Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004553.1

Orthogroup ID

OG0018779

Physical Location & Seq

Genomic Coordinates Forward (+)

39340 .. 39870

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgagtgatgaatccaaagcatatcggctctttgatccaacaaccaatcgtattgtgatcaacaatgatgtgatttttgaagaagataagtgctgggattgggaaagaagttcagaagagacaaaggtagatgtgttagattggggagaaactaaagaagagaggaacgaactcactcaaggtgaagatgaagatgattcaaatgataatacagaaggtgaggtagcaaatgggtcaacttcaagtcatggtgaagtggcaggtgactcggattcaaatcaatcttcagaagaagctcaagaagatgggagggttggcagaccacctgtgtggatggaagattatgagagtggagagggattgtcagaagaagaagtgagtcaaaactttgtgttgtttacttcagcatctgatccagccactgaagtgagtcaaaactttgtgttgtttactttagcatctgatccagccactttcgaagaagctatccaaagtgacaaatggaggaacgcaatggatattgagatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

176

Amino Acids

19.78

Weight (kDa)

4.05

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_retrovirus	PF25597	2 - 39	5.6e-11	Retroviral polymerase SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19621 FvH4_3g45131 FvH4_5g34741 FvH4_6g26671
rosa_multiflora	Rmu_co8341233.1_g000001 Rmu_co8379441.1_g000001 Rmu_sc0004553.1_g000011 Rmu_sc0008215.1_g000005
rosa_samantha	Rh4DG385800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	251
AclWI	GGATC	3 cut(s)	29, 407, 458
AcuI	CTGAAG	3 cut(s)	270, 387, 444
AgsI	TTSAA	4 cut(s)	80, 201, 243, 276
AleI	CACNNNNGTG	2 cut(s)	328, 425
AluBI	AGCT	2 cut(s)	296, 485
AluI	AGCT	2 cut(s)	296, 485
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	3 cut(s)	29, 407, 458
AlwNI	CAGNNNCTG	2 cut(s)	410, 422
AsuHPI	GGTGA	4 cut(s)	194, 230, 263, 275
AsuII	TTCGAA	1 cut(s)	477
BccI	CCATC	2 cut(s)	299, 328
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	251
BmsI	GCATC	2 cut(s)	416, 467
Bpu14I	TTCGAA	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	162, 282
BsaBI	GATNNNNATC	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	276
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	519
BseYI	CCCAGC	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	34, 57, 412, 463
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	3 cut(s)	29, 407, 458
BspT104I	TTCGAA	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	519
BssMI	GATC	4 cut(s)	34, 57, 412, 463
Bst6I	CTCTTC	2 cut(s)	111, 153
BstBI	TTCGAA	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	4 cut(s)	37, 60, 415, 466
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	4 cut(s)	34, 57, 412, 463
BstXI	CCANNNNNNTGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	251
CaiI	CAGNNNCTG	2 cut(s)	410, 422
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	5 cut(s)	28, 296, 419, 470, 485
CviKI_1	RGCY	5 cut(s)	28, 296, 419, 470, 485
DpnI	GATC	4 cut(s)	36, 59, 414, 465
DpnII	GATC	4 cut(s)	34, 57, 412, 463
Eam1104I	CTCTTC	2 cut(s)	111, 153
EarI	CTCTTC	2 cut(s)	111, 153
Eco57I	CTGAAG	3 cut(s)	270, 387, 444
FaeI	CATG	1 cut(s)	251
FaiI	YATR	4 cut(s)	22, 249, 345, 529
FatI	CATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	57
FokI	GGATG	1 cut(s)	346
GsaI	CCCAGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	6 cut(s)	11, 197, 266, 272, 379, 430
HphI	GGTGA	4 cut(s)	194, 230, 263, 275
Hpy166II	GTNNAC	3 cut(s)	237, 399, 450
Hpy188I	TCNGA	6 cut(s)	115, 271, 289, 367, 412, 463
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	3 cut(s)	237, 399, 450
HpyAV	CCTTC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	34, 57, 412, 463
LpnPI	CCDG	5 cut(s)	79, 246, 339, 429, 480
LweI	GCATC	2 cut(s)	416, 467
MaeIII	GTNAC	2 cut(s)	263, 494
MalI	GATC	4 cut(s)	36, 59, 414, 465
MboI	GATC	4 cut(s)	34, 57, 412, 463
MlyI	GAGTC	3 cut(s)	260, 388, 439
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	5 cut(s)	156, 214, 303, 349, 498
MslI	CAYNNNNRTG	2 cut(s)	328, 425
NdeII	GATC	4 cut(s)	34, 57, 412, 463
NlaIII	CATG	1 cut(s)	251
NmuCI	GTSAC	2 cut(s)	263, 494
NspV	TTCGAA	1 cut(s)	477
OliI	CACNNNNGTG	2 cut(s)	328, 425
PaqCI	CACCTGC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	11, 197, 272
PleI	GAGTC	3 cut(s)	260, 387, 438
PpsI	GAGTC	3 cut(s)	260, 387, 438
PspFI	CCCAGC	1 cut(s)	93
PstNI	CAGNNNCTG	2 cut(s)	410, 422
RseI	CAYNNNNRTG	2 cut(s)	328, 425
Sau3AI	GATC	4 cut(s)	34, 57, 412, 463
SchI	GAGTC	3 cut(s)	260, 388, 439
SetI	ASST	8 cut(s)	129, 184, 220, 225, 265, 298, 328, 487
SfaNI	GCATC	2 cut(s)	416, 467
SfuI	TTCGAA	1 cut(s)	477
SmiMI	CAYNNNNRTG	2 cut(s)	328, 425
SmlI	CTYRAG	2 cut(s)	177, 297
SmoI	CTYRAG	2 cut(s)	177, 297
TaqI	TCGA	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	11, 197, 272
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	263, 494
Tsp45I	GTSAC	2 cut(s)	263, 494
TspDTI	ATGAA	2 cut(s)	24, 204
TspRI	CASTG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.