Rmu_sc0004556.1_g000001

N-terminal C2 in EEIG1 and EHBP1 proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004556.1
OG0008328
Physical Location & Seq
Forward (+)
6847 .. 8932
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1227 bp
atggtggtgaagatgatgaagtggcggccgtggccgccgctgaatacgaggaagtacgaggtgaggctggtggtgcggcggctggaggggtgggatccggtgcgggaggaggaggaggaggattccggcgagagtaagctggccgttgaggttaggtggaaggggaccagtagggggaaagtggggcccctgagctcgctacggcgggcggtggtgaagaggaactttacgaaggaggtggaggcgggtcaagacggcgtcgttcagtgggacgaggagtttcacagcgcttgcgcttttaattcgtacaaggacaatgtgtttcatccctgggagatcgccttcactgtgtttgatggtctgaatcaagggccaaaaattaaagctcctgttgtgggaacagcatcggtgaaccttgctgaatttgttgccgcagctgaagaaaatgagcttcagttgaacattcccctcaccacatctggcggtgctgctgagccctgtccctcactttgtatatcgcttggtttattggaattgagaacggcgcaagaaatgacagagccggtgcagggatcaattattcctgctccatcaccagcccaatcaagagaaactgtatctgcagaaaaggatgagctttctgctcttaaagccggtcttaggaaagttaagatttttaccgagtatgtgtccaccagaaaagcgaaaaaaccgtgccgtgaagaggacggcagtgaaggtaggtgctctgccagaagtgaggacggtgagtacaactatccatttgactctgattcacttgacgattgtgaagaaggtgaatcagatgatgtcaaagatgattccagtgtcaggaagtcattcagttatggcacactggcccatgcaaattatgctggaagaacaatatactccaatatgagaatcaatggcgaaggtgaggattgggtttattacagcaatcgcaaatcagatgtggggtgctcacaggccgaggactcatctgtatcagtctctgagccatctgctagttcaaagcggggcttactaccctggaggaagagaaagctgagcttcattcggtctcctaaagctaaaggagaaccattgttaaagaaggcttatggtgaagaaggtggtgatgacattgattttgatcgtcggcagcttagctctgatgaatgtctatctctcggggtaagatcctgtactgatagctctttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT-C2

Protein Analysis

408

Amino Acids

45.28

Weight (kDa)

5.18

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NT-C2 PF10358 22 - 146 2.1e-09 N-terminal C2 in EEIG1 and EHBP1 proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 89, 102, 580, 1197
AcoI YGGCCR 3 cut(s) 26, 32, 141
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 2 cut(s) 437, 459
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 4 cut(s) 56, 308, 773, 1210
AfeI AGCGCT 1 cut(s) 289
AfiI CCNNNNNNNGG 6 cut(s) 174, 395, 569, 660, 724, 852
AgsI TTSAA 2 cut(s) 460, 1035
AjnI CCWGG 2 cut(s) 329, 1052
Alw21I GWGCWC 3 cut(s) 197, 749, 986
Alw26I GTCTC 2 cut(s) 1018, 1089
AlwI GGATC 4 cut(s) 89, 102, 580, 1197
AlwNI CAGNNNCTG 1 cut(s) 1016
Ama87I CYCGRG 1 cut(s) 1193
Aor51HI AGCGCT 1 cut(s) 289
AoxI GGCC 7 cut(s) 26, 32, 141, 185, 371, 879, 990
ApaI GGGCCC 1 cut(s) 189
ApeKI GCWGC 3 cut(s) 434, 488, 1165
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 1136, 1168
Asp700I GAANNNNTTC 1 cut(s) 860
AspLEI GCGC 3 cut(s) 290, 296, 547
AspS9I GGNCC 5 cut(s) 165, 185, 186, 371, 880
AvaI CYCGRG 1 cut(s) 1193
AvaII GGWCC 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 189
BamHI GGATCC 1 cut(s) 94
BanII GRGCYC 3 cut(s) 189, 197, 498
Bbv12I GWGCWC 3 cut(s) 197, 749, 986
BbvI GCAGC 3 cut(s) 446, 475, 1177
BccI CCATC 3 cut(s) 350, 598, 1030
BceAI ACGGC 7 cut(s) 13, 128, 218, 271, 558, 702, 745
BciT130I CCWGG 2 cut(s) 331, 1054
BcoDI GTCTC 2 cut(s) 1018, 1089
BfaI CTAG 1 cut(s) 1029
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 9 cut(s) 26, 35, 38, 77, 80, 432, 435, 489, 1166
BlpI GCTNAGC 3 cut(s) 492, 1070, 1169
BlsI GCNGC 9 cut(s) 27, 36, 39, 78, 81, 433, 436, 490, 1167
Bme1390I CCNGG 2 cut(s) 331, 1054
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 1193
BmgT120I GGNCC 5 cut(s) 165, 185, 186, 371, 880
BmiI GGNNCC 5 cut(s) 96, 166, 186, 187, 188
BmrFI CCNGG 2 cut(s) 331, 1054
BmsI GCATC 1 cut(s) 413
BpmI CTGGAG 2 cut(s) 104, 1075
Bpu10I CCTNAGC 1 cut(s) 191
Bpu1102I GCTNAGC 3 cut(s) 492, 1070, 1169
BsaBI GATNNNNATC 1 cut(s) 1155
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 1089
BsaJI CCNNGG 5 cut(s) 29, 329, 330, 993, 1052
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 395, 569, 660, 724, 852
Bse118I RCCGGY 2 cut(s) 562, 653
Bse1I ACTGG 3 cut(s) 168, 846, 882
Bse8I GATNNNNATC 1 cut(s) 1155
BseBI CCWGG 2 cut(s) 331, 1054
BseDI CCNNGG 5 cut(s) 29, 329, 330, 993, 1052
BseGI GGATG 2 cut(s) 325, 637
BseJI GATNNNNATC 1 cut(s) 1155
BseLI CCNNNNNNNGG 6 cut(s) 174, 395, 569, 660, 724, 852
BseMII CTCAG 4 cut(s) 182, 483, 1008, 1061
BseNI ACTGG 3 cut(s) 168, 846, 882
BseRI GAGGAG 5 cut(s) 122, 125, 128, 131, 290
BseSI GKGCMC 1 cut(s) 189
BseX3I CGGCCG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 446, 475, 1177
BsgI GTGCAG 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 7 cut(s) 28, 34, 143, 187, 373, 881, 992
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 3 cut(s) 197, 749, 986
BsiHKCI CYCGRG 1 cut(s) 1193
BsiSI CCGG 4 cut(s) 98, 126, 563, 654
BslFI GGGAC 3 cut(s) 178, 284, 486
BslI CCNNNNNNNGG 6 cut(s) 174, 395, 569, 660, 724, 852
BsmAI GTCTC 2 cut(s) 1018, 1089
BsmFI GGGAC 3 cut(s) 178, 284, 486
BsnI GGCC 7 cut(s) 28, 34, 143, 187, 373, 881, 992
Bso31I GGTCTC 1 cut(s) 1089
BsoBI CYCGRG 1 cut(s) 1193
Bsp120I GGGCCC 1 cut(s) 185
Bsp1286I GDGCHC 5 cut(s) 189, 197, 498, 749, 986
Bsp143I GATC 5 cut(s) 94, 336, 572, 1156, 1202
Bsp1720I GCTNAGC 3 cut(s) 492, 1070, 1169
BspANI GGCC 7 cut(s) 28, 34, 143, 187, 373, 881, 992
BspCNI CTCAG 4 cut(s) 183, 484, 1009, 1062
BspLI GGNNCC 5 cut(s) 96, 166, 186, 187, 188
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 4 cut(s) 89, 102, 580, 1197
BspTNI GGTCTC 1 cut(s) 1089
BsrFI RCCGGY 2 cut(s) 562, 653
BsrI ACTGG 3 cut(s) 168, 846, 882
BssAI RCCGGY 2 cut(s) 562, 653
BssECI CCNNGG 5 cut(s) 29, 329, 330, 993, 1052
BssMI GATC 5 cut(s) 94, 336, 572, 1156, 1202
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 331, 1054
Bst4CI ACNGT 4 cut(s) 349, 616, 714, 767
Bst6I CTCTTC 3 cut(s) 212, 717, 1055
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 893
BstC8I GCNNGC 4 cut(s) 141, 197, 207, 292
BstDEI CTNAG 6 cut(s) 191, 492, 659, 1017, 1070, 1169
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 2 cut(s) 325, 637
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 3 cut(s) 290, 296, 547
BstKTI GATC 5 cut(s) 97, 339, 575, 1159, 1205
BstMAI GTCTC 2 cut(s) 1018, 1089
BstMBI GATC 5 cut(s) 94, 336, 572, 1156, 1202
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 5 cut(s) 31, 34, 73, 650, 893
BstNI CCWGG 2 cut(s) 331, 1054
BstSCI CCNGG 2 cut(s) 329, 1052
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 446, 475, 1177
BstX2I RGATCY 2 cut(s) 94, 1202
BstYI RGATCY 2 cut(s) 94, 1202
BstZI CGGCCG 1 cut(s) 26
BsuRI GGCC 7 cut(s) 28, 34, 143, 187, 373, 881, 992
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 325, 637
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 5 cut(s) 272, 345, 739, 853, 875
Cac8I GCNNGC 4 cut(s) 141, 197, 207, 292
CaiI CAGNNNCTG 1 cut(s) 1016
CfoI GCGC 3 cut(s) 290, 296, 547
Cfr10I RCCGGY 2 cut(s) 562, 653
Cfr13I GGNCC 5 cut(s) 165, 185, 186, 371, 880
CseI GACGC 1 cut(s) 247
Csp6I GTAC 4 cut(s) 55, 307, 772, 1209
CviAII CATG 1 cut(s) 884
CviQI GTAC 4 cut(s) 55, 307, 772, 1209
DdeI CTNAG 6 cut(s) 191, 492, 659, 1017, 1070, 1169
DpnI GATC 5 cut(s) 96, 338, 574, 1158, 1204
DpnII GATC 5 cut(s) 94, 336, 572, 1156, 1202
EaeI YGGCCR 3 cut(s) 26, 32, 141
EagI CGGCCG 1 cut(s) 26
Eam1104I CTCTTC 3 cut(s) 212, 717, 1055
EarI CTCTTC 3 cut(s) 212, 717, 1055
Ecl136II GAGCTC 1 cut(s) 195
EclXI CGGCCG 1 cut(s) 26
Eco24I GRGCYC 3 cut(s) 189, 197, 498
Eco31I GGTCTC 1 cut(s) 1089
Eco47I GGWCC 1 cut(s) 165
Eco47III AGCGCT 1 cut(s) 289
Eco52I CGGCCG 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 437, 459
Eco88I CYCGRG 1 cut(s) 1193
EcoICRI GAGCTC 1 cut(s) 195
EcoO109I RGGNCCY 2 cut(s) 185, 186
EcoRII CCWGG 2 cut(s) 329, 1052
EcoT38I GRGCYC 3 cut(s) 189, 197, 498
FaeI CATG 1 cut(s) 887
FaiI YATR 9 cut(s) 515, 687, 870, 885, 894, 910, 920, 1125, 1225
FalI AAGNNNNNCTT 8 cut(s) 209, 241, 642, 674, 1028, 1060, 1058, 1090
FaqI GGGAC 3 cut(s) 178, 284, 486
FatI CATG 1 cut(s) 883
FauI CCCGC 4 cut(s) 96, 198, 238, 1032
Fnu4HI GCNGC 9 cut(s) 26, 35, 38, 77, 80, 432, 435, 489, 1166
FokI GGATG 2 cut(s) 312, 644
FriOI GRGCYC 3 cut(s) 189, 197, 498
Fsp4HI GCNGC 9 cut(s) 26, 35, 38, 77, 80, 432, 435, 489, 1166
FspBI CTAG 1 cut(s) 1029
GlaI GCGC 3 cut(s) 289, 295, 546
GluI GCNGC 9 cut(s) 26, 35, 38, 77, 80, 432, 435, 489, 1166
GsuI CTGGAG 2 cut(s) 104, 1075
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 7 cut(s) 28, 34, 143, 187, 373, 881, 992
HapII CCGG 4 cut(s) 98, 126, 563, 654
HgaI GACGC 1 cut(s) 247
HhaI GCGC 3 cut(s) 290, 296, 547
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 1 cut(s) 887
Hin6I GCGC 3 cut(s) 288, 294, 545
HinP1I GCGC 3 cut(s) 288, 294, 545
HinfI GANTC 8 cut(s) 122, 364, 788, 794, 821, 842, 924, 998
HpaII CCGG 4 cut(s) 98, 126, 563, 654
Hpy166II GTNNAC 2 cut(s) 412, 693
Hpy188I TCNGA 6 cut(s) 363, 793, 826, 973, 1018, 1177
Hpy188III TCNNGA 3 cut(s) 251, 606, 853
Hpy8I GTNNAC 2 cut(s) 412, 693
Hpy99I CGWCG 2 cut(s) 263, 1164
HpyAV CCTTC 8 cut(s) 154, 226, 352, 731, 809, 929, 1111, 1127
HpyCH4III ACNGT 4 cut(s) 349, 616, 714, 767
HpyCH4V TGCA 3 cut(s) 568, 623, 887
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 34, 73, 650, 893
HpyF3I CTNAG 6 cut(s) 191, 492, 659, 1017, 1070, 1169
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 887
HspAI GCGC 3 cut(s) 288, 294, 545
Kzo9I GATC 5 cut(s) 94, 336, 572, 1156, 1202
LmnI GCTCC 2 cut(s) 391, 592
Lsp1109I GCAGC 3 cut(s) 446, 475, 1177
LweI GCATC 1 cut(s) 413
MaeI CTAG 1 cut(s) 1029
MalI GATC 5 cut(s) 96, 338, 574, 1158, 1204
MboI GATC 5 cut(s) 94, 336, 572, 1156, 1202
MboII GAAGA 8 cut(s) 22, 229, 452, 734, 824, 912, 1072, 1142
MflI RGATCY 2 cut(s) 94, 1202
MhlI GDGCHC 5 cut(s) 189, 197, 498, 749, 986
MluCI AATT 6 cut(s) 301, 378, 422, 533, 576, 889
MlyI GAGTC 2 cut(s) 782, 992
MroXI GAANNNNTTC 1 cut(s) 860
MseI TTAA 5 cut(s) 300, 381, 648, 669, 1112
MspA1I CMGCKG 2 cut(s) 40, 437
MspI CCGG 4 cut(s) 98, 126, 563, 654
MspR9I CCNGG 2 cut(s) 331, 1054
MvaI CCWGG 2 cut(s) 331, 1054
MwoI GCNNNNNNNGC 5 cut(s) 31, 34, 73, 650, 893
NdeII GATC 5 cut(s) 94, 336, 572, 1156, 1202
NlaIII CATG 1 cut(s) 887
NlaIV GGNNCC 5 cut(s) 96, 166, 186, 187, 188
NmeAIII GCCGAG 1 cut(s) 1018
PasI CCCWGGG 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 860
PfeI GAWTC 6 cut(s) 122, 364, 794, 821, 842, 924
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 9 cut(s) 27, 36, 39, 78, 81, 433, 436, 490, 1167
PleI GAGTC 2 cut(s) 782, 992
PpsI GAGTC 2 cut(s) 782, 992
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 329, 1052
PspGI CCWGG 2 cut(s) 329, 1052
PspN4I GGNNCC 5 cut(s) 96, 166, 186, 187, 188
PspOMI GGGCCC 1 cut(s) 185
PspPI GGNCC 5 cut(s) 165, 185, 186, 371, 880
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 2 cut(s) 94, 1202
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 4 cut(s) 56, 308, 773, 1210
RsaNI GTAC 4 cut(s) 55, 307, 772, 1209
SacI GAGCTC 1 cut(s) 197
SaqAI TTAA 5 cut(s) 300, 381, 648, 669, 1112
SatI GCNGC 9 cut(s) 26, 35, 38, 77, 80, 432, 435, 489, 1166
Sau3AI GATC 5 cut(s) 94, 336, 572, 1156, 1202
Sau96I GGNCC 5 cut(s) 165, 185, 186, 371, 880
SchI GAGTC 2 cut(s) 782, 992
ScrFI CCNGG 2 cut(s) 331, 1054
SduI GDGCHC 5 cut(s) 189, 197, 498, 749, 986
SfaNI GCATC 1 cut(s) 413
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 1 cut(s) 165
Sse9I AATT 6 cut(s) 301, 378, 422, 533, 576, 889
SspMI CTAG 1 cut(s) 1029
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 329, 1052
TaaI ACNGT 4 cut(s) 349, 616, 714, 767
TaqII GACCGA 1 cut(s) 1071
TasI AATT 6 cut(s) 301, 378, 422, 533, 576, 889
TatI WGTACW 2 cut(s) 771, 1208
TauI GCSGC 6 cut(s) 28, 37, 40, 79, 82, 434
TfiI GAWTC 6 cut(s) 122, 364, 794, 821, 842, 924
Tru1I TTAA 5 cut(s) 300, 381, 648, 669, 1112
Tru9I TTAA 5 cut(s) 300, 381, 648, 669, 1112
TscAI CASTG 5 cut(s) 272, 352, 739, 853, 882
TseI GCWGC 3 cut(s) 434, 488, 1165
TspDTI ATGAA 4 cut(s) 32, 314, 1066, 1194
TspRI CASTG 5 cut(s) 272, 352, 739, 853, 882
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 860
XspI CTAG 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.