Rmu_sc0004716.1_g000002

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004716.1
OG0019514
Physical Location & Seq
Reverse (-)
3263 .. 5489
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
atggctgagttcgatggcttgaaagatctggcgcaagtgtcgctctcttcttttccagtatgggtggagattatgggtctaccaccaaccctagttactgagggcgctgtggcacttattggagctaccttaggagagatcgtgcatctggataaggctggcattcggaaggatacaacggcaagggttcgtatccgtcaccctctgtcgtctccggtgaagcaagtcttccctccatccacctttgatttcatctctggggcatatgcgacggttttctcgacgtcggccatagaggcccaactggccaaaattccgtctccgattccaggggttagtgcgcccatgcaagcaactgaagttgttccatctctcagtgggaagaagcggccggctcctgcggccatcatgcactatactaaacgtaagaagataggtgcgaagaaagttaagttgggtcgtcctcctgggcgcaagaataatccgaaacccgtgggtttgaaacctaagaagctgatttctgaggatccgaaaccttggaggaggaggagttttaatgcggaggagaattctttcgctggtgaaggcagctcgggtctgattgcagtaacatcacccctaactggtggggtggttcacatgtcttctagcaaaggttctgagtctgagccgaaaagagcagcagcggcaaagaaaccaaaaacaccgaaacaactgcaagtgacctccaaggaaaaattgaagaagcttcagaatgaaggaaaagtctcaaaacttgcgtccaccagaagaaggtcaaagcctacaactgcacagtctgtgcaaggtcctacacccccacctattcaagcttgtggttcacaaccaacacaggctagcaagacatcagaatttgctgctttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

301

Amino Acids

32.01

Weight (kDa)

10.38

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019514)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004716.1_g000002
rosa_roxburghii Rroxscaffold_2G00107110
rosa_samantha Rh4AG015000 Rh4BG008600 Rh5BG458100 Rh5BG483100 Rh5CG479900
rosa_wichuraiana Rw3G027880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 79
AciI CCGC 4 cut(s) 388, 401, 560, 686
AclWI GGATC 2 cut(s) 521, 534
AcoI YGGCCR 4 cut(s) 288, 306, 389, 402
AcsI RAATTY 3 cut(s) 312, 568, 890
AcuI CTGAAG 2 cut(s) 378, 734
AcyI GRCGYC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 329, 623, 792
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 4 cut(s) 22, 502, 742, 848
AjnI CCWGG 2 cut(s) 328, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 5 cut(s) 125, 514, 591, 748, 851
AluI AGCT 5 cut(s) 125, 514, 591, 748, 851
Alw26I GTCTC 3 cut(s) 216, 324, 772
AlwI GGATC 2 cut(s) 521, 534
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 5 cut(s) 288, 297, 306, 389, 402
ApeKI GCWGC 4 cut(s) 588, 680, 683, 896
ApoI RAATTY 3 cut(s) 312, 568, 890
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
Asp700I GAANNNNTTC 2 cut(s) 363, 572
AspLEI GCGC 4 cut(s) 34, 107, 343, 474
AspS9I GGNCC 2 cut(s) 298, 827
AsuHPI GGTGA 4 cut(s) 191, 229, 593, 606
AsuNHI GCTAGC 1 cut(s) 875
AvaI CYCGRG 1 cut(s) 592
AvaII GGWCC 1 cut(s) 827
AxyI CCTNAGG 1 cut(s) 130
BalI TGGCCA 1 cut(s) 308
BamHI GGATCC 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 220, 636
BbvI GCAGC 4 cut(s) 600, 692, 695, 883
BccI CCATC 4 cut(s) 8, 244, 376, 413
BceAI ACGGC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BciT130I CCWGG 2 cut(s) 330, 468
BciVI GTATCC 2 cut(s) 166, 203
BcoDI GTCTC 3 cut(s) 216, 324, 772
BfaI CTAG 3 cut(s) 92, 648, 876
BfoI RGCGCY 1 cut(s) 108
BfuI GTATCC 2 cut(s) 166, 203
BglI GCCNNNNNGGC 2 cut(s) 296, 305
BglII AGATCT 1 cut(s) 25
BisI GCNGC 7 cut(s) 389, 402, 589, 681, 684, 687, 897
BlsI GCNGC 7 cut(s) 390, 403, 590, 682, 685, 688, 898
Bme1390I CCNGG 2 cut(s) 330, 468
Bme18I GGWCC 1 cut(s) 827
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 298, 827
BmiI GGNNCC 2 cut(s) 396, 528
BmrFI CCNGG 2 cut(s) 330, 468
BmsI GCATC 1 cut(s) 154
BmtI GCTAGC 1 cut(s) 879
BpiI GAAGAC 2 cut(s) 220, 636
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 5 cut(s) 329, 467, 492, 536, 729
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 4 cut(s) 126, 156, 535, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 623, 792
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 3 cut(s) 56, 309, 628
Bse21I CCTNAGG 1 cut(s) 130
BseBI CCWGG 2 cut(s) 330, 468
BseDI CCNNGG 5 cut(s) 329, 467, 492, 536, 729
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 3 cut(s) 329, 623, 792
BseMII CTCAG 5 cut(s) 90, 388, 513, 651, 657
BseNI ACTGG 3 cut(s) 56, 309, 628
BseRI GAGGAG 4 cut(s) 556, 559, 562, 578
BseX3I CGGCCG 1 cut(s) 389
BseXI GCAGC 4 cut(s) 600, 692, 695, 883
BsgI GTGCAG 1 cut(s) 795
Bsh1285I CGRYCG 1 cut(s) 392
BshFI GGCC 5 cut(s) 290, 299, 308, 391, 404
BsiEI CGRYCG 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 2 cut(s) 215, 392
BslI CCNNNNNNNGG 3 cut(s) 329, 623, 792
BsmAI GTCTC 3 cut(s) 216, 324, 772
BsmBI CGTCTC 2 cut(s) 216, 324
BsmI GAATGC 1 cut(s) 162
BsnI GGCC 5 cut(s) 290, 299, 308, 391, 404
BsoBI CYCGRG 1 cut(s) 592
Bsp143I GATC 3 cut(s) 25, 138, 526
BspACI CCGC 4 cut(s) 388, 401, 560, 686
BspANI GGCC 5 cut(s) 290, 299, 308, 391, 404
BspCNI CTCAG 5 cut(s) 91, 387, 514, 652, 658
BspLI GGNNCC 2 cut(s) 396, 528
BspOI GCTAGC 1 cut(s) 879
BspPI GGATC 2 cut(s) 521, 534
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 3 cut(s) 56, 309, 628
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 5 cut(s) 329, 467, 492, 536, 729
BssMI GATC 3 cut(s) 25, 138, 526
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 536, 729
Bst2UI CCWGG 2 cut(s) 330, 468
Bst4CI ACNGT 2 cut(s) 274, 816
Bst6I CTCTTC 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 284
BstC8I GCNNGC 4 cut(s) 160, 351, 393, 877
BstDEI CTNAG 8 cut(s) 6, 99, 130, 374, 507, 522, 660, 666
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 4 cut(s) 34, 107, 343, 474
BstKTI GATC 3 cut(s) 28, 141, 529
BstMAI GTCTC 3 cut(s) 216, 324, 772
BstMBI GATC 3 cut(s) 25, 138, 526
BstMCI CGRYCG 1 cut(s) 392
BstMWI GCNNNNNNNGC 5 cut(s) 40, 296, 305, 401, 686
BstNI CCWGG 2 cut(s) 330, 468
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 2 cut(s) 328, 466
BstV1I GCAGC 4 cut(s) 600, 692, 695, 883
BstV2I GAAGAC 2 cut(s) 220, 636
BstX2I RGATCY 2 cut(s) 25, 526
BstYI RGATCY 2 cut(s) 25, 526
BstZI CGGCCG 1 cut(s) 389
Bsu36I CCTNAGG 1 cut(s) 130
BsuI GTATCC 2 cut(s) 166, 203
BsuRI GGCC 5 cut(s) 290, 299, 308, 391, 404
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 4 cut(s) 160, 351, 393, 877
CfoI GCGC 4 cut(s) 34, 107, 343, 474
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 298, 827
CseI GACGC 1 cut(s) 768
CviAII CATG 3 cut(s) 346, 409, 640
DdeI CTNAG 8 cut(s) 6, 99, 130, 374, 507, 522, 660, 666
DpnI GATC 3 cut(s) 27, 140, 528
DpnII GATC 3 cut(s) 25, 138, 526
EaeI YGGCCR 4 cut(s) 288, 306, 389, 402
EagI CGGCCG 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 536, 729
Eco47I GGWCC 1 cut(s) 827
Eco52I CGGCCG 1 cut(s) 389
Eco57I CTGAAG 2 cut(s) 378, 734
Eco81I CCTNAGG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 827
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 2 cut(s) 328, 466
EcoT14I CCWWGG 2 cut(s) 536, 729
ErhI CCWWGG 2 cut(s) 536, 729
Esp3I CGTCTC 2 cut(s) 216, 324
FaeI CATG 3 cut(s) 349, 412, 643
FaiI YATR 9 cut(s) 61, 74, 265, 267, 293, 347, 410, 417, 641
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 3 cut(s) 345, 408, 639
FauNDI CATATG 1 cut(s) 265
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 7 cut(s) 389, 402, 589, 681, 684, 687, 897
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 7 cut(s) 389, 402, 589, 681, 684, 687, 897
FspBI CTAG 3 cut(s) 92, 648, 876
GlaI GCGC 4 cut(s) 33, 106, 342, 473
GluI GCNGC 7 cut(s) 389, 402, 589, 681, 684, 687, 897
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 5 cut(s) 290, 299, 308, 391, 404
HapII CCGG 2 cut(s) 215, 392
HgaI GACGC 1 cut(s) 768
HhaI GCGC 4 cut(s) 34, 107, 343, 474
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 3 cut(s) 349, 412, 643
Hin6I GCGC 4 cut(s) 32, 105, 341, 472
HinP1I GCGC 4 cut(s) 32, 105, 341, 472
HindIII AAGCTT 2 cut(s) 746, 849
HinfI GANTC 2 cut(s) 325, 662
HpaII CCGG 2 cut(s) 215, 392
HphI GGTGA 4 cut(s) 191, 229, 593, 606
Hpy166II GTNNAC 4 cut(s) 80, 637, 783, 860
Hpy188III TCNNGA 2 cut(s) 149, 280
Hpy8I GTNNAC 4 cut(s) 80, 637, 783, 860
Hpy99I CGWCG 3 cut(s) 274, 286, 289
HpyAV CCTTC 4 cut(s) 163, 578, 752, 786
HpyCH4III ACNGT 2 cut(s) 274, 816
HpyCH4IV ACGT 2 cut(s) 284, 424
HpyCH4V TGCA 7 cut(s) 145, 349, 412, 605, 718, 812, 823
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 296, 305, 401, 686
HpyF3I CTNAG 8 cut(s) 6, 99, 130, 374, 507, 522, 660, 666
HpySE526I ACGT 2 cut(s) 284, 424
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 3 cut(s) 349, 412, 643
HspAI GCGC 4 cut(s) 32, 105, 341, 472
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 3 cut(s) 25, 138, 526
LmnI GCTCC 2 cut(s) 122, 400
Lsp1109I GCAGC 4 cut(s) 600, 692, 695, 883
LweI GCATC 1 cut(s) 154
MaeI CTAG 3 cut(s) 92, 648, 876
MaeII ACGT 2 cut(s) 284, 424
MaeIII GTNAC 4 cut(s) 94, 197, 607, 721
MalI GATC 3 cut(s) 27, 140, 528
MboI GATC 3 cut(s) 25, 138, 526
MboII GAAGA 8 cut(s) 39, 220, 394, 442, 454, 636, 754, 801
MflI RGATCY 2 cut(s) 25, 526
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 4 cut(s) 312, 568, 737, 890
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 671
Mox20I TGGCCA 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 391
MroXI GAANNNNTTC 2 cut(s) 363, 572
MscI TGGCCA 1 cut(s) 308
MseI TTAA 3 cut(s) 450, 555, 904
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 2 cut(s) 215, 392
MspR9I CCNGG 2 cut(s) 330, 468
Mva1269I GAATGC 1 cut(s) 162
MvaI CCWGG 2 cut(s) 330, 468
MwoI GCNNNNNNNGC 5 cut(s) 40, 296, 305, 401, 686
NaeI GCCGGC 1 cut(s) 393
NdeI CATATG 1 cut(s) 265
NdeII GATC 3 cut(s) 25, 138, 526
NgoMIV GCCGGC 1 cut(s) 391
NheI GCTAGC 1 cut(s) 875
NlaIII CATG 3 cut(s) 349, 412, 643
NlaIV GGNNCC 2 cut(s) 396, 528
NmuCI GTSAC 2 cut(s) 197, 721
NspI RCATGY 1 cut(s) 643
PciI ACATGT 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 393
PdmI GAANNNNTTC 2 cut(s) 363, 572
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 7 cut(s) 390, 403, 590, 682, 685, 688, 898
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PpuMI RGGWCCY 1 cut(s) 827
PscI ACATGT 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 827
Psp6I CCWGG 2 cut(s) 328, 466
PspGI CCWGG 2 cut(s) 328, 466
PspN4I GGNNCC 2 cut(s) 396, 528
PspPI GGNCC 2 cut(s) 298, 827
PspPPI RGGWCCY 1 cut(s) 827
PsuI RGATCY 2 cut(s) 25, 526
SaqAI TTAA 3 cut(s) 450, 555, 904
SatI GCNGC 7 cut(s) 389, 402, 589, 681, 684, 687, 897
Sau3AI GATC 3 cut(s) 25, 138, 526
Sau96I GGNCC 2 cut(s) 298, 827
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 2 cut(s) 330, 468
SfaNI GCATC 1 cut(s) 154
SfiI GGCCNNNNNGGCC 2 cut(s) 296, 305
SinI GGWCC 1 cut(s) 827
Sse9I AATT 4 cut(s) 312, 568, 737, 890
SsiI CCGC 4 cut(s) 388, 401, 560, 686
SspMI CTAG 3 cut(s) 92, 648, 876
StyD4I CCNGG 2 cut(s) 328, 466
StyI CCWWGG 2 cut(s) 536, 729
TaaI ACNGT 2 cut(s) 274, 816
TaiI ACGT 2 cut(s) 287, 427
TaqI TCGA 2 cut(s) 12, 281
TasI AATT 4 cut(s) 312, 568, 737, 890
TauI GCSGC 3 cut(s) 391, 404, 689
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 3 cut(s) 450, 555, 904
Tru9I TTAA 3 cut(s) 450, 555, 904
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 197, 721
TseI GCWGC 4 cut(s) 588, 680, 683, 896
Tsp45I GTSAC 2 cut(s) 197, 721
TspDTI ATGAA 2 cut(s) 241, 771
TspGWI ACGGA 2 cut(s) 185, 306
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 827
XapI RAATTY 3 cut(s) 312, 568, 890
XceI RCATGY 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 2 cut(s) 363, 572
XspI CTAG 3 cut(s) 92, 648, 876
ZraI GACGTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.