Rmu_sc0004591.1_g000015

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004591.1
OG0014920
Physical Location & Seq
Forward (+)
64310 .. 65389
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atggaagctcgtagtttcattgttctttcagtctttctcctacctttgctctttggaacagtttctgctcagcttaggacggacttctataaaggcacatgtcccaatgttgagtccttagtcagctcagccgtcgcgaccaagttccagcagacttttgttactgttccagccactcttcgactcttcttccacgattgctttgttcggggttgtgatgcttcagtgttgattcagtcaccaactaataatgctgagaaggatcacccggacaacctttccctcgccggagatggatttgacaccgtgatcaaagccaaggctgcagttgataaagatcctaactgcagaaacaaagtttcatgtgcagatatactagctctggcaactagagatgttgtgaaattggccgggggaccatcgtattccgttgaattgggtaggcgagatggaagagtatcgactgttgcaagtgttcagaggcagcttcctcccccttctttcaatctagaccagcttaacaccatctttaacgctcatggtctcacccagactgacatgattgcattatcaggtagtcttctttttctgtcagcttttgattcatattgtgacataaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

207

Amino Acids

22.42

Weight (kDa)

6.27

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 192 4.2e-48 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18980 AT4G30170
fragaria_vesca FvH4_4g07750
malus_domestica MD13G1246700.v1.1
prunus_persica Prupe.1G081600_v2.0.a1
pyrus_communis pycom13g21780
rosa_chinensis RchiOBHm_Chr4g0400821
rosa_laevigata RLG00000009178
rosa_multiflora Rmu_sc0004591.1_g000015
rosa_roxburghii Rroxscaffold_5G00345640
rosa_rugosa Rorug04G0026100
rosa_samantha Rh4AG104000 Rh4BG099000 Rh4CG112200 Rh4DG095800
rosa_wichuraiana Rw4G008410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AclWI GGATC 2 cut(s) 270, 332
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 434, 505
AluBI AGCT 7 cut(s) 8, 73, 126, 380, 487, 517, 596
AluI AGCT 7 cut(s) 8, 73, 126, 380, 487, 517, 596
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 2 cut(s) 270, 332
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 323, 484
Asp700I GAANNNNTTC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 2 cut(s) 269, 412
AsuHPI GGTGA 3 cut(s) 231, 257, 538
AvaII GGWCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 572
BbvI GCAGC 2 cut(s) 310, 496
BccI CCATC 4 cut(s) 287, 427, 443, 533
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 269, 412
BcoDI GTCTC 1 cut(s) 548
BfaI CTAG 3 cut(s) 377, 390, 509
BfmI CTRYAG 2 cut(s) 324, 346
BisI GCNGC 2 cut(s) 324, 485
BlpI GCTNAGC 2 cut(s) 69, 127
BlsI GCNGC 2 cut(s) 325, 486
Bme1390I CCNGG 2 cut(s) 269, 412
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 2 cut(s) 269, 412
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 572
Bpu10I CCTNAGC 1 cut(s) 74
Bpu1102I GCTNAGC 2 cut(s) 69, 127
BpuMI CCSGG 2 cut(s) 269, 412
BsaBI GATNNNNATC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 318, 411
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 318, 411
BseJI GATNNNNATC 1 cut(s) 336
BseMII CTCAG 3 cut(s) 83, 141, 246
BseXI GCAGC 2 cut(s) 310, 496
BsgI GTGCAG 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 410
BsiSI CCGG 3 cut(s) 269, 288, 411
BslFI GGGAC 2 cut(s) 87, 429
BsmAI GTCTC 1 cut(s) 548
BsmFI GGGAC 2 cut(s) 87, 429
BsnI GGCC 1 cut(s) 410
Bso31I GGTCTC 1 cut(s) 548
Bsp143I GATC 3 cut(s) 262, 309, 337
Bsp1720I GCTNAGC 2 cut(s) 69, 127
Bsp68I TCGCGA 1 cut(s) 137
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 3 cut(s) 82, 140, 247
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 417
BspMAI CTGCAG 2 cut(s) 328, 350
BspPI GGATC 2 cut(s) 270, 332
BspTNI GGTCTC 1 cut(s) 548
BssECI CCNNGG 2 cut(s) 318, 411
BssMI GATC 3 cut(s) 262, 309, 337
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 4 cut(s) 61, 166, 307, 466
Bst6I CTCTTC 3 cut(s) 183, 191, 448
BstDEI CTNAG 5 cut(s) 69, 74, 118, 127, 255
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 3 cut(s) 265, 312, 340
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 3 cut(s) 262, 309, 337
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 2 cut(s) 267, 410
BstSFI CTRYAG 2 cut(s) 324, 346
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 310, 496
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 231
BtuMI TCGCGA 1 cut(s) 137
CaiI CAGNNNCTG 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 416
CviAII CATG 4 cut(s) 99, 363, 539, 559
DdeI CTNAG 5 cut(s) 69, 74, 118, 127, 255
DpnI GATC 3 cut(s) 264, 311, 339
DpnII GATC 3 cut(s) 262, 309, 337
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 3 cut(s) 183, 191, 448
EarI CTCTTC 3 cut(s) 183, 191, 448
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 4 cut(s) 102, 366, 542, 562
FaiI YATR 8 cut(s) 90, 100, 364, 374, 540, 560, 607, 617
FaqI GGGAC 2 cut(s) 87, 429
FatI CATG 4 cut(s) 98, 362, 538, 558
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 324, 485
Fsp4HI GCNGC 2 cut(s) 324, 485
FspBI CTAG 3 cut(s) 377, 390, 509
GluI GCNGC 2 cut(s) 324, 485
HaeIII GGCC 1 cut(s) 410
HapII CCGG 3 cut(s) 269, 288, 411
Hin1II CATG 4 cut(s) 102, 366, 542, 562
HinfI GANTC 4 cut(s) 113, 183, 232, 602
HpaII CCGG 3 cut(s) 269, 288, 411
HphI GGTGA 3 cut(s) 231, 257, 538
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 2 cut(s) 136, 509
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 253, 507
HpyCH4III ACNGT 4 cut(s) 61, 166, 307, 466
HpyCH4V TGCA 5 cut(s) 326, 348, 368, 470, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 5 cut(s) 69, 74, 118, 127, 255
Hsp92II CATG 4 cut(s) 102, 366, 542, 562
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 262, 309, 337
LpnPI CCDG 9 cut(s) 161, 183, 282, 301, 368, 424, 527, 558, 563
Lsp1109I GCAGC 2 cut(s) 310, 496
LweI GCATC 1 cut(s) 208
MaeI CTAG 3 cut(s) 377, 390, 509
MaeIII GTNAC 3 cut(s) 160, 237, 611
MalI GATC 3 cut(s) 264, 311, 339
MboI GATC 3 cut(s) 262, 309, 337
MboII GAAGA 5 cut(s) 170, 178, 181, 465, 572
MflI RGATCY 1 cut(s) 337
MluCI AATT 2 cut(s) 404, 434
MlyI GAGTC 2 cut(s) 122, 177
MnlI CCTC 3 cut(s) 293, 474, 501
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 2 cut(s) 519, 531
MspI CCGG 3 cut(s) 269, 288, 411
MspR9I CCNGG 2 cut(s) 269, 412
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 2 cut(s) 269, 412
NdeII GATC 3 cut(s) 262, 309, 337
NlaIII CATG 4 cut(s) 102, 366, 542, 562
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 237, 611
NruI TCGCGA 1 cut(s) 137
NspI RCATGY 1 cut(s) 102
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 232, 602
PkrI GCNGC 2 cut(s) 325, 486
PleI GAGTC 2 cut(s) 121, 177
PpsI GAGTC 2 cut(s) 121, 177
PscI ACATGT 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 416
PstI CTGCAG 2 cut(s) 328, 350
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 337
RruI TCGCGA 1 cut(s) 137
SaqAI TTAA 2 cut(s) 519, 531
SatI GCNGC 2 cut(s) 324, 485
Sau3AI GATC 3 cut(s) 262, 309, 337
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 2 cut(s) 122, 177
ScrFI CCNGG 2 cut(s) 269, 412
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 2 cut(s) 324, 346
SinI GGWCC 1 cut(s) 416
Sse9I AATT 2 cut(s) 404, 434
SspMI CTAG 3 cut(s) 377, 390, 509
StyD4I CCNGG 2 cut(s) 267, 410
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 4 cut(s) 61, 166, 307, 466
TaqI TCGA 2 cut(s) 181, 461
TasI AATT 2 cut(s) 404, 434
TfiI GAWTC 2 cut(s) 232, 602
Tru1I TTAA 2 cut(s) 519, 531
Tru9I TTAA 2 cut(s) 519, 531
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 2 cut(s) 237, 611
TseI GCWGC 2 cut(s) 323, 484
Tsp45I GTSAC 2 cut(s) 237, 611
TspDTI ATGAA 3 cut(s) 7, 351, 594
TspGWI ACGGA 2 cut(s) 95, 418
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 416
XbaI TCTAGA 1 cut(s) 508
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 3 cut(s) 377, 390, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.