAGGTTCCGCAGAATCGACTCTGCAGCCCAGGTGTTCGACGAAATGCCTGACCCAAACGTCGTGTCGTGGACGTCGCTCATCTCCGGCTACGTCAGCACTGATCGCCCGCGAGTGGGTCTGTGGCTGTTTGGGAGGATGTCGGAATGTTCGGTTCTGCCCAACGAGTTTACTTTTGCTACTGTCATTAATGCGTGTTCGGTGCTTGCTGATGTTGAAACCGGCAGAAAAATTCATGCCCGTGTTGAAATATTGGGTGTGCAAAAGAACCTTGTTGTGTGTTCCGCGCTGGTTGATATGTACGGGAAGTGCAATGATGTTGGTGGCGCTCGGCGGGTTTTTGAGTTGACGGGTGGGAGGAATGTTGTTACTTGGACTTCCATTATTGCTGCTTATGCCCAGAACGGACGAGGCCAGGATGCGCTCCATCTTTTTAGGGAATTTAATCGTGGGATGATGGAGCGTCCGAATCATTTCATGTTGGCTAGTGTTGTAAATGCTTGTGCGAGCTTGGGTCGTTTAGTTTCTGGCAAAGTTGCACATGGAGCAGTGATTCGCCGTGGACATGATCTGAATGATGTGATTGTGAGTGCATTGGTTGACATGTATGCTAAATGTGGGAGTGTTGAGTATTCTGACAAGGTTTTCAGGCGAATCCCAAATCCCTCTGTAATAGCCTACACTTCAATGATTGTGGCTGCTGCGAAGTATGGATTGGGGAAAATGTCCCTTCAACTCTTTGAAGAAATGATTGATAGAAGAATAAAACCCAATGATGTCACCTTTGTTGGTGTCTTGCATGCTTGTAGCCATGCAGGGCTTGTGGATGAAGGGCTCCAACACTATGAATCCATGTATGAGAAACATGGAATATCCCCAAATGCAAAGCATCATACTTGTATTGTTGACATGCTTGGTCGAACTGGCCGTCTCAATGAGGCGTACGAACTGGCCAAATCCATCCAAGCAGAACCAAATCAACAAGCCTTGGGTGGGGGACACTTCTTTCAGCGAGTAGGCTTCGTGGAAGGGTTGACATTGCTGTTGAAGCTAAACCGGGCTGCAGTTGGGTTGAGATTAAGGACTCAAATTATGTGTTCTATGCTGGAGATGTCATCATGTGCACGCCGGACTGAGGTGGTTACTTTGCTGAGGGAGTTGGAGGGAAAAATGAAACAAAGAGGATATGTAGGGGGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

469

Amino Acids

52.02

Weight (kDa)

9.29

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	88 - 135	3.2e-09	PPR repeat family
PPR_2	PF13041	291 - 339	4.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15720
fragaria_vesca	FvH4_3g12520
malus_domestica	MD13G1170500.v1.1
prunus_persica	Prupe.1G138900_v2.0.a1
pyrus_communis	pycom13g14610
rosa_chinensis	RchiOBHm_Chr4g0421681
rosa_laevigata	RLG00000007659
rosa_multiflora	Rmu_sc0004533.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363920
rosa_rugosa	Rorug04G0174600
rosa_samantha	Rh4AG233900 Rh4BG237000 Rh4CG248800
rosa_wichuraiana	Rw0G007720 Rw4G020010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	284
AccII	CGCG	2 cut(s)	319, 494
AciI	CCGC	9 cut(s)	36, 58, 103, 126, 183, 217, 317, 492, 541
AcoI	YGGCCR	2 cut(s)	1132, 1158
AcsI	RAATTY	2 cut(s)	438, 647
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	2 cut(s)	509, 1151
AfiI	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1342
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	7 cut(s)	16, 425, 455, 894, 941, 950, 1255
AjnI	CCWGG	2 cut(s)	237, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AluBI	AGCT	2 cut(s)	717, 1258
AluI	AGCT	2 cut(s)	717, 1258
Alw21I	GWGCWC	1 cut(s)	1333
Alw26I	GTCTC	1 cut(s)	1142
Alw44I	GTGCAC	1 cut(s)	1329
AoxI	GGCC	3 cut(s)	619, 1132, 1158
ApaLI	GTGCAC	1 cut(s)	1329
ApeKI	GCWGC	5 cut(s)	233, 596, 905, 908, 1268
ApoI	RAATTY	2 cut(s)	438, 647
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 1120, 1152
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	3 cut(s)	496, 536, 631
AsuC2I	CCSGG	1 cut(s)	1265
AsuHPI	GGTGA	4 cut(s)	25, 74, 172, 979
BaeGI	GKGCMC	1 cut(s)	1333
BalI	TGGCCA	1 cut(s)	1160
BanII	GRGCYC	1 cut(s)	1044
Bbv12I	GWGCWC	1 cut(s)	1333
BbvCI	CCTCAGC	1 cut(s)	1358
BbvI	GCAGC	5 cut(s)	245, 583, 892, 895, 1255
BccI	CCATC	5 cut(s)	143, 198, 642, 658, 1175
BceAI	ACGGC	2 cut(s)	750, 1119
BciT130I	CCWGG	2 cut(s)	239, 623
BcnI	CCSGG	1 cut(s)	1265
BcoDI	GTCTC	1 cut(s)	1142
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	2 cut(s)	231, 1269
BfoI	RGCGCY	1 cut(s)	537
BisI	GCNGC	5 cut(s)	234, 597, 906, 909, 1269
BlsI	GCNGC	5 cut(s)	235, 598, 907, 910, 1270
Bme1390I	CCNGG	3 cut(s)	239, 623, 1265
BmiI	GGNNCC	2 cut(s)	215, 1043
BmrFI	CCNGG	3 cut(s)	239, 623, 1265
BmsI	GCATC	2 cut(s)	616, 1105
BpmI	CTGGAG	1 cut(s)	1334
Bpu10I	CCTNAGC	1 cut(s)	1358
BpuMI	CCSGG	1 cut(s)	1265
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	237, 766, 1194
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 107, 114, 137
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1342
Bse118I	RCCGGY	2 cut(s)	38, 428
Bse1I	ACTGG	2 cut(s)	1135, 1161
Bse3DI	GCAATG	2 cut(s)	526, 1244
BseBI	CCWGG	2 cut(s)	239, 623
BseDI	CCNNGG	3 cut(s)	237, 766, 1194
BseGI	GGATG	7 cut(s)	87, 135, 351, 631, 666, 1039, 1167
BseLI	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1342
BseMI	GCAATG	2 cut(s)	526, 1244
BseMII	CTCAG	2 cut(s)	1332, 1349
BseNI	ACTGG	2 cut(s)	1135, 1161
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	1333
BseXI	GCAGC	5 cut(s)	245, 583, 892, 895, 1255
Bsh1236I	CGCG	2 cut(s)	319, 494
BshFI	GGCC	3 cut(s)	621, 1134, 1160
BsiHKAI	GWGCWC	1 cut(s)	1333
BsiSI	CCGG	5 cut(s)	39, 294, 429, 1264, 1336
BsiWI	CGTACG	1 cut(s)	1149
BslFI	GGGAC	2 cut(s)	919, 1218
BslI	CCNNNNNNNGG	4 cut(s)	322, 323, 1200, 1342
BsmAI	GTCTC	1 cut(s)	1142
BsmBI	CGTCTC	1 cut(s)	1142
BsmFI	GGGAC	2 cut(s)	919, 1218
BsnI	GGCC	3 cut(s)	621, 1134, 1160
Bsp1286I	GDGCHC	2 cut(s)	1044, 1333
Bsp143I	GATC	2 cut(s)	310, 775
BspACI	CCGC	9 cut(s)	36, 58, 103, 126, 183, 217, 317, 492, 541
BspANI	GGCC	3 cut(s)	621, 1134, 1160
BspCNI	CTCAG	2 cut(s)	1333, 1350
BspFNI	CGCG	2 cut(s)	319, 494
BspLI	GGNNCC	2 cut(s)	215, 1043
BspMAI	CTGCAG	2 cut(s)	235, 1273
BsrDI	GCAATG	2 cut(s)	526, 1244
BsrFI	RCCGGY	2 cut(s)	38, 428
BsrI	ACTGG	2 cut(s)	1135, 1161
BssAI	RCCGGY	2 cut(s)	38, 428
BssECI	CCNNGG	3 cut(s)	237, 766, 1194
BssMI	GATC	2 cut(s)	310, 775
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	1194
Bst2UI	CCWGG	2 cut(s)	239, 623
Bst4CI	ACNGT	3 cut(s)	72, 110, 391
BstACI	GRCGYC	1 cut(s)	281
BstC8I	GCNNGC	6 cut(s)	40, 317, 414, 715, 1008, 1333
BstDEI	CTNAG	2 cut(s)	1341, 1358
BstDSI	CCRYGG	1 cut(s)	766
BstF5I	GGATG	7 cut(s)	87, 135, 351, 631, 666, 1039, 1167
BstFNI	CGCG	2 cut(s)	319, 494
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	3 cut(s)	496, 536, 631
BstKTI	GATC	2 cut(s)	313, 778
BstMAI	GTCTC	1 cut(s)	1142
BstMBI	GATC	2 cut(s)	310, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	102, 303, 312, 602, 752, 1255
BstNI	CCWGG	2 cut(s)	239, 623
BstNSI	RCATGY	3 cut(s)	814, 1010, 1120
BstSCI	CCNGG	3 cut(s)	237, 621, 1263
BstSFI	CTRYAG	2 cut(s)	231, 1269
BstSLI	GKGCMC	1 cut(s)	1333
BstUI	CGCG	2 cut(s)	319, 494
BstV1I	GCAGC	5 cut(s)	245, 583, 892, 895, 1255
BsuRI	GGCC	3 cut(s)	621, 1134, 1160
BtgI	CCRYGG	1 cut(s)	766
BtsCI	GGATG	7 cut(s)	87, 135, 351, 631, 666, 1039, 1167
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	306, 762
Cac8I	GCNNGC	6 cut(s)	40, 317, 414, 715, 1008, 1333
CfoI	GCGC	3 cut(s)	496, 536, 631
Cfr10I	RCCGGY	2 cut(s)	38, 428
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	2 cut(s)	508, 1150
CspCI	CAANNNNNGTGG	2 cut(s)	882, 917
CviQI	GTAC	2 cut(s)	508, 1150
DdeI	CTNAG	2 cut(s)	1341, 1358
DpnI	GATC	2 cut(s)	312, 777
DpnII	GATC	2 cut(s)	310, 775
DraI	TTTAAA	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	1132, 1158
Eco130I	CCWWGG	1 cut(s)	1194
Eco24I	GRGCYC	1 cut(s)	1044
EcoRII	CCWGG	2 cut(s)	237, 621
EcoT14I	CCWWGG	1 cut(s)	1194
EcoT38I	GRGCYC	1 cut(s)	1044
ErhI	CCWWGG	1 cut(s)	1194
Esp3I	CGTCTC	1 cut(s)	1142
FaqI	GGGAC	2 cut(s)	919, 1218
FauI	CCCGC	3 cut(s)	65, 324, 534
Fnu4HI	GCNGC	5 cut(s)	234, 597, 906, 909, 1269
FokI	GGATG	7 cut(s)	74, 122, 358, 638, 673, 1046, 1154
FriOI	GRGCYC	1 cut(s)	1044
Fsp4HI	GCNGC	5 cut(s)	234, 597, 906, 909, 1269
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	3 cut(s)	495, 535, 630
GluI	GCNGC	5 cut(s)	234, 597, 906, 909, 1269
GsuI	CTGGAG	1 cut(s)	1334
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	3 cut(s)	621, 1134, 1160
HapII	CCGG	5 cut(s)	39, 294, 429, 1264, 1336
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	3 cut(s)	496, 536, 631
Hin1I	GRCGYC	1 cut(s)	281
Hin6I	GCGC	3 cut(s)	494, 534, 629
HinP1I	GCGC	3 cut(s)	494, 534, 629
HincII	GTYRAC	4 cut(s)	555, 808, 1114, 1242
HindII	GTYRAC	4 cut(s)	555, 808, 1114, 1242
HinfI	GANTC	7 cut(s)	222, 227, 676, 760, 861, 1055, 1291
HpaII	CCGG	5 cut(s)	39, 294, 429, 1264, 1336
HphI	GGTGA	4 cut(s)	25, 74, 172, 979
Hpy166II	GTNNAC	8 cut(s)	279, 378, 555, 770, 808, 1114, 1242, 1331
Hpy188I	TCNGA	4 cut(s)	352, 675, 780, 844
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	8 cut(s)	279, 378, 555, 770, 808, 1114, 1242, 1331
Hpy99I	CGWCG	5 cut(s)	76, 149, 251, 272, 286
HpyAV	CCTTC	3 cut(s)	947, 1031, 1229
HpyCH4III	ACNGT	3 cut(s)	72, 110, 391
HpyCH4IV	ACGT	3 cut(s)	267, 281, 300
HpyF10VI	GCNNNNNNNGC	6 cut(s)	102, 303, 312, 602, 752, 1255
HpyF3I	CTNAG	2 cut(s)	1341, 1358
HpySE526I	ACGT	3 cut(s)	267, 281, 300
Hsp92I	GRCGYC	1 cut(s)	281
HspAI	GCGC	3 cut(s)	494, 534, 629
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	310, 775
LmnI	GCTCC	4 cut(s)	636, 667, 752, 1047
Lsp1109I	GCAGC	5 cut(s)	245, 583, 892, 895, 1255
LweI	GCATC	2 cut(s)	616, 1105
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	3 cut(s)	267, 281, 300
MaeIII	GTNAC	4 cut(s)	110, 574, 985, 1348
MalI	GATC	2 cut(s)	312, 777
MboI	GATC	2 cut(s)	310, 775
MboII	GAAGA	2 cut(s)	962, 978
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	1044, 1333
MlsI	TGGCCA	1 cut(s)	1160
MluCI	AATT	4 cut(s)	199, 438, 647, 1296
MluNI	TGGCCA	1 cut(s)	1160
MlyI	GAGTC	2 cut(s)	221, 1285
MmeI	TCCRAC	4 cut(s)	115, 330, 1069, 1347
Mox20I	TGGCCA	1 cut(s)	1160
MroNI	GCCGGC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	4 cut(s)	47, 396, 651, 1286
MslI	CAYNNNNRTG	2 cut(s)	447, 893
Msp20I	TGGCCA	1 cut(s)	1160
MspI	CCGG	5 cut(s)	39, 294, 429, 1264, 1336
MspR9I	CCNGG	3 cut(s)	239, 623, 1265
MunI	CAATTG	1 cut(s)	199
MvaI	CCWGG	2 cut(s)	239, 623
MvnI	CGCG	2 cut(s)	319, 494
MwoI	GCNNNNNNNGC	6 cut(s)	102, 303, 312, 602, 752, 1255
NaeI	GCCGGC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	1265
NdeII	GATC	2 cut(s)	310, 775
NgoMIV	GCCGGC	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	215, 1043
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	985
NspI	RCATGY	3 cut(s)	814, 1010, 1120
PaeI	GCATGC	1 cut(s)	1010
PciI	ACATGT	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	1132
PdiI	GCCGGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	5 cut(s)	222, 676, 760, 861, 1055
Pfl23II	CGTACG	1 cut(s)	1149
PkrI	GCNGC	5 cut(s)	235, 598, 907, 910, 1270
PleI	GAGTC	2 cut(s)	221, 1285
PpsI	GAGTC	2 cut(s)	221, 1285
PscI	ACATGT	1 cut(s)	810
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	237, 621
PspGI	CCWGG	2 cut(s)	237, 621
PspLI	CGTACG	1 cut(s)	1149
PspN4I	GGNNCC	2 cut(s)	215, 1043
PstI	CTGCAG	2 cut(s)	235, 1273
RsaI	GTAC	2 cut(s)	509, 1151
RsaNI	GTAC	2 cut(s)	508, 1150
RseI	CAYNNNNRTG	2 cut(s)	447, 893
SaqAI	TTAA	4 cut(s)	47, 396, 651, 1286
SatI	GCNGC	5 cut(s)	234, 597, 906, 909, 1269
Sau3AI	GATC	2 cut(s)	310, 775
SchI	GAGTC	2 cut(s)	221, 1285
ScrFI	CCNGG	3 cut(s)	239, 623, 1265
SduI	GDGCHC	2 cut(s)	1044, 1333
SfaNI	GCATC	2 cut(s)	616, 1105
SfcI	CTRYAG	2 cut(s)	231, 1269
SmiMI	CAYNNNNRTG	2 cut(s)	447, 893
SphI	GCATGC	1 cut(s)	1010
Sse9I	AATT	4 cut(s)	199, 438, 647, 1296
SsiI	CCGC	9 cut(s)	36, 58, 103, 126, 183, 217, 317, 492, 541
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	3 cut(s)	237, 621, 1263
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	3 cut(s)	72, 110, 391
TaiI	ACGT	3 cut(s)	270, 284, 303
TaqI	TCGA	3 cut(s)	225, 246, 1126
TasI	AATT	4 cut(s)	199, 438, 647, 1296
TfiI	GAWTC	5 cut(s)	222, 676, 760, 861, 1055
Tru1I	TTAA	4 cut(s)	47, 396, 651, 1286
Tru9I	TTAA	4 cut(s)	47, 396, 651, 1286
TscAI	CASTG	2 cut(s)	313, 762
TseFI	GTSAC	1 cut(s)	985
TseI	GCWGC	5 cut(s)	233, 596, 905, 908, 1268
Tsp45I	GTSAC	1 cut(s)	985
TspDTI	ATGAA	6 cut(s)	17, 431, 673, 1050, 1068, 1394
TspGWI	ACGGA	2 cut(s)	133, 627
TspRI	CASTG	2 cut(s)	313, 762
VneI	GTGCAC	1 cut(s)	1329
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	2 cut(s)	438, 647
XceI	RCATGY	3 cut(s)	814, 1010, 1120
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	1 cut(s)	693
ZraI	GACGTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.