No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004716.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00107110 |
| rosa_samantha | Rh4AG015000 Rh4BG008600 Rh5BG458100 Rh5BG483100 Rh5CG479900 |
| rosa_wichuraiana | Rw3G027880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 77 |
| AclWI | GGATC | 1 cut(s) | 19 |
| AcsI | RAATTY | 1 cut(s) | 281 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 183 |
| AgsI | TTSAA | 2 cut(s) | 133, 239 |
| AluBI | AGCT | 2 cut(s) | 139, 242 |
| AluI | AGCT | 2 cut(s) | 139, 242 |
| AlwI | GGATC | 1 cut(s) | 19 |
| ApeKI | GCWGC | 2 cut(s) | 71, 74 |
| ApoI | RAATTY | 1 cut(s) | 281 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 155, 187 |
| AspS9I | GGNCC | 1 cut(s) | 218 |
| AsuNHI | GCTAGC | 1 cut(s) | 266 |
| AvaII | GGWCC | 1 cut(s) | 218 |
| BbvI | GCAGC | 2 cut(s) | 83, 86 |
| BccI | CCATC | 2 cut(s) | 43, 47 |
| BfaI | CTAG | 1 cut(s) | 267 |
| BisI | GCNGC | 3 cut(s) | 72, 75, 78 |
| BlsI | GCNGC | 3 cut(s) | 73, 76, 79 |
| Bme18I | GGWCC | 1 cut(s) | 218 |
| BmgT120I | GGNCC | 1 cut(s) | 218 |
| BmtI | GCTAGC | 1 cut(s) | 270 |
| BpuEI | CTTGAG | 1 cut(s) | 6 |
| BsaJI | CCNNGG | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 183 |
| BseDI | CCNNGG | 1 cut(s) | 120 |
| BseGI | GGATG | 2 cut(s) | 10, 58 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 183 |
| BseXI | GCAGC | 2 cut(s) | 83, 86 |
| BseYI | CCCAGC | 1 cut(s) | 32 |
| BsgI | GTGCAG | 1 cut(s) | 186 |
| BslFI | GGGAC | 2 cut(s) | 143, 283 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 183 |
| BsmFI | GGGAC | 2 cut(s) | 143, 283 |
| Bsp143I | GATC | 1 cut(s) | 11 |
| BspACI | CCGC | 1 cut(s) | 77 |
| BspOI | GCTAGC | 1 cut(s) | 270 |
| BspPI | GGATC | 1 cut(s) | 19 |
| BssECI | CCNNGG | 1 cut(s) | 120 |
| BssMI | GATC | 1 cut(s) | 11 |
| BssT1I | CCWWGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 1 cut(s) | 268 |
| BstF5I | GGATG | 2 cut(s) | 10, 58 |
| BstKTI | GATC | 1 cut(s) | 14 |
| BstMBI | GATC | 1 cut(s) | 11 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 77 |
| BstV1I | GCAGC | 2 cut(s) | 83, 86 |
| BstX2I | RGATCY | 1 cut(s) | 11 |
| BstYI | RGATCY | 1 cut(s) | 11 |
| BtsCI | GGATG | 2 cut(s) | 10, 58 |
| BtsIMutI | CAGTG | 1 cut(s) | 95 |
| Cac8I | GCNNGC | 1 cut(s) | 268 |
| Cfr13I | GGNCC | 1 cut(s) | 218 |
| CviJI | RGCY | 5 cut(s) | 32, 61, 139, 242, 266 |
| CviKI_1 | RGCY | 5 cut(s) | 32, 61, 139, 242, 266 |
| DpnI | GATC | 1 cut(s) | 13 |
| DpnII | GATC | 1 cut(s) | 11 |
| Eco130I | CCWWGG | 1 cut(s) | 120 |
| Eco47I | GGWCC | 1 cut(s) | 218 |
| EcoO109I | RGGNCCY | 1 cut(s) | 218 |
| EcoT14I | CCWWGG | 1 cut(s) | 120 |
| ErhI | CCWWGG | 1 cut(s) | 120 |
| FaiI | YATR | 6 cut(s) | 144, 303, 318, 320, 322, 324 |
| FaqI | GGGAC | 2 cut(s) | 143, 283 |
| Fnu4HI | GCNGC | 3 cut(s) | 72, 75, 78 |
| FokI | GGATG | 2 cut(s) | 17, 65 |
| Fsp4HI | GCNGC | 3 cut(s) | 72, 75, 78 |
| FspBI | CTAG | 1 cut(s) | 267 |
| GluI | GCNGC | 3 cut(s) | 72, 75, 78 |
| GsaI | CCCAGC | 1 cut(s) | 36 |
| HindIII | AAGCTT | 2 cut(s) | 137, 240 |
| HinfI | GANTC | 1 cut(s) | 309 |
| Hpy166II | GTNNAC | 2 cut(s) | 174, 251 |
| Hpy188I | TCNGA | 1 cut(s) | 280 |
| Hpy8I | GTNNAC | 2 cut(s) | 174, 251 |
| HpyAV | CCTTC | 2 cut(s) | 143, 177 |
| HpyCH4III | ACNGT | 1 cut(s) | 207 |
| HpyCH4V | TGCA | 4 cut(s) | 109, 203, 214, 326 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 77 |
| Kzo9I | GATC | 1 cut(s) | 11 |
| LpnPI | CCDG | 4 cut(s) | 18, 180, 190, 248 |
| Lsp1109I | GCAGC | 2 cut(s) | 83, 86 |
| MaeI | CTAG | 1 cut(s) | 267 |
| MaeIII | GTNAC | 1 cut(s) | 112 |
| MalI | GATC | 1 cut(s) | 13 |
| MboI | GATC | 1 cut(s) | 11 |
| MboII | GAAGA | 2 cut(s) | 145, 192 |
| MflI | RGATCY | 1 cut(s) | 11 |
| MluCI | AATT | 2 cut(s) | 128, 281 |
| MlyI | GAGTC | 1 cut(s) | 318 |
| MnlI | CCTC | 1 cut(s) | 127 |
| MseI | TTAA | 1 cut(s) | 294 |
| MslI | CAYNNNNRTG | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 77 |
| NdeII | GATC | 1 cut(s) | 11 |
| NheI | GCTAGC | 1 cut(s) | 266 |
| NmuCI | GTSAC | 1 cut(s) | 112 |
| PkrI | GCNGC | 3 cut(s) | 73, 76, 79 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| PpuMI | RGGWCCY | 1 cut(s) | 218 |
| Psp5II | RGGWCCY | 1 cut(s) | 218 |
| PspFI | CCCAGC | 1 cut(s) | 32 |
| PspPI | GGNCC | 1 cut(s) | 218 |
| PspPPI | RGGWCCY | 1 cut(s) | 218 |
| PsuI | RGATCY | 1 cut(s) | 11 |
| RseI | CAYNNNNRTG | 1 cut(s) | 321 |
| SaqAI | TTAA | 1 cut(s) | 294 |
| SatI | GCNGC | 3 cut(s) | 72, 75, 78 |
| Sau3AI | GATC | 1 cut(s) | 11 |
| Sau96I | GGNCC | 1 cut(s) | 218 |
| SchI | GAGTC | 1 cut(s) | 318 |
| SetI | ASST | 7 cut(s) | 119, 141, 188, 196, 220, 235, 244 |
| SinI | GGWCC | 1 cut(s) | 218 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 321 |
| SmlI | CTYRAG | 1 cut(s) | 21 |
| SmoI | CTYRAG | 1 cut(s) | 21 |
| Sse9I | AATT | 2 cut(s) | 128, 281 |
| SsiI | CCGC | 1 cut(s) | 77 |
| SspMI | CTAG | 1 cut(s) | 267 |
| StyI | CCWWGG | 1 cut(s) | 120 |
| TaaI | ACNGT | 1 cut(s) | 207 |
| TasI | AATT | 2 cut(s) | 128, 281 |
| TauI | GCSGC | 1 cut(s) | 80 |
| Tru1I | TTAA | 1 cut(s) | 294 |
| Tru9I | TTAA | 1 cut(s) | 294 |
| TscAI | CASTG | 1 cut(s) | 102 |
| TseFI | GTSAC | 1 cut(s) | 112 |
| TseI | GCWGC | 2 cut(s) | 71, 74 |
| Tsp45I | GTSAC | 1 cut(s) | 112 |
| TspDTI | ATGAA | 2 cut(s) | 131, 162 |
| TspRI | CASTG | 1 cut(s) | 102 |
| VpaK11BI | GGWCC | 1 cut(s) | 218 |
| XapI | RAATTY | 1 cut(s) | 281 |
| XspI | CTAG | 1 cut(s) | 267 |