Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016096

Physical Location & Seq

Genomic Coordinates Reverse (-)

30677082 .. 30677956

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0174600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGAAGCTTCTTGAGGTTTAAGTCTCATATATATACAGATGAATTGGTCCCTGATTACTACCACGACTATTGCATATTGTTCTGTCCATTGAGAAGCAAGTTGGAGGCAGAGAAGAGAGGTTTGTTAGTGAATGATAATAATCATCATGTGAAGGCTGATCTTTTCTCTCTTTTACTCTCTTCTCAAAAGTCTCCATTCAGTGTTCTATTTCCAGGAAGTCCTGAATTTCTAAAGTGGTTCCCCTGTCAAGAGGATTTCAAAGGGTCCCGACCGTTTGAATTTCATATTCAAGTCCTTGGTAATTTCACATGGCAGAACACAGGATTGGCTCTATGTGTTGCTTGCAACGAATTTATATATTGGGATTTCAAAATTCGTATCAATGAAGAAATAATGTGGAGTGAATTTGGTACTCCTTCCGAATTGAACGGAGCCTACTATACTGGTGGGGCTCGTATATGGCTGCACTATATTCCGTTCAATAGGATGTCTTCTACGCGTTCGTCTGGTTATAGGCGTCCGCTGCCACCTTTTGAATGTCGAGTTACTATTTATGAAACAAGAATCTCACGTAACCATGTTCCCTTGAAAATAAACTGCGGAATTTACCTGGTGATGCCACCAAATGAAGAGTGTATGAAATTATGCCATGCACAAAACTTCACGGATAGACTCGAAGCAGGTCTCTTTCTTTTCATTGTGGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

237

Amino Acids

27.75

Weight (kDa)

6.7

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15720
fragaria_vesca	FvH4_3g12520
malus_domestica	MD13G1170500.v1.1
prunus_persica	Prupe.1G138900_v2.0.a1
pyrus_communis	pycom13g14610
rosa_chinensis	RchiOBHm_Chr4g0421681
rosa_laevigata	RLG00000007659
rosa_multiflora	Rmu_sc0004533.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363920
rosa_rugosa	Rorug04G0174600
rosa_samantha	Rh4AG233900 Rh4BG237000 Rh4CG248800
rosa_wichuraiana	Rw0G007720 Rw4G020010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	674
AccII	CGCG	1 cut(s)	502
AciI	CCGC	2 cut(s)	524, 603
AcsI	RAATTY	6 cut(s)	227, 281, 353, 375, 407, 606
AcyI	GRCGYC	1 cut(s)	520
AfaI	GTAC	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	8 cut(s)	262, 281, 293, 373, 430, 484, 539, 592
AjnI	CCWGG	2 cut(s)	214, 612
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	3 cut(s)	30, 198, 692
ApeKI	GCWGC	2 cut(s)	466, 526
ApoI	RAATTY	6 cut(s)	227, 281, 353, 375, 407, 606
AspS9I	GGNCC	2 cut(s)	49, 267
AsuHPI	GGTGA	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	49, 267
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	453, 513
BciT130I	CCWGG	2 cut(s)	216, 614
BcoDI	GTCTC	3 cut(s)	30, 198, 692
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	2 cut(s)	467, 527
BlsI	GCNGC	2 cut(s)	468, 528
Bme1390I	CCNGG	2 cut(s)	216, 614
Bme18I	GGWCC	2 cut(s)	49, 267
BmgT120I	GGNCC	2 cut(s)	49, 267
BmiI	GGNNCC	5 cut(s)	51, 242, 268, 269, 436
BmrFI	CCNGG	2 cut(s)	216, 614
BmsI	GCATC	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	451
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	216, 614
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	495
BseJI	GATNNNNATC	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	453, 513
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	35, 253
BsmAI	GTCTC	3 cut(s)	30, 198, 692
BsmFI	GGGAC	2 cut(s)	35, 253
Bso31I	GGTCTC	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	524, 603
BspFNI	CGCG	1 cut(s)	502
BspLI	GGNNCC	5 cut(s)	51, 242, 268, 269, 436
BspMI	ACCTGC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	520
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	216, 614
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	3 cut(s)	110, 187, 627
BstACI	GRCGYC	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	495
BstFNI	CGCG	1 cut(s)	502
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	3 cut(s)	30, 198, 692
BstMBI	GATC	1 cut(s)	160
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNI	CCWGG	2 cut(s)	216, 614
BstSCI	CCNGG	2 cut(s)	214, 612
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	453, 513
BstV2I	GAAGAC	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	49, 267
CseI	GACGC	1 cut(s)	509
CsiI	ACCWGGT	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	414
CspCI	CAANNNNNGTGG	2 cut(s)	53, 88
CviAII	CATG	4 cut(s)	149, 312, 581, 653
CviJI	RGCY	6 cut(s)	9, 158, 332, 437, 455, 466
CviKI_1	RGCY	6 cut(s)	9, 158, 332, 437, 455, 466
CviQI	GTAC	1 cut(s)	414
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	3 cut(s)	110, 187, 627
EarI	CTCTTC	3 cut(s)	110, 187, 627
Eco130I	CCWWGG	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	2 cut(s)	49, 267
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	214, 612
EcoT14I	CCWWGG	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	4 cut(s)	152, 315, 584, 656
FaqI	GGGAC	2 cut(s)	35, 253
FatI	CATG	4 cut(s)	148, 311, 580, 652
Fnu4HI	GCNGC	2 cut(s)	467, 527
FokI	GGATG	1 cut(s)	502
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	2 cut(s)	467, 527
GluI	GCNGC	2 cut(s)	467, 527
HgaI	GACGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	4 cut(s)	152, 315, 584, 656
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	2 cut(s)	567, 675
HphI	GGTGA	1 cut(s)	628
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	13, 224, 251, 270
HpyAV	CCTTC	2 cut(s)	148, 429
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	4 cut(s)	75, 348, 469, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpySE526I	ACGT	1 cut(s)	574
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	4 cut(s)	152, 315, 584, 656
KflI	GGGWCCC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	2 cut(s)	453, 513
LweI	GCATC	1 cut(s)	609
MabI	ACCWGGT	1 cut(s)	612
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	2 cut(s)	547, 575
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	5 cut(s)	127, 174, 401, 486, 644
MhlI	GDGCHC	1 cut(s)	457
MluI	ACGCGT	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	669
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	9, 100, 113, 247
MseI	TTAA	2 cut(s)	21, 712
MspA1I	CMGCKG	1 cut(s)	526
MspR9I	CCNGG	2 cut(s)	216, 614
MvaI	CCWGG	2 cut(s)	216, 614
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	526
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	152, 315, 584, 656
NlaIV	GGNNCC	5 cut(s)	51, 242, 268, 269, 436
PfeI	GAWTC	1 cut(s)	567
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	468, 528
PleI	GAGTC	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	669
Ppu21I	YACGTR	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	214, 612
PspGI	CCWGG	2 cut(s)	214, 612
PspN4I	GGNNCC	5 cut(s)	51, 242, 268, 269, 436
PspPI	GGNCC	2 cut(s)	49, 267
PspPPI	RGGWCCY	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	422, 454
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	21, 712
SatI	GCNGC	2 cut(s)	467, 527
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	2 cut(s)	49, 267
SchI	GAGTC	1 cut(s)	669
ScrFI	CCNGG	2 cut(s)	216, 614
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	7 cut(s)	11, 20, 124, 535, 577, 615, 688
SexAI	ACCWGGT	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	609
SinI	GGWCC	2 cut(s)	49, 267
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SsiI	CCGC	2 cut(s)	524, 603
StyD4I	CCNGG	2 cut(s)	214, 612
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	544, 678
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	21, 712
Tru9I	TTAA	2 cut(s)	21, 712
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	2 cut(s)	466, 526
TspDTI	ATGAA	7 cut(s)	57, 275, 402, 573, 645, 656, 688
TspGWI	ACGGA	3 cut(s)	447, 468, 683
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	49, 267
XapI	RAATTY	6 cut(s)	227, 281, 353, 375, 407, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.